Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 C 1.47196 * 109.47258 * 120.00116 * 2 1 3 5 5 N 2.60798 * 109.47165 * 120.00158 * 2 1 3 6 6 C 1.50699 * 109.47028 * 240.00352 * 2 1 3 7 7 O 1.21290 * 120.00058 * 239.99719 * 6 2 1 8 8 N 1.34773 * 120.00294 * 59.99971 * 6 2 1 9 9 C 1.46498 * 119.99981 * 359.97438 * 8 6 2 10 10 C 1.46509 * 120.00094 * 180.02562 * 8 6 2 11 11 C 1.53006 * 109.46532 * 269.99687 * 10 8 6 12 12 H 1.09001 * 110.88610 * 302.57174 * 11 10 8 13 13 C 1.55162 * 111.00010 * 178.65019 * 11 10 8 14 14 C 1.54317 * 102.86152 * 206.22922 * 13 11 10 15 15 N 1.47021 * 107.27565 * 22.52884 * 14 13 11 16 16 C 1.34778 * 125.64597 * 180.97116 * 15 14 13 17 17 O 1.21278 * 119.99748 * 179.68858 * 16 15 14 18 18 C 1.50697 * 120.00209 * 359.68671 * 16 15 14 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31630 * 119.99849 * 180.27695 * 22 20 19 24 24 Si 1.86800 * 120.00065 * 0.28024 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99557 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00077 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99899 * 24 22 20 28 28 C 1.47426 * 108.70439 * 0.70052 * 15 14 13 29 29 H 1.09001 * 109.47182 * 299.99766 * 1 2 3 30 30 H 1.09004 * 109.47523 * 60.00007 * 1 2 3 31 31 H 1.09006 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47232 * 269.99744 * 9 8 6 33 33 H 1.09000 * 109.46819 * 30.00371 * 9 8 6 34 34 H 1.08998 * 109.47197 * 150.00091 * 9 8 6 35 35 H 1.08991 * 109.47264 * 150.00120 * 10 8 6 36 36 H 1.08996 * 109.46885 * 29.99499 * 10 8 6 37 37 H 1.08997 * 110.71728 * 324.78721 * 13 11 10 38 38 H 1.08997 * 110.71938 * 87.88129 * 13 11 10 39 39 H 1.08996 * 109.98636 * 263.04685 * 14 13 11 40 40 H 1.09000 * 109.76998 * 141.88598 * 14 13 11 41 41 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 42 42 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 43 43 H 0.97005 * 119.99878 * 180.02562 * 23 22 20 44 44 H 1.08997 * 110.36576 * 94.93815 * 28 15 14 45 45 H 1.08997 * 110.36974 * 217.15308 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0322 -0.7103 -1.2305 7 8 2.7296 -1.6965 -1.1193 8 7 1.7066 -0.2499 -2.4546 9 6 0.8640 0.9409 -2.5890 10 6 2.1945 -0.9408 -3.6508 11 6 3.5425 -0.3488 -4.0674 12 1 3.4575 0.7230 -4.2467 13 6 4.1091 -1.0788 -5.3139 14 6 5.6315 -0.8706 -5.1714 15 7 5.9045 -0.6019 -3.7520 16 6 7.1163 -0.3476 -3.2197 17 8 7.2235 -0.1335 -2.0308 18 6 8.3380 -0.3295 -4.1017 19 16 9.8002 0.0368 -3.0997 20 6 11.0440 -0.0041 -4.3471 21 1 10.7743 -0.2123 -5.3719 22 6 12.3695 0.2374 -4.0136 23 7 13.2979 0.2123 -4.9463 24 14 12.8359 0.5982 -2.2410 25 1 13.1513 -0.6743 -1.5434 26 1 14.0257 1.4862 -2.2132 27 1 11.7011 1.2693 -1.5574 28 6 4.6323 -0.6500 -3.0085 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.1839 0.6426 -2.6226 33 1 1.0271 1.5996 -1.7360 34 1 1.1217 1.4665 -3.5084 35 1 1.4766 -0.8152 -4.4612 36 1 2.3153 -2.0020 -3.4335 37 1 3.8569 -2.1389 -5.2876 38 1 3.7406 -0.6188 -6.2308 39 1 5.9498 -0.0223 -5.7773 40 1 6.1578 -1.7718 -5.4860 41 1 8.2214 0.4363 -4.8684 42 1 8.4579 -1.3035 -4.5763 43 1 14.2243 0.3807 -4.7132 44 1 4.4810 -1.6405 -2.5796 45 1 4.6219 0.1076 -2.2250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296836109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -31.867185 kcal Electronic energy + Delta-G solvation = -26912.202212 eV Core-core repulsion = 23056.663433 eV Total energy + Delta-G solvation = -3855.538779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98961 -39.69183 -37.62273 -36.81443 -36.11235 -34.00212 -32.41872 -32.17225 -29.68519 -29.32895 -27.57981 -26.42566 -25.58736 -25.15996 -23.18890 -21.19840 -20.24395 -19.38814 -18.10132 -17.82986 -17.70660 -16.74027 -16.57331 -16.29688 -15.50669 -15.20349 -14.96605 -14.91362 -14.56506 -14.40350 -13.95093 -13.74718 -13.60542 -13.47101 -13.25607 -13.09521 -13.08088 -12.87175 -12.74838 -12.66238 -12.45705 -12.18667 -11.99172 -11.97375 -11.85578 -11.70000 -11.24426 -11.22655 -11.01344 -10.97191 -10.57087 -10.23421 -9.83162 -9.47912 -9.21747 -8.97810 -8.48972 -8.45958 -6.89022 -6.26745 -3.98033 2.00647 2.05025 2.49116 2.71729 2.74533 3.01940 3.25096 3.36323 3.37360 3.53680 3.63808 3.86989 4.18938 4.26396 4.30672 4.35949 4.38930 4.43669 4.52083 4.70250 4.77049 4.84935 4.88990 5.00476 5.03948 5.08085 5.11500 5.12509 5.21308 5.28342 5.39580 5.42089 5.48195 5.57978 5.70589 5.79014 5.87553 5.91766 6.04587 6.07832 6.41700 6.69570 7.24505 7.58298 7.65700 7.96428 8.43561 8.51244 9.19699 10.82423 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002522 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.288780 B =11100.962047 C =12430.180616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.010 4.010 3 H 0.140 0.860 4 C 0.216 3.784 5 N -0.405 5.405 6 C 0.521 3.479 7 O -0.513 6.513 8 N -0.613 5.613 9 C 0.069 3.931 10 C 0.128 3.872 11 C -0.121 4.121 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.626 5.626 16 C 0.545 3.455 17 O -0.517 6.517 18 C -0.116 4.116 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.117 3.883 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.270 0.730 44 H 0.080 0.920 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.316 2.682 -1.439 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.035 4.035 3 H 0.158 0.842 4 C -0.103 4.103 5 N -0.079 5.079 6 C 0.306 3.694 7 O -0.387 6.387 8 N -0.346 5.346 9 C -0.074 4.074 10 C 0.005 3.995 11 C -0.142 4.142 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.023 4.023 15 N -0.364 5.364 16 C 0.333 3.667 17 O -0.392 6.392 18 C -0.267 4.267 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.006 4.006 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -32.915 1.685 1.783 33.006 hybrid contribution 0.305 0.246 -1.318 1.375 sum -32.610 1.932 0.465 32.670 Atomic orbital electron populations 1.22073 0.89649 1.04570 1.05014 1.18797 0.98776 1.00213 0.85685 0.84240 1.28004 0.94072 0.94188 0.94065 1.81228 1.07122 1.07576 1.12021 1.20043 0.80484 0.84809 0.84020 1.90826 1.36214 1.25665 1.85953 1.47709 1.51695 1.29740 1.05491 1.22107 0.94498 0.86936 1.03860 1.21500 0.94069 0.97840 0.86067 1.22843 0.94473 1.00984 0.95871 0.89436 1.22621 0.94192 1.01465 0.97739 1.21995 0.95905 1.01499 0.82860 1.48484 1.06587 1.72363 1.08928 1.19979 0.82631 0.75674 0.88390 1.90711 1.84922 1.47763 1.15789 1.23246 0.95935 1.05543 1.01954 1.84822 0.98404 1.92945 1.15523 1.22310 0.92896 1.55880 0.95641 0.89399 1.24708 0.95208 0.93461 0.97927 1.69941 1.01378 1.47403 1.33034 0.86738 0.80265 0.79939 0.84949 1.19191 1.19945 1.15912 1.22266 0.81540 1.02692 0.94071 0.90196 0.89024 0.91040 0.91543 0.90387 0.90381 0.89390 0.89088 0.90147 0.89703 0.91140 0.91093 0.88633 0.88642 0.91966 0.90232 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.33 8.78 37.15 0.33 0.00 16 2 C -0.01 -0.06 2.30 -94.57 -0.22 -0.27 16 3 H 0.14 0.37 7.40 -51.93 -0.38 -0.01 16 4 C 0.22 2.29 13.88 -20.76 -0.29 2.01 16 5 N -0.40 -5.75 18.54 42.15 0.78 -4.97 16 6 C 0.52 4.21 6.48 -10.99 -0.07 4.14 16 7 O -0.51 -6.73 13.46 5.55 0.07 -6.66 16 8 N -0.61 -2.99 2.83 -181.57 -0.51 -3.50 16 9 C 0.07 0.05 8.80 59.85 0.53 0.58 16 10 C 0.13 0.66 5.02 -4.03 -0.02 0.64 16 11 C -0.12 -0.88 3.29 -88.47 -0.29 -1.17 16 12 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 13 C -0.12 -0.80 6.42 -24.90 -0.16 -0.96 16 14 C 0.10 1.05 6.48 -3.07 -0.02 1.03 16 15 N -0.63 -9.32 3.33 -170.53 -0.57 -9.89 16 16 C 0.55 10.81 7.87 -10.99 -0.09 10.73 16 17 O -0.52 -12.38 16.12 5.56 0.09 -12.29 16 18 C -0.12 -2.40 5.35 36.00 0.19 -2.21 16 19 S -0.14 -3.79 18.54 -107.50 -1.99 -5.79 16 20 C -0.52 -15.30 10.04 30.94 0.31 -14.99 16 21 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 22 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -26.94 13.97 55.49 0.78 -26.17 16 24 Si 0.86 22.34 27.74 -169.99 -4.72 17.63 16 25 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.24 -6.15 6.73 56.52 0.38 -5.77 16 28 C 0.12 1.50 5.00 -2.53 -0.01 1.49 16 29 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 -0.04 4.53 -51.93 -0.24 -0.27 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 -0.06 6.95 -51.93 -0.36 -0.42 16 33 H 0.08 -0.04 6.01 -51.93 -0.31 -0.35 16 34 H 0.08 0.01 8.07 -51.93 -0.42 -0.41 16 35 H 0.09 0.20 8.07 -51.93 -0.42 -0.22 16 36 H 0.09 0.64 7.38 -51.93 -0.38 0.25 16 37 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 42 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 43 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.08 1.17 6.57 -51.93 -0.34 0.83 16 45 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -41.33 383.20 -6.85 -48.18 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -6.65 Total: -6.07 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 0.09 Total: 3.75 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.48 Total: -44.53 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.72 Total: 17.63 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -1.99 Total: -5.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.33 -6.85 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.313 kcal (2) G-P(sol) polarization free energy of solvation -41.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds