Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 N 1.46501 * 109.47391 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00021 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00025 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47377 * 180.02562 * 9 7 6 11 11 C 1.76195 * 99.99990 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00068 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00285 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00077 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46774 * 89.99749 * 15 13 11 17 17 H 1.48490 * 109.47377 * 210.00110 * 15 13 11 18 18 H 1.48504 * 109.46931 * 330.00459 * 15 13 11 19 19 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 20 20 C 1.34780 * 119.99566 * 275.00168 * 19 2 1 21 21 O 1.21280 * 120.00423 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99795 * 180.02562 * 20 19 2 23 23 C 1.50703 * 109.47064 * 179.97438 * 22 20 19 24 24 C 1.34852 * 125.88922 * 274.68606 * 23 22 20 25 25 C 1.40892 * 107.41664 * 179.88544 * 24 23 22 26 26 C 1.34854 * 107.41763 * 0.38108 * 25 24 23 27 27 N 1.36339 * 125.89151 * 94.99879 * 23 22 20 28 28 H 0.97003 * 125.63769 * 359.95878 * 27 23 22 29 29 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 30 30 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 32 32 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 34 34 H 1.09002 * 109.47285 * 299.99610 * 5 4 2 35 35 H 1.09000 * 109.47465 * 59.99400 * 5 4 2 36 36 H 0.96998 * 119.99873 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47139 * 300.00676 * 9 7 6 38 38 H 1.09000 * 109.47156 * 59.99592 * 9 7 6 39 39 H 0.97009 * 120.00106 * 179.97438 * 14 13 11 40 40 H 0.96995 * 120.00423 * 94.99474 * 19 2 1 41 41 H 1.09002 * 109.47060 * 299.99722 * 22 20 19 42 42 H 1.09001 * 109.47380 * 59.99809 * 22 20 19 43 43 H 1.08003 * 126.29285 * 0.02790 * 24 23 22 44 44 H 1.07999 * 126.29338 * 180.13129 * 25 24 23 45 45 H 1.07994 * 125.89268 * 179.72770 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 7 4.0531 -1.3042 -2.5098 7 6 5.3740 -1.3396 -2.7754 8 8 6.1584 -0.7998 -2.0242 9 6 5.8763 -2.0499 -4.0059 10 16 7.6802 -1.9224 -4.0821 11 6 7.9872 -2.8122 -5.5716 12 1 7.1635 -3.2348 -6.1278 13 6 9.2877 -2.9701 -6.0302 14 7 9.5170 -3.6344 -7.1431 15 14 10.7124 -2.2386 -5.0687 16 1 11.2044 -3.2319 -4.0804 17 1 11.8105 -1.8846 -6.0034 18 1 10.2548 -1.0178 -4.3576 19 7 2.0184 -0.6907 1.1960 20 6 2.1471 -0.0184 2.3571 21 8 1.8590 1.1584 2.4116 22 6 2.6500 -0.7288 3.5873 23 6 2.7011 0.2396 4.7409 24 6 3.7200 1.0755 5.0268 25 6 3.3588 1.8021 6.1786 26 6 2.1367 1.3765 6.5577 27 7 1.7279 0.4174 5.6790 28 1 0.8839 -0.0594 5.7151 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.7516 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8532 0.4371 -1.3574 35 1 3.9994 -1.0727 -0.4261 36 1 3.4258 -1.7356 -3.1108 37 1 5.5882 -3.1003 -3.9622 38 1 5.4414 -1.5906 -4.8936 39 1 10.4259 -3.7444 -7.4638 40 1 2.2490 -1.6318 1.1524 41 1 1.9778 -1.5511 3.8324 42 1 3.6493 -1.1205 3.3977 43 1 4.6422 1.1721 4.4731 44 1 3.9534 2.5579 6.6702 45 1 1.5783 1.7333 7.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295826656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -41.448796 kcal Electronic energy + Delta-G solvation = -25534.274980 eV Core-core repulsion = 21678.320711 eV Total energy + Delta-G solvation = -3855.954269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42457 -40.03739 -39.25140 -36.89203 -34.53581 -32.77456 -32.45102 -31.41117 -31.14034 -30.15619 -28.25722 -26.83439 -25.63046 -23.68219 -21.96414 -21.02200 -20.79347 -20.45556 -20.29125 -18.00890 -17.80010 -17.47925 -16.63655 -16.29386 -16.06130 -15.57566 -15.38634 -14.96984 -14.54065 -14.32489 -14.05390 -13.88575 -13.81047 -13.72663 -13.61142 -13.36539 -13.13846 -12.80550 -12.65057 -12.46472 -12.42159 -12.30569 -11.92907 -11.73032 -11.63612 -11.34028 -11.26620 -11.01526 -10.61830 -10.18304 -9.86868 -9.58717 -9.44684 -9.04394 -9.03982 -8.98788 -8.51421 -8.26894 -6.93273 -6.30110 -4.02038 1.93218 2.32728 2.69726 2.74125 2.94732 2.96363 3.12328 3.27832 3.33021 3.50299 3.62414 4.29855 4.32322 4.38248 4.44241 4.62212 4.65734 4.68999 4.75116 4.94985 5.01463 5.04710 5.05987 5.09045 5.21905 5.30688 5.31884 5.32103 5.51403 5.53012 5.67066 5.75313 5.76688 5.84227 5.98690 6.02118 6.12196 6.13323 6.47302 6.76212 6.89885 7.11598 7.33707 7.56337 7.90815 7.92813 8.40052 8.46038 9.16125 10.79016 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.001857 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.597314 B =15073.050603 C =16514.262949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.728 5.728 20 C 0.513 3.487 21 O -0.524 6.524 22 C -0.073 4.073 23 C 0.028 3.972 24 C -0.177 4.177 25 C -0.200 4.200 26 C -0.013 4.013 27 N -0.554 5.554 28 H 0.410 0.590 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.401 0.599 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.843 4.160 22.503 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.392 6.392 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.382 5.382 20 C 0.299 3.701 21 O -0.399 6.399 22 C -0.113 4.113 23 C -0.084 4.084 24 C -0.202 4.202 25 C -0.224 4.224 26 C -0.144 4.144 27 N -0.149 5.149 28 H 0.246 0.754 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.730 5.801 23.671 32.652 hybrid contribution -0.783 -1.369 -1.047 1.893 sum -22.514 4.432 22.624 32.223 Atomic orbital electron populations 1.22156 0.94889 1.02169 1.02773 1.20873 0.94058 0.97816 0.83162 0.88913 1.22126 0.95383 1.01960 0.98310 1.21268 0.92677 0.98030 0.88327 1.45965 1.07723 1.58478 1.27153 1.20297 0.81650 0.79770 0.86767 1.90711 1.54986 1.44426 1.49114 1.23280 1.03095 1.03202 0.97918 1.84812 0.98221 1.73717 1.34785 1.22315 0.97275 1.39313 1.08072 0.89398 1.24712 0.98309 0.93864 0.94409 1.69937 1.21718 1.39367 1.20638 0.86737 0.82434 0.82048 0.80653 1.19195 1.19925 1.15904 1.46123 1.68183 1.14144 1.09708 1.20575 0.77660 0.87523 0.84364 1.90752 1.48727 1.15682 1.84760 1.20132 1.04718 0.96682 0.89803 1.19454 0.91218 1.03589 0.94147 1.20691 0.99797 0.99846 0.99888 1.20896 0.97081 1.04503 0.99958 1.21774 0.98268 0.96193 0.98199 1.41850 1.16955 1.33040 1.23060 0.75435 0.91388 0.92387 0.92059 0.90492 0.89397 0.91484 0.91546 0.76685 0.88522 0.88463 0.91933 0.76475 0.88445 0.86487 0.84845 0.84786 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.48 37.16 0.35 -0.63 16 2 C 0.15 1.01 2.57 -67.93 -0.17 0.83 16 3 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 4 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 5 C 0.12 1.19 5.56 -4.05 -0.02 1.17 16 6 N -0.74 -8.51 5.56 -60.30 -0.33 -8.84 16 7 C 0.53 9.07 7.85 -10.99 -0.09 8.99 16 8 O -0.52 -11.04 15.86 5.56 0.09 -10.96 16 9 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 10 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 11 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 12 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 15 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.24 -5.97 6.74 56.52 0.38 -5.58 16 19 N -0.73 -4.67 4.53 -53.80 -0.24 -4.92 16 20 C 0.51 4.53 7.79 -10.98 -0.09 4.44 16 21 O -0.52 -6.96 15.70 5.56 0.09 -6.88 16 22 C -0.07 -0.46 6.24 -29.03 -0.18 -0.65 16 23 C 0.03 0.26 5.66 -81.79 -0.46 -0.20 16 24 C -0.18 -1.91 10.76 -39.78 -0.43 -2.34 16 25 C -0.20 -1.96 10.86 -39.78 -0.43 -2.39 16 26 C -0.01 -0.11 11.94 -16.75 -0.20 -0.31 16 27 N -0.55 -4.18 6.07 -9.12 -0.06 -4.24 16 28 H 0.41 1.89 8.96 -40.82 -0.37 1.52 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 36 H 0.40 3.35 8.47 -40.82 -0.35 3.00 16 37 H 0.10 1.67 8.14 -51.91 -0.42 1.24 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.40 1.62 8.60 -40.82 -0.35 1.27 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -38.69 397.51 -8.75 -47.44 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.93 Total: 2.65 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.41 Total: -6.08 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.14 Total: -43.62 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.18 Total: -17.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.69 -8.75 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295826656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.993 kcal (2) G-P(sol) polarization free energy of solvation -38.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds