Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47041 * 2 1 4 4 C 1.47196 * 109.47258 * 120.00116 * 2 1 3 5 5 N 2.60798 * 109.47165 * 120.00158 * 2 1 3 6 6 C 1.50699 * 109.47028 * 240.00352 * 2 1 3 7 7 O 1.21290 * 120.00058 * 239.99719 * 6 2 1 8 8 N 1.34773 * 120.00294 * 59.99971 * 6 2 1 9 9 C 1.46498 * 119.99981 * 359.97438 * 8 6 2 10 10 C 1.46509 * 120.00094 * 180.02562 * 8 6 2 11 11 C 1.53006 * 109.46532 * 269.99687 * 10 8 6 12 12 H 1.09001 * 110.88610 * 302.57174 * 11 10 8 13 13 C 1.55162 * 111.00010 * 178.65019 * 11 10 8 14 14 C 1.54317 * 102.86152 * 206.22922 * 13 11 10 15 15 N 1.47021 * 107.27565 * 22.52884 * 14 13 11 16 16 C 1.34778 * 125.64597 * 180.97116 * 15 14 13 17 17 O 1.21278 * 119.99748 * 179.68858 * 16 15 14 18 18 C 1.50697 * 120.00209 * 359.68671 * 16 15 14 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31630 * 119.99849 * 180.27695 * 22 20 19 24 24 Si 1.86800 * 120.00065 * 0.28024 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99557 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00077 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99899 * 24 22 20 28 28 C 1.47426 * 108.70439 * 0.70052 * 15 14 13 29 29 H 1.09001 * 109.47182 * 299.99766 * 1 2 3 30 30 H 1.09004 * 109.47523 * 60.00007 * 1 2 3 31 31 H 1.09006 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47232 * 269.99744 * 9 8 6 33 33 H 1.09000 * 109.46819 * 30.00371 * 9 8 6 34 34 H 1.08998 * 109.47197 * 150.00091 * 9 8 6 35 35 H 1.08991 * 109.47264 * 150.00120 * 10 8 6 36 36 H 1.08996 * 109.46885 * 29.99499 * 10 8 6 37 37 H 1.08997 * 110.71728 * 324.78721 * 13 11 10 38 38 H 1.08997 * 110.71938 * 87.88129 * 13 11 10 39 39 H 1.08996 * 109.98636 * 263.04685 * 14 13 11 40 40 H 1.09000 * 109.76998 * 141.88598 * 14 13 11 41 41 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 42 42 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 43 43 H 0.97005 * 119.99878 * 180.02562 * 23 22 20 44 44 H 1.08997 * 110.36576 * 94.93815 * 28 15 14 45 45 H 1.08997 * 110.36974 * 217.15308 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0322 -0.7103 -1.2305 7 8 2.7296 -1.6965 -1.1193 8 7 1.7066 -0.2499 -2.4546 9 6 0.8640 0.9409 -2.5890 10 6 2.1945 -0.9408 -3.6508 11 6 3.5425 -0.3488 -4.0674 12 1 3.4575 0.7230 -4.2467 13 6 4.1091 -1.0788 -5.3139 14 6 5.6315 -0.8706 -5.1714 15 7 5.9045 -0.6019 -3.7520 16 6 7.1163 -0.3476 -3.2197 17 8 7.2235 -0.1335 -2.0308 18 6 8.3380 -0.3295 -4.1017 19 16 9.8002 0.0368 -3.0997 20 6 11.0440 -0.0041 -4.3471 21 1 10.7743 -0.2123 -5.3719 22 6 12.3695 0.2374 -4.0136 23 7 13.2979 0.2123 -4.9463 24 14 12.8359 0.5982 -2.2410 25 1 13.1513 -0.6743 -1.5434 26 1 14.0257 1.4862 -2.2132 27 1 11.7011 1.2693 -1.5574 28 6 4.6323 -0.6500 -3.0085 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.1839 0.6426 -2.6226 33 1 1.0271 1.5996 -1.7360 34 1 1.1217 1.4665 -3.5084 35 1 1.4766 -0.8152 -4.4612 36 1 2.3153 -2.0020 -3.4335 37 1 3.8569 -2.1389 -5.2876 38 1 3.7406 -0.6188 -6.2308 39 1 5.9498 -0.0223 -5.7773 40 1 6.1578 -1.7718 -5.4860 41 1 8.2214 0.4363 -4.8684 42 1 8.4579 -1.3035 -4.5763 43 1 14.2243 0.3807 -4.7132 44 1 4.4810 -1.6405 -2.5796 45 1 4.6219 0.1076 -2.2250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296836109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -62.493461 kcal Electronic energy + Delta-G solvation = -26913.530267 eV Core-core repulsion = 23056.663433 eV Total energy + Delta-G solvation = -3856.866834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61656 -40.86544 -38.73316 -37.71467 -36.71449 -34.71354 -34.64454 -33.10213 -30.96849 -30.22411 -27.97123 -27.82317 -27.07764 -25.63780 -24.11994 -21.86715 -20.91956 -20.68118 -19.64427 -18.66054 -18.37401 -18.16588 -17.44098 -17.16199 -16.97602 -16.56998 -16.24378 -15.74582 -15.60650 -15.29083 -15.07198 -14.93437 -14.69861 -14.33359 -14.17893 -13.95419 -13.89754 -13.80042 -13.60922 -13.53743 -13.38123 -13.18713 -13.09747 -13.05614 -12.70899 -12.67494 -12.48459 -12.28607 -12.16615 -11.96987 -11.89063 -11.60180 -11.20956 -11.08209 -10.82711 -10.58230 -9.75377 -9.62837 -9.06095 -8.55024 -6.26663 0.91781 1.27855 1.39426 1.41786 1.44510 1.48211 1.50325 1.69354 2.04011 2.16529 2.21866 2.64723 2.77531 2.82948 3.35081 3.52580 3.61500 3.78867 3.87562 3.93446 4.09545 4.11177 4.30595 4.33328 4.38201 4.43533 4.49199 4.56491 4.71049 4.75036 4.80358 4.85276 4.88134 4.95246 5.01521 5.10490 5.12585 5.28488 5.32979 5.39515 5.57748 5.67808 6.07710 6.26294 6.33732 6.48471 6.90143 7.00934 7.07818 8.57266 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.002522 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.288780 B =11100.962047 C =12430.180616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 H 0.176 0.824 4 C 0.238 3.762 5 N -0.483 5.483 6 C 0.513 3.487 7 O -0.578 6.578 8 N -0.603 5.603 9 C 0.053 3.947 10 C 0.128 3.872 11 C -0.104 4.104 12 H 0.106 0.894 13 C -0.108 4.108 14 C 0.084 3.916 15 N -0.618 5.618 16 C 0.541 3.459 17 O -0.571 6.571 18 C -0.098 4.098 19 S -0.182 6.182 20 C -0.526 4.526 21 H 0.065 0.935 22 C 0.048 3.952 23 N -0.914 5.914 24 Si 0.912 3.088 25 H -0.265 1.265 26 H -0.254 1.254 27 H -0.240 1.240 28 C 0.114 3.886 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.278 0.722 44 H 0.055 0.945 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.835 4.450 -3.521 38.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.192 0.808 4 C -0.080 4.080 5 N -0.159 5.159 6 C 0.299 3.701 7 O -0.457 6.457 8 N -0.334 5.334 9 C -0.087 4.087 10 C 0.006 3.994 11 C -0.124 4.124 12 H 0.124 0.876 13 C -0.146 4.146 14 C -0.038 4.038 15 N -0.353 5.353 16 C 0.328 3.672 17 O -0.451 6.451 18 C -0.248 4.248 19 S 0.045 5.955 20 C -0.674 4.674 21 H 0.083 0.917 22 C -0.157 4.157 23 N -0.551 5.551 24 Si 0.734 3.266 25 H -0.190 1.190 26 H -0.178 1.178 27 H -0.164 1.164 28 C -0.008 4.008 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.152 0.848 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -36.508 3.481 -0.378 36.676 hybrid contribution 1.248 -0.324 -0.832 1.534 sum -35.261 3.157 -1.210 35.422 Atomic orbital electron populations 1.22151 0.86437 1.04511 1.07411 1.19245 1.01098 1.00682 0.82357 0.80758 1.29086 0.92110 0.92665 0.94136 1.81220 1.09758 1.10077 1.14817 1.20496 0.79776 0.84202 0.85604 1.90812 1.39310 1.28640 1.86962 1.47822 1.50963 1.30401 1.04239 1.22539 0.95127 0.85513 1.05544 1.21581 0.93981 0.96554 0.87326 1.22844 0.93389 1.02368 0.93830 0.87592 1.22665 0.90747 1.02387 0.98836 1.22456 0.99270 1.02133 0.79925 1.48537 1.05673 1.69678 1.11370 1.19795 0.83879 0.75982 0.87499 1.90684 1.85897 1.50787 1.17701 1.23173 0.93621 1.06707 1.01339 1.84814 1.00732 1.93344 1.16654 1.22403 0.94072 1.55581 0.95319 0.91694 1.25508 0.95259 0.93335 1.01634 1.70003 1.02035 1.48233 1.34866 0.85910 0.80327 0.80086 0.80307 1.18963 1.17848 1.16401 1.22390 0.82430 1.00598 0.95364 0.88867 0.85528 0.92358 0.88876 0.88827 0.88710 0.84769 0.91336 0.89415 0.85727 0.89773 0.90995 0.86712 0.87418 0.91261 0.92707 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.17 8.78 71.98 0.63 0.46 16 2 C -0.01 -0.09 2.30 -13.35 -0.03 -0.12 16 3 H 0.18 0.42 7.40 -2.39 -0.02 0.40 16 4 C 0.24 5.26 13.88 89.44 1.24 6.50 16 5 N -0.48 -14.78 18.54 20.00 0.37 -14.41 16 6 C 0.51 7.81 6.48 87.66 0.57 8.38 16 7 O -0.58 -16.02 13.46 -3.06 -0.04 -16.06 16 8 N -0.60 -3.97 2.83 -846.75 -2.39 -6.36 16 9 C 0.05 -0.20 8.80 127.77 1.12 0.92 16 10 C 0.13 0.88 5.02 86.38 0.43 1.32 16 11 C -0.10 -1.17 3.29 -9.40 -0.03 -1.20 16 12 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 13 C -0.11 -0.97 6.42 31.78 0.20 -0.77 16 14 C 0.08 1.53 6.48 86.73 0.56 2.10 16 15 N -0.62 -18.09 3.33 -811.83 -2.70 -20.79 16 16 C 0.54 21.75 7.87 87.66 0.69 22.44 16 17 O -0.57 -28.41 16.12 -3.02 -0.05 -28.46 16 18 C -0.10 -4.04 5.35 71.23 0.38 -3.66 16 19 S -0.18 -9.79 18.54 -56.49 -1.05 -10.83 16 20 C -0.53 -31.51 10.04 67.96 0.68 -30.83 16 21 H 0.06 4.06 8.03 -2.91 -0.02 4.03 16 22 C 0.05 2.90 5.50 84.86 0.47 3.37 16 23 N -0.91 -56.34 13.97 21.65 0.30 -56.03 16 24 Si 0.91 46.51 27.74 68.60 1.90 48.41 16 25 H -0.26 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.25 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.24 -12.36 6.73 99.48 0.67 -11.69 16 28 C 0.11 2.92 5.00 86.85 0.43 3.35 16 29 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.13 -0.74 4.53 -2.38 -0.01 -0.76 16 31 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.09 -0.75 6.95 -2.39 -0.02 -0.77 16 33 H 0.09 -0.60 6.01 -2.39 -0.01 -0.61 16 34 H 0.09 -0.56 8.07 -2.39 -0.02 -0.58 16 35 H 0.13 -0.21 8.07 -2.39 -0.02 -0.23 16 36 H 0.07 0.85 7.38 -2.39 -0.02 0.84 16 37 H 0.09 0.72 8.04 -2.39 -0.02 0.70 16 38 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 42 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 43 H 0.28 15.82 8.31 -92.70 -0.77 15.05 16 44 H 0.05 1.71 6.57 -2.39 -0.02 1.69 16 45 H 0.04 1.29 8.03 -2.39 -0.02 1.27 16 Total: -1.00 -99.14 383.20 4.67 -94.48 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 0.96 Total: -2.20 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 7.36 Total: 12.26 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.42 Total: -97.59 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.09 Total: -44.52 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Atomic # 16 Polarization: -9.79 SS G_CDS: -1.05 Total: -10.83 kcal Total: -99.14 4.67 -94.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.983 kcal (2) G-P(sol) polarization free energy of solvation -99.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds