Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47851 * 2 1 4 4 C 1.47207 * 109.47142 * 239.99961 * 2 1 3 5 5 N 2.60800 * 109.46878 * 239.99777 * 2 1 3 6 6 C 1.50707 * 109.47102 * 120.00256 * 2 1 3 7 7 O 1.21278 * 119.99753 * 106.34160 * 6 2 1 8 8 N 1.34769 * 119.99647 * 286.34254 * 6 2 1 9 9 C 1.46495 * 120.00319 * 4.77928 * 8 6 2 10 10 C 1.46507 * 119.99833 * 184.78781 * 8 6 2 11 11 C 1.53000 * 109.46640 * 269.99322 * 10 8 6 12 12 H 1.08991 * 110.92115 * 302.55533 * 11 10 8 13 13 C 1.55162 * 111.00072 * 178.64683 * 11 10 8 14 14 C 1.54317 * 102.85946 * 206.23056 * 13 11 10 15 15 N 1.47022 * 107.27930 * 22.53383 * 14 13 11 16 16 C 1.34772 * 125.64853 * 180.96855 * 15 14 13 17 17 O 1.21279 * 120.00043 * 179.68515 * 16 15 14 18 18 C 1.50704 * 120.00148 * 359.68718 * 16 15 14 19 19 S 1.80999 * 109.47078 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99982 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99726 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00193 * 179.72266 * 20 19 18 23 23 N 1.31629 * 119.99618 * 0.28093 * 22 20 19 24 24 Si 1.86799 * 119.99938 * 180.27584 * 22 20 19 25 25 H 1.48499 * 109.47102 * 60.00447 * 24 22 20 26 26 H 1.48507 * 109.46789 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47357 * 299.99819 * 24 22 20 28 28 C 1.47421 * 108.70336 * 0.69602 * 15 14 13 29 29 H 1.09001 * 109.47596 * 170.25207 * 1 2 3 30 30 H 1.08999 * 109.47221 * 290.25352 * 1 2 3 31 31 H 1.09003 * 109.47372 * 50.24957 * 1 2 3 32 32 H 1.08998 * 109.47640 * 267.31226 * 9 8 6 33 33 H 1.09000 * 109.47374 * 27.31680 * 9 8 6 34 34 H 1.09005 * 109.47282 * 147.31145 * 9 8 6 35 35 H 1.09000 * 109.46939 * 149.99796 * 10 8 6 36 36 H 1.08995 * 109.47261 * 29.99457 * 10 8 6 37 37 H 1.08998 * 110.71873 * 324.78873 * 13 11 10 38 38 H 1.09001 * 110.71680 * 87.88806 * 13 11 10 39 39 H 1.09000 * 109.98915 * 263.04785 * 14 13 11 40 40 H 1.09007 * 109.77263 * 141.88984 * 14 13 11 41 41 H 1.08998 * 109.46812 * 60.00229 * 18 16 15 42 42 H 1.09001 * 109.46795 * 300.00012 * 18 16 15 43 43 H 0.97001 * 119.99884 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.36312 * 94.93868 * 28 15 14 45 45 H 1.08994 * 110.37232 * 217.15664 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2295 -2.1294 6 6 2.0323 -0.7105 1.2305 7 8 2.5130 -1.8199 1.1363 8 7 1.9472 -0.1129 2.4355 9 6 1.2727 1.1810 2.5655 10 6 2.5295 -0.7573 3.6154 11 6 1.4823 -1.6580 4.2734 12 1 0.5931 -1.0883 4.5430 13 6 2.0728 -2.3858 5.5100 14 6 1.2075 -3.6600 5.6043 15 7 0.6377 -3.9006 4.2705 16 6 -0.1925 -4.9100 3.9414 17 8 -0.6075 -5.0082 2.8061 18 6 -0.6053 -5.9166 4.9843 19 16 -1.7139 -7.1377 4.2387 20 6 -2.0290 -8.1600 5.6388 21 1 -1.5730 -7.9285 6.5900 22 6 -2.8674 -9.2598 5.5204 23 7 -3.4227 -9.5423 4.3609 24 14 -3.2076 -10.3391 7.0066 25 1 -3.8348 -9.5236 8.0775 26 1 -4.1266 -11.4395 6.6193 27 1 -1.9315 -10.9128 7.5043 28 6 1.1196 -2.8511 3.3542 29 1 -0.3634 -1.0128 -0.1740 30 1 -0.3633 0.3557 0.9641 31 1 -0.3634 0.6571 -0.7901 32 1 2.0041 1.9834 2.4691 33 1 0.5206 1.2790 1.7827 34 1 0.7914 1.2434 3.5415 35 1 2.8501 0.0055 4.3249 36 1 3.3881 -1.3578 3.3149 37 1 3.1204 -2.6379 5.3452 38 1 1.9608 -1.7758 6.4063 39 1 0.4064 -3.5135 6.3288 40 1 1.8278 -4.5059 5.9005 41 1 -1.1208 -5.4062 5.7978 42 1 0.2797 -6.4198 5.3738 43 1 -4.0089 -10.3107 4.2782 44 1 2.0014 -3.1952 2.8136 45 1 0.3333 -2.5678 2.6546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296836107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -61.943796 kcal Electronic energy + Delta-G solvation = -26956.318785 eV Core-core repulsion = 23099.475786 eV Total energy + Delta-G solvation = -3856.842999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60270 -40.81668 -38.69788 -37.71622 -36.66601 -34.64473 -34.60437 -33.12615 -30.89272 -30.22511 -27.88062 -27.69141 -27.01203 -25.74394 -24.08481 -21.87645 -20.85996 -20.63302 -19.59895 -18.63877 -18.39944 -18.09556 -17.49449 -16.90449 -16.65358 -16.55099 -16.43997 -15.76958 -15.52317 -15.42481 -15.11523 -14.69951 -14.46227 -14.33591 -14.18291 -13.97398 -13.85357 -13.74893 -13.52969 -13.39363 -13.35278 -13.18745 -13.12997 -12.87461 -12.68957 -12.64537 -12.50675 -12.41790 -12.08545 -11.95537 -11.75983 -11.58611 -11.14648 -11.01307 -10.80214 -10.31967 -9.70917 -9.62020 -8.72241 -8.36240 -6.16415 1.21688 1.38622 1.43055 1.43579 1.45419 1.52797 1.54345 1.68622 2.09746 2.17163 2.25668 2.78189 2.97588 3.21244 3.41975 3.57867 3.63240 3.84315 3.89575 3.93217 4.08727 4.17923 4.33278 4.34543 4.37960 4.41977 4.46808 4.58298 4.70391 4.71414 4.77973 4.80945 4.90641 4.95822 5.02355 5.09198 5.11799 5.31240 5.35086 5.38731 5.42136 5.58871 6.17473 6.26948 6.39130 6.47872 7.03944 7.07120 7.09818 8.73111 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017109 B = 0.002405 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.138203 B =11637.444515 C =12717.015308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.004 4.004 3 H 0.193 0.807 4 C 0.239 3.761 5 N -0.481 5.481 6 C 0.511 3.489 7 O -0.576 6.576 8 N -0.604 5.604 9 C 0.048 3.952 10 C 0.129 3.871 11 C -0.104 4.104 12 H 0.105 0.895 13 C -0.108 4.108 14 C 0.085 3.915 15 N -0.620 5.620 16 C 0.539 3.461 17 O -0.574 6.574 18 C -0.115 4.115 19 S -0.157 6.157 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 1.003 2.997 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.262 1.262 28 C 0.116 3.884 29 H 0.038 0.962 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.272 0.728 44 H 0.055 0.945 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.531 33.111 5.876 35.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 H 0.209 0.791 4 C -0.079 4.079 5 N -0.157 5.157 6 C 0.297 3.703 7 O -0.455 6.455 8 N -0.335 5.335 9 C -0.092 4.092 10 C 0.006 3.994 11 C -0.124 4.124 12 H 0.123 0.877 13 C -0.146 4.146 14 C -0.036 4.036 15 N -0.355 5.355 16 C 0.327 3.673 17 O -0.453 6.453 18 C -0.266 4.266 19 S 0.070 5.930 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.183 1.183 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.007 4.007 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.605 31.445 2.656 33.981 hybrid contribution -0.088 -1.291 1.567 2.032 sum 12.517 30.154 4.223 32.920 Atomic orbital electron populations 1.22070 0.88090 1.03660 1.07037 1.19234 0.99747 1.01445 0.82369 0.79064 1.29024 0.92221 0.92585 0.94081 1.81214 1.10166 1.09645 1.14638 1.20523 0.78606 0.85523 0.85624 1.90814 1.46819 1.21256 1.86617 1.47845 1.56696 1.22858 1.06146 1.22582 0.98685 0.82183 1.05781 1.21587 0.94231 0.96974 0.86599 1.22838 1.00720 0.94139 0.94735 0.87718 1.22668 0.99188 0.93838 0.98922 1.22433 0.98100 1.00118 0.82984 1.48576 1.46524 1.26735 1.13650 1.19905 0.77805 0.81307 0.88251 1.90683 1.56430 1.74884 1.23304 1.23273 1.03748 0.98803 1.00808 1.85667 1.58988 1.29147 1.19175 1.23151 1.34692 1.14663 0.96827 0.89769 1.26201 0.94302 0.98324 1.00471 1.70195 1.30237 1.28220 1.26267 0.84951 0.78598 0.77080 0.77019 1.18284 1.20365 1.18647 1.22386 0.97843 0.87737 0.92700 0.94246 0.86684 0.87298 0.89252 0.88445 0.88776 0.84755 0.91428 0.89449 0.85678 0.89821 0.91051 0.87178 0.87866 0.91949 0.92720 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.74 71.98 0.63 -0.49 16 2 C 0.00 -0.04 2.29 -13.34 -0.03 -0.07 16 3 H 0.19 -0.23 7.72 -2.39 -0.02 -0.25 16 4 C 0.24 5.27 13.90 89.44 1.24 6.51 16 5 N -0.48 -14.55 18.54 20.01 0.37 -14.18 16 6 C 0.51 8.33 6.41 87.66 0.56 8.90 16 7 O -0.58 -16.73 13.27 -3.02 -0.04 -16.77 16 8 N -0.60 -4.68 2.83 -846.76 -2.39 -7.07 16 9 C 0.05 -0.12 9.85 127.77 1.26 1.14 16 10 C 0.13 1.03 5.02 86.38 0.43 1.46 16 11 C -0.10 -1.30 3.29 -9.40 -0.03 -1.33 16 12 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 13 C -0.11 -1.06 6.42 31.78 0.20 -0.85 16 14 C 0.09 1.64 6.48 86.73 0.56 2.20 16 15 N -0.62 -19.29 3.33 -811.80 -2.70 -21.99 16 16 C 0.54 23.18 7.87 87.66 0.69 23.87 16 17 O -0.57 -30.68 16.12 -3.03 -0.05 -30.73 16 18 C -0.12 -5.02 5.35 71.24 0.38 -4.64 16 19 S -0.16 -9.23 20.57 -56.49 -1.16 -10.39 16 20 C -0.55 -32.11 9.50 67.95 0.65 -31.46 16 21 H 0.08 4.56 7.80 -2.91 -0.02 4.54 16 22 C 0.01 0.68 5.49 84.86 0.47 1.14 16 23 N -0.91 -57.65 13.22 21.65 0.29 -57.36 16 24 Si 1.00 44.30 29.55 68.60 2.03 46.32 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 C 0.12 3.16 4.91 86.86 0.43 3.58 16 29 H 0.04 0.62 8.10 -2.39 -0.02 0.61 16 30 H 0.11 0.24 5.50 -2.39 -0.01 0.23 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.10 -0.46 4.17 -2.39 -0.01 -0.47 16 34 H 0.09 -0.43 8.09 -2.38 -0.02 -0.45 16 35 H 0.13 -0.08 8.07 -2.39 -0.02 -0.10 16 36 H 0.07 0.90 7.45 -2.39 -0.02 0.89 16 37 H 0.09 0.78 8.04 -2.39 -0.02 0.77 16 38 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.11 4.25 8.14 -2.40 -0.02 4.23 16 42 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.05 1.81 6.46 -2.39 -0.02 1.79 16 45 H 0.04 1.31 8.03 -2.39 -0.02 1.29 16 Total: -1.00 -102.55 387.15 4.78 -97.77 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.00 Total: 4.45 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 7.44 Total: 9.96 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.44 Total: -100.60 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.09 Total: -47.50 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal Total: -102.55 4.78 -97.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.825 kcal (2) G-P(sol) polarization free energy of solvation -102.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds