Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47063 * 2 1 4 4 C 1.47199 * 109.47335 * 120.00581 * 2 1 3 5 5 N 2.60798 * 109.47110 * 120.00449 * 2 1 3 6 6 C 1.50709 * 109.46833 * 240.00353 * 2 1 3 7 7 O 1.21280 * 119.99588 * 239.99608 * 6 2 1 8 8 N 1.34773 * 119.99920 * 60.00217 * 6 2 1 9 9 C 1.46505 * 119.99877 * 359.97438 * 8 6 2 10 10 C 1.46495 * 119.99964 * 179.97438 * 8 6 2 11 11 C 1.52995 * 109.47220 * 269.99844 * 10 8 6 12 12 H 1.09007 * 110.91523 * 57.44627 * 11 10 8 13 13 C 1.55158 * 111.00729 * 181.34985 * 11 10 8 14 14 C 1.54336 * 103.02317 * 153.37983 * 13 11 10 15 15 N 1.47023 * 107.26372 * 338.14145 * 14 13 11 16 16 C 1.34777 * 125.64628 * 178.84576 * 15 14 13 17 17 O 1.21274 * 120.00135 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99766 * 359.69429 * 16 15 14 19 19 S 1.81003 * 109.46851 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99843 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00458 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47358 * 89.99657 * 24 22 20 26 26 H 1.48498 * 109.47273 * 210.00381 * 24 22 20 27 27 H 1.48505 * 109.46671 * 329.99771 * 24 22 20 28 28 C 1.47424 * 108.70410 * 358.58802 * 15 14 13 29 29 H 1.08996 * 109.46995 * 299.99489 * 1 2 3 30 30 H 1.08994 * 109.46770 * 59.99802 * 1 2 3 31 31 H 1.09000 * 109.46525 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47064 * 270.00024 * 9 8 6 33 33 H 1.08993 * 109.47544 * 30.00357 * 9 8 6 34 34 H 1.09002 * 109.46840 * 150.00580 * 9 8 6 35 35 H 1.09003 * 109.47354 * 149.99570 * 10 8 6 36 36 H 1.08999 * 109.47029 * 29.99746 * 10 8 6 37 37 H 1.09002 * 110.72068 * 271.94050 * 13 11 10 38 38 H 1.08996 * 110.72094 * 35.03262 * 13 11 10 39 39 H 1.08996 * 109.99181 * 218.66236 * 14 13 11 40 40 H 1.08998 * 109.77486 * 97.49544 * 14 13 11 41 41 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 42 42 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 43 43 H 0.97002 * 120.00245 * 180.02562 * 23 22 20 44 44 H 1.08995 * 110.37079 * 143.19699 * 28 15 14 45 45 H 1.09006 * 110.35937 * 265.41044 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0208 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0324 -0.7104 -1.2306 7 8 2.7297 -1.6964 -1.1193 8 7 1.7068 -0.2498 -2.4546 9 6 0.8641 0.9411 -2.5889 10 6 2.1955 -0.9400 -3.6508 11 6 3.5431 -0.3471 -4.0670 12 1 4.2673 -0.4195 -3.2555 13 6 4.0783 -1.0308 -5.3529 14 6 4.9702 0.0606 -5.9816 15 7 4.5244 1.3532 -5.4412 16 6 5.0664 2.5534 -5.7280 17 8 4.6152 3.5590 -5.2222 18 6 6.2372 2.6452 -6.6725 19 16 6.7324 4.3767 -6.8531 20 6 8.0775 4.1947 -7.9765 21 1 8.3561 3.2132 -8.3308 22 6 8.7798 5.3125 -8.4052 23 7 9.7850 5.1765 -9.2440 24 14 8.2993 7.0098 -7.7907 25 1 9.0540 7.3190 -6.5496 26 1 8.6194 8.0214 -8.8296 27 1 6.8425 7.0384 -7.5042 28 6 3.3825 1.1198 -4.5385 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.1838 0.6428 -2.6224 33 1 1.0273 1.5997 -1.7360 34 1 1.1218 1.4667 -3.5084 35 1 1.4775 -0.8148 -4.4614 36 1 2.3170 -2.0012 -3.4338 37 1 4.6647 -1.9152 -5.1038 38 1 3.2578 -1.2898 -6.0220 39 1 4.8590 0.0538 -7.0658 40 1 6.0119 -0.1142 -5.7126 41 1 7.0715 2.0679 -6.2741 42 1 5.9510 2.2460 -7.6457 43 1 10.2761 5.9576 -9.5433 44 1 3.4267 1.7990 -3.6872 45 1 2.4424 1.2465 -5.0756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296836108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = -33.624759 kcal Electronic energy + Delta-G solvation = -26575.333601 eV Core-core repulsion = 22719.718607 eV Total energy + Delta-G solvation = -3855.614994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99847 -39.85459 -37.75661 -36.93816 -36.10865 -34.06236 -32.46003 -32.22879 -29.80466 -29.34878 -27.81992 -26.45645 -25.63060 -24.98275 -23.36126 -21.29755 -20.28021 -19.50746 -18.14926 -17.85538 -17.70063 -16.77746 -16.69749 -16.44531 -15.56893 -15.34546 -14.99853 -14.99638 -14.65834 -14.37835 -13.94988 -13.78738 -13.68270 -13.47813 -13.44579 -13.20170 -13.05987 -12.93649 -12.77943 -12.70282 -12.61263 -12.26848 -12.05671 -12.03014 -11.93238 -11.74232 -11.29086 -11.26619 -11.03929 -11.01621 -10.62627 -10.32255 -9.88120 -9.59712 -9.25797 -9.02205 -8.64196 -8.52685 -6.94558 -6.30578 -4.02685 1.94175 1.97949 2.37409 2.64135 2.65609 2.89209 3.17096 3.29615 3.31700 3.48306 3.57602 3.82980 4.12016 4.22379 4.26111 4.31334 4.32534 4.42524 4.54758 4.66906 4.79147 4.79793 4.87969 4.96519 4.99509 5.05374 5.08374 5.13748 5.16292 5.22283 5.32840 5.41513 5.45341 5.53706 5.57432 5.64317 5.75689 5.85083 5.98192 5.99644 6.28560 6.66514 7.12611 7.50868 7.51864 7.92416 8.37798 8.40048 9.15398 10.78595 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002142 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.777637 B =13065.731428 C =13590.163153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 H 0.142 0.858 4 C 0.220 3.780 5 N -0.410 5.410 6 C 0.525 3.475 7 O -0.524 6.524 8 N -0.609 5.609 9 C 0.061 3.939 10 C 0.128 3.872 11 C -0.121 4.121 12 H 0.091 0.909 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.626 5.626 16 C 0.548 3.452 17 O -0.519 6.519 18 C -0.118 4.118 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.115 3.885 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.066 -13.103 12.105 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 H 0.159 0.841 4 C -0.099 4.099 5 N -0.085 5.085 6 C 0.310 3.690 7 O -0.399 6.399 8 N -0.342 5.342 9 C -0.081 4.081 10 C 0.006 3.994 11 C -0.141 4.141 12 H 0.109 0.891 13 C -0.161 4.161 14 C -0.023 4.023 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.394 6.394 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.008 4.008 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.600 -12.773 14.172 29.576 hybrid contribution 0.592 -0.122 -0.979 1.151 sum -22.008 -12.896 13.192 28.718 Atomic orbital electron populations 1.22084 0.89526 1.04579 1.05217 1.18836 0.98965 1.00270 0.85584 0.84072 1.28048 0.93892 0.94000 0.93999 1.81212 1.07509 1.07795 1.11967 1.20020 0.80391 0.84571 0.84033 1.90798 1.37041 1.25913 1.86135 1.47715 1.51367 1.29631 1.05449 1.22254 0.94570 0.86877 1.04405 1.21489 0.94136 0.97720 0.86068 1.22834 0.98049 0.94834 0.98393 0.89082 1.22625 0.99769 0.97811 0.95864 1.22032 0.99008 0.82475 0.98790 1.48472 1.33981 1.06333 1.47490 1.19988 0.83544 0.81290 0.81548 1.90694 1.62365 1.34255 1.52051 1.23259 0.97963 1.04761 1.00864 1.84763 1.42462 1.02695 1.61724 1.22299 1.16041 0.98274 1.30227 0.89384 1.24720 0.93730 0.99169 0.93735 1.69939 1.19413 1.31055 1.31216 0.86727 0.82037 0.83669 0.79371 1.19212 1.19931 1.15924 1.22246 0.89357 0.95570 0.93625 0.90142 0.88862 0.91048 0.91326 0.90188 0.89915 0.89510 0.88879 0.89573 0.90186 0.90918 0.91068 0.88591 0.88540 0.91927 0.90556 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.29 8.78 37.16 0.33 0.03 16 2 C -0.01 -0.06 2.30 -94.55 -0.22 -0.28 16 3 H 0.14 0.28 7.40 -51.93 -0.38 -0.10 16 4 C 0.22 2.01 13.88 -20.76 -0.29 1.72 16 5 N -0.41 -5.09 18.54 42.15 0.78 -4.30 16 6 C 0.52 3.83 7.06 -10.98 -0.08 3.76 16 7 O -0.52 -6.25 15.61 5.56 0.09 -6.16 16 8 N -0.61 -3.02 2.79 -181.57 -0.51 -3.53 16 9 C 0.06 0.12 8.50 59.85 0.51 0.63 16 10 C 0.13 0.68 4.93 -4.05 -0.02 0.66 16 11 C -0.12 -0.88 3.30 -88.47 -0.29 -1.17 16 12 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 13 C -0.12 -0.79 6.42 -24.89 -0.16 -0.95 16 14 C 0.10 0.96 6.49 -3.06 -0.02 0.94 16 15 N -0.63 -8.03 3.33 -170.51 -0.57 -8.60 16 16 C 0.55 9.71 7.87 -10.98 -0.09 9.63 16 17 O -0.52 -10.96 16.12 5.56 0.09 -10.87 16 18 C -0.12 -2.29 5.35 36.01 0.19 -2.09 16 19 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 24 Si 0.86 21.60 27.74 -169.99 -4.72 16.89 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 28 C 0.11 1.09 4.87 -2.53 -0.01 1.08 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.09 -0.01 4.53 -51.93 -0.24 -0.25 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.01 6.95 -51.93 -0.36 -0.35 16 33 H 0.08 0.04 6.01 -51.93 -0.31 -0.27 16 34 H 0.08 0.22 6.07 -51.93 -0.32 -0.10 16 35 H 0.09 0.28 8.03 -51.93 -0.42 -0.14 16 36 H 0.09 0.59 7.42 -51.93 -0.39 0.20 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.39 8.04 -51.93 -0.42 -0.03 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 45 H 0.06 0.52 7.24 -51.93 -0.38 0.15 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -39.16 384.05 -6.77 -45.93 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -6.58 Total: -5.98 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 0.07 Total: 2.04 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.48 Total: -42.04 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.18 Total: -17.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.89 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.16 -6.77 -45.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.305 kcal (2) G-P(sol) polarization free energy of solvation -39.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds