Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47851 * 2 1 4 4 C 1.47207 * 109.47142 * 239.99961 * 2 1 3 5 5 N 2.60800 * 109.46878 * 239.99777 * 2 1 3 6 6 C 1.50707 * 109.47102 * 120.00256 * 2 1 3 7 7 O 1.21278 * 119.99753 * 106.34160 * 6 2 1 8 8 N 1.34769 * 119.99647 * 286.34254 * 6 2 1 9 9 C 1.46495 * 120.00319 * 4.77928 * 8 6 2 10 10 C 1.46507 * 119.99833 * 184.78781 * 8 6 2 11 11 C 1.53000 * 109.46640 * 269.99322 * 10 8 6 12 12 H 1.08991 * 110.92115 * 302.55533 * 11 10 8 13 13 C 1.55162 * 111.00072 * 178.64683 * 11 10 8 14 14 C 1.54317 * 102.85946 * 206.23056 * 13 11 10 15 15 N 1.47022 * 107.27930 * 22.53383 * 14 13 11 16 16 C 1.34772 * 125.64853 * 180.96855 * 15 14 13 17 17 O 1.21279 * 120.00043 * 179.68515 * 16 15 14 18 18 C 1.50704 * 120.00148 * 359.68718 * 16 15 14 19 19 S 1.80999 * 109.47078 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99982 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99726 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00193 * 179.72266 * 20 19 18 23 23 N 1.31629 * 119.99618 * 0.28093 * 22 20 19 24 24 Si 1.86799 * 119.99938 * 180.27584 * 22 20 19 25 25 H 1.48499 * 109.47102 * 60.00447 * 24 22 20 26 26 H 1.48507 * 109.46789 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47357 * 299.99819 * 24 22 20 28 28 C 1.47421 * 108.70336 * 0.69602 * 15 14 13 29 29 H 1.09001 * 109.47596 * 170.25207 * 1 2 3 30 30 H 1.08999 * 109.47221 * 290.25352 * 1 2 3 31 31 H 1.09003 * 109.47372 * 50.24957 * 1 2 3 32 32 H 1.08998 * 109.47640 * 267.31226 * 9 8 6 33 33 H 1.09000 * 109.47374 * 27.31680 * 9 8 6 34 34 H 1.09005 * 109.47282 * 147.31145 * 9 8 6 35 35 H 1.09000 * 109.46939 * 149.99796 * 10 8 6 36 36 H 1.08995 * 109.47261 * 29.99457 * 10 8 6 37 37 H 1.08998 * 110.71873 * 324.78873 * 13 11 10 38 38 H 1.09001 * 110.71680 * 87.88806 * 13 11 10 39 39 H 1.09000 * 109.98915 * 263.04785 * 14 13 11 40 40 H 1.09007 * 109.77263 * 141.88984 * 14 13 11 41 41 H 1.08998 * 109.46812 * 60.00229 * 18 16 15 42 42 H 1.09001 * 109.46795 * 300.00012 * 18 16 15 43 43 H 0.97001 * 119.99884 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.36312 * 94.93868 * 28 15 14 45 45 H 1.08994 * 110.37232 * 217.15664 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2295 -2.1294 6 6 2.0323 -0.7105 1.2305 7 8 2.5130 -1.8199 1.1363 8 7 1.9472 -0.1129 2.4355 9 6 1.2727 1.1810 2.5655 10 6 2.5295 -0.7573 3.6154 11 6 1.4823 -1.6580 4.2734 12 1 0.5931 -1.0883 4.5430 13 6 2.0728 -2.3858 5.5100 14 6 1.2075 -3.6600 5.6043 15 7 0.6377 -3.9006 4.2705 16 6 -0.1925 -4.9100 3.9414 17 8 -0.6075 -5.0082 2.8061 18 6 -0.6053 -5.9166 4.9843 19 16 -1.7139 -7.1377 4.2387 20 6 -2.0290 -8.1600 5.6388 21 1 -1.5730 -7.9285 6.5900 22 6 -2.8674 -9.2598 5.5204 23 7 -3.4227 -9.5423 4.3609 24 14 -3.2076 -10.3391 7.0066 25 1 -3.8348 -9.5236 8.0775 26 1 -4.1266 -11.4395 6.6193 27 1 -1.9315 -10.9128 7.5043 28 6 1.1196 -2.8511 3.3542 29 1 -0.3634 -1.0128 -0.1740 30 1 -0.3633 0.3557 0.9641 31 1 -0.3634 0.6571 -0.7901 32 1 2.0041 1.9834 2.4691 33 1 0.5206 1.2790 1.7827 34 1 0.7914 1.2434 3.5415 35 1 2.8501 0.0055 4.3249 36 1 3.3881 -1.3578 3.3149 37 1 3.1204 -2.6379 5.3452 38 1 1.9608 -1.7758 6.4063 39 1 0.4064 -3.5135 6.3288 40 1 1.8278 -4.5059 5.9005 41 1 -1.1208 -5.4062 5.7978 42 1 0.2797 -6.4198 5.3738 43 1 -4.0089 -10.3107 4.2782 44 1 2.0014 -3.1952 2.8136 45 1 0.3333 -2.5678 2.6546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296836107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -31.274211 kcal Electronic energy + Delta-G solvation = -26954.988852 eV Core-core repulsion = 23099.475786 eV Total energy + Delta-G solvation = -3855.513066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93097 -39.58469 -37.53739 -36.78553 -36.00520 -33.93588 -32.40224 -32.12816 -29.59636 -29.22514 -27.46884 -26.31599 -25.46651 -25.13652 -23.09856 -21.16767 -20.16300 -19.26249 -18.05021 -17.83793 -17.65561 -16.67097 -16.53880 -15.96127 -15.60846 -15.11847 -14.89436 -14.77851 -14.52071 -14.38375 -13.87956 -13.72555 -13.61303 -13.37892 -13.15645 -13.06361 -12.99225 -12.86925 -12.58789 -12.55885 -12.35074 -12.14141 -11.98156 -11.85829 -11.71721 -11.59499 -11.16258 -11.02067 -11.00852 -10.94532 -10.74244 -10.16418 -9.79426 -9.35564 -9.15320 -9.03149 -8.38343 -8.19312 -6.46576 -6.18357 -3.88884 2.04166 2.07009 2.49556 2.74469 2.99248 3.15542 3.25207 3.28157 3.31332 3.41996 3.67434 3.91758 4.22711 4.26813 4.33804 4.36597 4.42527 4.49212 4.51586 4.81103 4.88421 4.94414 5.05309 5.11542 5.13240 5.15732 5.16481 5.21076 5.31982 5.42942 5.52418 5.58103 5.62509 5.67664 5.79911 5.87495 5.96217 6.00168 6.16291 6.18492 6.52755 6.74596 7.24912 7.61857 7.63145 7.77462 8.37955 8.65413 9.26401 10.89066 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.002405 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.138203 B =11637.444515 C =12717.015308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.009 4.009 3 H 0.136 0.864 4 C 0.217 3.783 5 N -0.406 5.406 6 C 0.520 3.480 7 O -0.510 6.510 8 N -0.613 5.613 9 C 0.059 3.941 10 C 0.129 3.871 11 C -0.121 4.121 12 H 0.086 0.914 13 C -0.122 4.122 14 C 0.103 3.897 15 N -0.628 5.628 16 C 0.546 3.454 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.118 3.882 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.826 29.460 1.731 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 H 0.154 0.846 4 C -0.102 4.102 5 N -0.081 5.081 6 C 0.305 3.695 7 O -0.384 6.384 8 N -0.347 5.347 9 C -0.083 4.083 10 C 0.006 3.994 11 C -0.142 4.142 12 H 0.105 0.895 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.366 5.366 16 C 0.335 3.665 17 O -0.389 6.389 18 C -0.296 4.296 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.005 4.005 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.870 27.695 -1.552 30.172 hybrid contribution 0.065 -0.294 2.822 2.838 sum 11.936 27.401 1.270 29.915 Atomic orbital electron populations 1.22009 0.89337 1.05287 1.04528 1.18818 0.99048 0.99784 0.85663 0.84631 1.28038 0.94074 0.94064 0.94052 1.81220 1.07627 1.07325 1.11954 1.20035 0.79303 0.86140 0.84004 1.90826 1.43606 1.18384 1.85562 1.47717 1.57718 1.21890 1.07371 1.22203 0.97784 0.84004 1.04321 1.21495 0.95785 0.96224 0.85896 1.22838 0.99245 0.96182 0.95898 0.89528 1.22623 0.99815 0.95772 0.97854 1.21953 0.96971 0.97648 0.85533 1.48534 1.48764 1.28270 1.11016 1.20007 0.76931 0.80277 0.89308 1.90711 1.53697 1.73191 1.21332 1.23500 1.04933 1.00397 1.00782 1.85420 1.56178 1.25813 1.16043 1.22820 1.34283 1.14343 0.96873 0.91019 1.24993 0.94938 0.96801 0.96866 1.70014 1.29410 1.27416 1.23453 0.86225 0.78315 0.79412 0.81540 1.19953 1.20816 1.19945 1.22273 1.00087 0.86015 0.92101 0.90317 0.89312 0.89888 0.91939 0.89627 0.90386 0.89479 0.89250 0.90231 0.89839 0.91339 0.91295 0.89427 0.89393 0.92145 0.90172 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 8.74 37.15 0.32 -0.35 16 2 C -0.01 -0.05 2.29 -94.56 -0.22 -0.27 16 3 H 0.14 0.20 7.72 -51.93 -0.40 -0.20 16 4 C 0.22 2.29 13.90 -20.76 -0.29 2.00 16 5 N -0.41 -5.69 18.54 42.15 0.78 -4.91 16 6 C 0.52 4.40 6.41 -10.99 -0.07 4.33 16 7 O -0.51 -6.92 13.27 5.56 0.07 -6.84 16 8 N -0.61 -3.29 2.83 -181.57 -0.51 -3.81 16 9 C 0.06 0.08 9.85 59.84 0.59 0.67 16 10 C 0.13 0.73 5.02 -4.04 -0.02 0.71 16 11 C -0.12 -0.94 3.29 -88.46 -0.29 -1.23 16 12 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 13 C -0.12 -0.86 6.42 -24.90 -0.16 -1.02 16 14 C 0.10 1.12 6.48 -3.07 -0.02 1.10 16 15 N -0.63 -9.77 3.33 -170.52 -0.57 -10.33 16 16 C 0.55 11.32 7.87 -10.99 -0.09 11.23 16 17 O -0.52 -12.84 16.12 5.56 0.09 -12.75 16 18 C -0.15 -3.13 5.35 36.01 0.19 -2.94 16 19 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.56 9.50 30.94 0.29 -15.26 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.12 1.58 4.91 -2.53 -0.01 1.56 16 29 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.09 0.22 5.50 -51.93 -0.29 -0.06 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.09 0.01 4.17 -51.93 -0.22 -0.20 16 34 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16 35 H 0.09 0.24 8.07 -51.93 -0.42 -0.18 16 36 H 0.09 0.66 7.45 -51.93 -0.39 0.28 16 37 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 43 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.08 1.23 6.46 -51.93 -0.34 0.89 16 45 H 0.07 1.04 8.03 -51.93 -0.42 0.63 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -41.36 387.15 -7.31 -48.67 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -6.65 Total: -5.24 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 0.14 Total: 2.57 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.43 Total: -44.97 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.16 Total: -19.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -41.36 -7.31 -48.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.394 kcal (2) G-P(sol) polarization free energy of solvation -41.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds