Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47063 * 2 1 4 4 C 1.47199 * 109.47335 * 120.00581 * 2 1 3 5 5 N 2.60798 * 109.47110 * 120.00449 * 2 1 3 6 6 C 1.50709 * 109.46833 * 240.00353 * 2 1 3 7 7 O 1.21280 * 119.99588 * 239.99608 * 6 2 1 8 8 N 1.34773 * 119.99920 * 60.00217 * 6 2 1 9 9 C 1.46505 * 119.99877 * 359.97438 * 8 6 2 10 10 C 1.46495 * 119.99964 * 179.97438 * 8 6 2 11 11 C 1.52995 * 109.47220 * 269.99844 * 10 8 6 12 12 H 1.09007 * 110.91523 * 57.44627 * 11 10 8 13 13 C 1.55158 * 111.00729 * 181.34985 * 11 10 8 14 14 C 1.54336 * 103.02317 * 153.37983 * 13 11 10 15 15 N 1.47023 * 107.26372 * 338.14145 * 14 13 11 16 16 C 1.34777 * 125.64628 * 178.84576 * 15 14 13 17 17 O 1.21274 * 120.00135 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99766 * 359.69429 * 16 15 14 19 19 S 1.81003 * 109.46851 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99843 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00458 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47358 * 89.99657 * 24 22 20 26 26 H 1.48498 * 109.47273 * 210.00381 * 24 22 20 27 27 H 1.48505 * 109.46671 * 329.99771 * 24 22 20 28 28 C 1.47424 * 108.70410 * 358.58802 * 15 14 13 29 29 H 1.08996 * 109.46995 * 299.99489 * 1 2 3 30 30 H 1.08994 * 109.46770 * 59.99802 * 1 2 3 31 31 H 1.09000 * 109.46525 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47064 * 270.00024 * 9 8 6 33 33 H 1.08993 * 109.47544 * 30.00357 * 9 8 6 34 34 H 1.09002 * 109.46840 * 150.00580 * 9 8 6 35 35 H 1.09003 * 109.47354 * 149.99570 * 10 8 6 36 36 H 1.08999 * 109.47029 * 29.99746 * 10 8 6 37 37 H 1.09002 * 110.72068 * 271.94050 * 13 11 10 38 38 H 1.08996 * 110.72094 * 35.03262 * 13 11 10 39 39 H 1.08996 * 109.99181 * 218.66236 * 14 13 11 40 40 H 1.08998 * 109.77486 * 97.49544 * 14 13 11 41 41 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 42 42 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 43 43 H 0.97002 * 120.00245 * 180.02562 * 23 22 20 44 44 H 1.08995 * 110.37079 * 143.19699 * 28 15 14 45 45 H 1.09006 * 110.35937 * 265.41044 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0208 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1293 6 6 2.0324 -0.7104 -1.2306 7 8 2.7297 -1.6964 -1.1193 8 7 1.7068 -0.2498 -2.4546 9 6 0.8641 0.9411 -2.5889 10 6 2.1955 -0.9400 -3.6508 11 6 3.5431 -0.3471 -4.0670 12 1 4.2673 -0.4195 -3.2555 13 6 4.0783 -1.0308 -5.3529 14 6 4.9702 0.0606 -5.9816 15 7 4.5244 1.3532 -5.4412 16 6 5.0664 2.5534 -5.7280 17 8 4.6152 3.5590 -5.2222 18 6 6.2372 2.6452 -6.6725 19 16 6.7324 4.3767 -6.8531 20 6 8.0775 4.1947 -7.9765 21 1 8.3561 3.2132 -8.3308 22 6 8.7798 5.3125 -8.4052 23 7 9.7850 5.1765 -9.2440 24 14 8.2993 7.0098 -7.7907 25 1 9.0540 7.3190 -6.5496 26 1 8.6194 8.0214 -8.8296 27 1 6.8425 7.0384 -7.5042 28 6 3.3825 1.1198 -4.5385 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.1838 0.6428 -2.6224 33 1 1.0273 1.5997 -1.7360 34 1 1.1218 1.4667 -3.5084 35 1 1.4775 -0.8148 -4.4614 36 1 2.3170 -2.0012 -3.4338 37 1 4.6647 -1.9152 -5.1038 38 1 3.2578 -1.2898 -6.0220 39 1 4.8590 0.0538 -7.0658 40 1 6.0119 -0.1142 -5.7126 41 1 7.0715 2.0679 -6.2741 42 1 5.9510 2.2460 -7.6457 43 1 10.2761 5.9576 -9.5433 44 1 3.4267 1.7990 -3.6872 45 1 2.4424 1.2465 -5.0756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296836108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -61.342201 kcal Electronic energy + Delta-G solvation = -26576.535519 eV Core-core repulsion = 22719.718607 eV Total energy + Delta-G solvation = -3856.816912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57206 -40.88291 -38.75613 -37.71053 -36.70272 -34.68527 -34.62287 -33.07178 -30.96835 -30.16265 -28.25800 -27.85761 -26.94941 -25.42792 -24.20457 -21.91053 -20.90556 -20.69766 -19.61133 -18.65457 -18.25381 -18.07706 -17.54752 -17.12629 -16.97983 -16.55941 -16.24705 -15.76176 -15.64398 -15.34788 -15.02410 -14.90396 -14.54695 -14.36668 -14.17991 -14.04968 -13.79831 -13.75955 -13.61409 -13.44229 -13.33131 -13.25397 -13.17222 -13.01513 -12.69483 -12.66864 -12.47343 -12.36831 -12.22350 -11.88659 -11.84475 -11.60645 -11.17588 -11.02187 -10.86549 -10.55737 -9.70412 -9.68938 -9.01348 -8.51921 -6.23413 0.96283 1.31816 1.39170 1.44087 1.46242 1.51373 1.54202 1.69429 2.07986 2.13678 2.24927 2.67180 2.78001 2.86128 3.39275 3.44608 3.60657 3.80282 3.85836 3.94324 4.10065 4.14591 4.28295 4.32815 4.37138 4.40627 4.42406 4.60162 4.71392 4.76397 4.81479 4.83244 4.85510 4.90470 4.97405 5.07730 5.10055 5.25803 5.31874 5.39144 5.53234 5.70045 6.10612 6.23550 6.34948 6.47848 6.92772 7.02474 7.05679 8.60426 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019634 B = 0.002142 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.777637 B =13065.731428 C =13590.163153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.010 4.010 3 H 0.176 0.824 4 C 0.241 3.759 5 N -0.479 5.479 6 C 0.520 3.480 7 O -0.581 6.581 8 N -0.601 5.601 9 C 0.049 3.951 10 C 0.130 3.870 11 C -0.109 4.109 12 H 0.064 0.936 13 C -0.111 4.111 14 C 0.088 3.912 15 N -0.618 5.618 16 C 0.548 3.452 17 O -0.560 6.560 18 C -0.105 4.105 19 S -0.171 6.171 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.916 5.916 24 Si 0.916 3.084 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.234 1.234 28 C 0.112 3.888 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.064 0.936 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.010 -12.850 11.882 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 H 0.193 0.807 4 C -0.077 4.077 5 N -0.155 5.155 6 C 0.307 3.693 7 O -0.460 6.460 8 N -0.332 5.332 9 C -0.092 4.092 10 C 0.007 3.993 11 C -0.130 4.130 12 H 0.083 0.917 13 C -0.149 4.149 14 C -0.034 4.034 15 N -0.352 5.352 16 C 0.336 3.664 17 O -0.439 6.439 18 C -0.256 4.256 19 S 0.055 5.945 20 C -0.677 4.677 21 H 0.079 0.921 22 C -0.161 4.161 23 N -0.554 5.554 24 Si 0.738 3.262 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.158 1.158 28 C -0.009 4.009 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.581 -12.549 13.930 31.716 hybrid contribution 1.468 -0.359 -0.950 1.785 sum -24.113 -12.908 12.979 30.274 Atomic orbital electron populations 1.22155 0.86811 1.04581 1.07271 1.19203 1.00904 1.00786 0.82475 0.80720 1.28936 0.92140 0.92619 0.94003 1.81212 1.09843 1.09995 1.14411 1.20424 0.79644 0.83977 0.85263 1.90781 1.39761 1.28517 1.86979 1.47803 1.50757 1.30047 1.04596 1.22595 0.95514 0.85901 1.05212 1.21523 0.93687 0.97046 0.87015 1.22708 0.98798 0.93572 0.97914 0.91718 1.22637 1.00096 0.96725 0.95467 1.22354 0.99636 0.81753 0.99680 1.48452 1.34039 1.05842 1.46901 1.19559 0.83204 0.82384 0.81302 1.90671 1.63568 1.35959 1.53713 1.23221 0.99366 1.00403 1.02567 1.84631 1.41024 1.08205 1.60611 1.22443 1.17270 0.97256 1.30758 0.92122 1.25597 0.93712 1.02904 0.93915 1.70019 1.20517 1.32485 1.32409 0.85846 0.81709 0.79438 0.79252 1.18811 1.18246 1.15806 1.22514 0.88925 0.96583 0.92911 0.88814 0.86056 0.92114 0.88490 0.88420 0.90073 0.86307 0.89828 0.88636 0.87443 0.89832 0.91545 0.87813 0.87147 0.91345 0.91755 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.08 8.78 71.98 0.63 0.55 16 2 C -0.01 -0.07 2.30 -13.34 -0.03 -0.10 16 3 H 0.18 0.11 7.40 -2.39 -0.02 0.09 16 4 C 0.24 4.36 13.88 89.44 1.24 5.60 16 5 N -0.48 -12.33 18.54 20.01 0.37 -11.96 16 6 C 0.52 6.80 7.06 87.66 0.62 7.41 16 7 O -0.58 -13.91 15.61 -3.03 -0.05 -13.95 16 8 N -0.60 -4.21 2.79 -846.76 -2.36 -6.58 16 9 C 0.05 -0.02 8.50 127.77 1.09 1.07 16 10 C 0.13 0.98 4.93 86.38 0.43 1.40 16 11 C -0.11 -1.33 3.30 -9.40 -0.03 -1.36 16 12 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 13 C -0.11 -1.10 6.42 31.79 0.20 -0.89 16 14 C 0.09 1.48 6.49 86.73 0.56 2.04 16 15 N -0.62 -14.68 3.33 -811.77 -2.70 -17.38 16 16 C 0.55 18.87 7.87 87.66 0.69 19.56 16 17 O -0.56 -23.31 16.12 -3.01 -0.05 -23.35 16 18 C -0.10 -4.00 5.35 71.24 0.38 -3.62 16 19 S -0.17 -8.62 18.55 -56.49 -1.05 -9.67 16 20 C -0.53 -30.79 10.04 67.96 0.68 -30.11 16 21 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 22 C 0.04 2.58 5.50 84.86 0.47 3.05 16 23 N -0.92 -55.63 13.97 21.65 0.30 -55.33 16 24 Si 0.92 44.60 27.74 68.60 1.90 46.51 16 25 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.23 -11.30 6.74 99.48 0.67 -10.63 16 28 C 0.11 1.84 4.87 86.86 0.42 2.26 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.12 -0.62 4.53 -2.39 -0.01 -0.63 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.10 -0.51 6.95 -2.39 -0.02 -0.52 16 33 H 0.10 -0.34 6.01 -2.39 -0.01 -0.36 16 34 H 0.08 0.08 6.07 -2.39 -0.01 0.06 16 35 H 0.12 0.18 8.03 -2.39 -0.02 0.16 16 36 H 0.08 0.88 7.42 -2.39 -0.02 0.86 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.55 8.04 -2.39 -0.02 0.53 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 43 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.06 1.25 8.01 -2.39 -0.02 1.23 16 45 H 0.09 1.09 7.24 -2.38 -0.02 1.07 16 Total: -1.00 -90.05 384.05 4.69 -85.36 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 0.97 Total: -0.49 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 7.35 Total: 6.85 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -4.39 Total: -91.25 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.10 Total: -37.31 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.67 kcal Total: -90.05 4.69 -85.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.018 kcal (2) G-P(sol) polarization free energy of solvation -90.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds