Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 N 1.46501 * 109.47391 * 179.97438 * 5 4 2 7 7 C 1.34780 * 120.00021 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00025 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47377 * 180.02562 * 9 7 6 11 11 C 1.76195 * 99.99990 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00068 * 180.02562 * 11 10 9 14 14 N 1.31625 * 120.00285 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 120.00077 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46774 * 89.99749 * 15 13 11 17 17 H 1.48490 * 109.47377 * 210.00110 * 15 13 11 18 18 H 1.48504 * 109.46931 * 330.00459 * 15 13 11 19 19 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 20 20 C 1.34780 * 119.99566 * 275.00168 * 19 2 1 21 21 O 1.21280 * 120.00423 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99795 * 180.02562 * 20 19 2 23 23 C 1.50703 * 109.47064 * 179.97438 * 22 20 19 24 24 C 1.34852 * 125.88922 * 274.68606 * 23 22 20 25 25 C 1.40892 * 107.41664 * 179.88544 * 24 23 22 26 26 C 1.34854 * 107.41763 * 0.38108 * 25 24 23 27 27 N 1.36339 * 125.89151 * 94.99879 * 23 22 20 28 28 H 0.97003 * 125.63769 * 359.95878 * 27 23 22 29 29 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 30 30 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 32 32 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 34 34 H 1.09002 * 109.47285 * 299.99610 * 5 4 2 35 35 H 1.09000 * 109.47465 * 59.99400 * 5 4 2 36 36 H 0.96998 * 119.99873 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47139 * 300.00676 * 9 7 6 38 38 H 1.09000 * 109.47156 * 59.99592 * 9 7 6 39 39 H 0.97009 * 120.00106 * 179.97438 * 14 13 11 40 40 H 0.96995 * 120.00423 * 94.99474 * 19 2 1 41 41 H 1.09002 * 109.47060 * 299.99722 * 22 20 19 42 42 H 1.09001 * 109.47380 * 59.99809 * 22 20 19 43 43 H 1.08003 * 126.29285 * 0.02790 * 24 23 22 44 44 H 1.07999 * 126.29338 * 180.13129 * 25 24 23 45 45 H 1.07994 * 125.89268 * 179.72770 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 7 4.0531 -1.3042 -2.5098 7 6 5.3740 -1.3396 -2.7754 8 8 6.1584 -0.7998 -2.0242 9 6 5.8763 -2.0499 -4.0059 10 16 7.6802 -1.9224 -4.0821 11 6 7.9872 -2.8122 -5.5716 12 1 7.1635 -3.2348 -6.1278 13 6 9.2877 -2.9701 -6.0302 14 7 9.5170 -3.6344 -7.1431 15 14 10.7124 -2.2386 -5.0687 16 1 11.2044 -3.2319 -4.0804 17 1 11.8105 -1.8846 -6.0034 18 1 10.2548 -1.0178 -4.3576 19 7 2.0184 -0.6907 1.1960 20 6 2.1471 -0.0184 2.3571 21 8 1.8590 1.1584 2.4116 22 6 2.6500 -0.7288 3.5873 23 6 2.7011 0.2396 4.7409 24 6 3.7200 1.0755 5.0268 25 6 3.3588 1.8021 6.1786 26 6 2.1367 1.3765 6.5577 27 7 1.7279 0.4174 5.6790 28 1 0.8839 -0.0594 5.7151 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.7516 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8532 0.4371 -1.3574 35 1 3.9994 -1.0727 -0.4261 36 1 3.4258 -1.7356 -3.1108 37 1 5.5882 -3.1003 -3.9622 38 1 5.4414 -1.5906 -4.8936 39 1 10.4259 -3.7444 -7.4638 40 1 2.2490 -1.6318 1.1524 41 1 1.9778 -1.5511 3.8324 42 1 3.6493 -1.1205 3.3977 43 1 4.6422 1.1721 4.4731 44 1 3.9534 2.5579 6.6702 45 1 1.5783 1.7333 7.4105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295826656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = -70.902970 kcal Electronic energy + Delta-G solvation = -25535.552209 eV Core-core repulsion = 21678.320711 eV Total energy + Delta-G solvation = -3857.231498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.06035 -40.83451 -40.43161 -37.66657 -35.57884 -34.66568 -33.45303 -32.20283 -31.80460 -31.20462 -29.22507 -27.83631 -27.44503 -24.46883 -22.61440 -21.87236 -21.48818 -21.43981 -20.98748 -19.88642 -18.52807 -18.15230 -17.78793 -17.35207 -17.10021 -17.00416 -16.61924 -16.19297 -15.67772 -15.26939 -15.13991 -14.97185 -14.80089 -14.58877 -14.48271 -14.33337 -14.24383 -13.74832 -13.61923 -13.34231 -13.31208 -13.13123 -13.01389 -12.94708 -12.71362 -12.51867 -12.41141 -12.35067 -11.92205 -11.85191 -11.16645 -11.01443 -10.91413 -10.52067 -10.18847 -10.03246 -9.72665 -8.98903 -8.92848 -8.51133 -6.21668 1.00304 1.28768 1.31448 1.47597 1.56686 1.57951 1.67425 2.03688 2.22638 2.26935 2.35393 2.57112 2.72955 2.87262 3.70515 3.77657 3.78827 3.99969 4.05745 4.15279 4.23332 4.25918 4.44277 4.45961 4.49047 4.50002 4.55784 4.63588 4.65917 4.82451 4.86037 4.90413 5.05102 5.14448 5.31063 5.34876 5.41692 5.42208 5.56973 5.71229 6.07303 6.11977 6.21149 6.49575 6.58370 6.83036 6.94434 7.22308 7.31321 8.61032 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.001857 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.597314 B =15073.050603 C =16514.262949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.063 0.937 4 C -0.122 4.122 5 C 0.120 3.880 6 N -0.709 5.709 7 C 0.532 3.468 8 O -0.566 6.566 9 C -0.111 4.111 10 S -0.181 6.181 11 C -0.528 4.528 12 H 0.064 0.936 13 C 0.046 3.954 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.238 1.238 19 N -0.716 5.716 20 C 0.511 3.489 21 O -0.576 6.576 22 C -0.068 4.068 23 C 0.023 3.977 24 C -0.217 4.217 25 C -0.232 4.232 26 C -0.009 4.009 27 N -0.547 5.547 28 H 0.425 0.575 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.419 0.581 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.416 0.584 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.138 0.862 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 3.010 23.308 34.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.160 4.160 5 C -0.004 4.004 6 N -0.363 5.363 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.261 4.261 10 S 0.046 5.954 11 C -0.675 4.675 12 H 0.082 0.918 13 C -0.159 4.159 14 N -0.554 5.554 15 Si 0.735 3.265 16 H -0.186 1.186 17 H -0.184 1.184 18 H -0.162 1.162 19 N -0.369 5.369 20 C 0.298 3.702 21 O -0.455 6.455 22 C -0.109 4.109 23 C -0.090 4.090 24 C -0.242 4.242 25 C -0.256 4.256 26 C -0.140 4.140 27 N -0.143 5.143 28 H 0.264 0.736 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.257 0.743 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.156 0.844 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -24.017 4.588 24.446 34.576 hybrid contribution -0.268 -1.013 -1.294 1.665 sum -24.284 3.576 23.152 33.742 Atomic orbital electron populations 1.22078 0.93704 1.03206 1.02217 1.20831 0.94862 0.96571 0.83693 0.91918 1.22036 0.91934 1.03781 0.98289 1.21388 0.95437 0.96401 0.87154 1.45690 1.05965 1.57071 1.27617 1.19998 0.83151 0.79337 0.85735 1.90705 1.56630 1.46679 1.50444 1.23274 0.97973 1.05103 0.99798 1.84778 1.04660 1.73209 1.32770 1.22459 0.96786 1.39177 1.09126 0.91791 1.25540 1.00784 0.94301 0.95295 1.70012 1.22694 1.40672 1.22022 0.85887 0.79768 0.81228 0.79619 1.18634 1.18440 1.16241 1.46043 1.67126 1.14766 1.08973 1.20984 0.76835 0.86957 0.85428 1.90735 1.51223 1.17954 1.85616 1.20222 1.06239 0.96696 0.87694 1.19783 0.90946 1.03481 0.94813 1.20877 1.00563 1.01707 1.01064 1.21156 0.98492 1.05490 1.00469 1.22253 0.97726 0.95433 0.98614 1.41906 1.17238 1.32730 1.22397 0.73648 0.90451 0.90441 0.94189 0.87571 0.87810 0.93689 0.91950 0.74289 0.86508 0.86793 0.91394 0.74677 0.84789 0.85248 0.85987 0.84422 0.78953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.48 71.98 0.68 -0.81 16 2 C 0.15 1.74 2.57 44.99 0.12 1.85 16 3 H 0.06 1.17 7.58 -2.38 -0.02 1.15 16 4 C -0.12 -1.02 4.87 30.59 0.15 -0.87 16 5 C 0.12 2.10 5.56 86.38 0.48 2.58 16 6 N -0.71 -14.24 5.56 -463.07 -2.57 -16.81 16 7 C 0.53 17.29 7.85 87.66 0.69 17.98 16 8 O -0.57 -23.83 15.86 -3.03 -0.05 -23.88 16 9 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16 10 S -0.18 -9.02 18.55 -56.49 -1.05 -10.06 16 11 C -0.53 -30.36 10.04 67.95 0.68 -29.67 16 12 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 13 C 0.05 2.70 5.50 84.86 0.47 3.16 16 14 N -0.92 -55.33 13.97 21.65 0.30 -55.03 16 15 Si 0.91 44.88 27.74 68.60 1.90 46.78 16 16 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 19 N -0.72 -7.76 4.53 -442.53 -2.00 -9.76 16 20 C 0.51 8.58 7.79 87.66 0.68 9.26 16 21 O -0.58 -15.64 15.70 -3.03 -0.05 -15.68 16 22 C -0.07 -0.77 6.24 29.10 0.18 -0.58 16 23 C 0.02 0.41 5.66 41.08 0.23 0.65 16 24 C -0.22 -4.92 10.76 22.14 0.24 -4.68 16 25 C -0.23 -4.71 10.86 22.14 0.24 -4.47 16 26 C -0.01 -0.13 11.94 83.21 0.99 0.86 16 27 N -0.55 -7.57 6.07 -182.76 -1.11 -8.68 16 28 H 0.42 3.04 8.96 -92.71 -0.83 2.21 16 29 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 36 H 0.42 5.24 8.47 -92.71 -0.79 4.45 16 37 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.11 3.72 8.14 -2.39 -0.02 3.71 16 39 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 40 H 0.42 2.01 8.60 -92.71 -0.80 1.21 16 41 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 45 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -87.75 397.51 0.22 -87.53 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -1.43 Total: 13.85 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 6.27 Total: -8.26 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -5.39 Total: -90.28 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.10 Total: -39.56 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.06 kcal Total: -87.75 0.22 -87.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295826656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.628 kcal (2) G-P(sol) polarization free energy of solvation -87.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds