Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46826 * 2 1 4 4 C 1.47199 * 109.46984 * 239.99459 * 2 1 3 5 5 N 2.60801 * 109.47222 * 239.99579 * 2 1 3 6 6 C 1.50700 * 109.46631 * 119.99656 * 2 1 3 7 7 O 1.21283 * 119.99769 * 114.41908 * 6 2 1 8 8 N 1.34776 * 120.00498 * 294.41539 * 6 2 1 9 9 C 1.46504 * 119.99491 * 355.29115 * 8 6 2 10 10 C 1.46497 * 120.00298 * 175.29443 * 8 6 2 11 11 C 1.53002 * 109.47114 * 90.00151 * 10 8 6 12 12 H 1.08994 * 110.91557 * 51.09829 * 11 10 8 13 13 C 1.55161 * 111.00098 * 175.00077 * 11 10 8 14 14 C 1.54325 * 103.09854 * 153.66599 * 13 11 10 15 15 N 1.47020 * 107.27208 * 337.71224 * 14 13 11 16 16 C 1.34770 * 125.64765 * 178.97421 * 15 14 13 17 17 O 1.21287 * 119.99985 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00311 * 359.97438 * 16 15 14 19 19 S 1.80994 * 109.47606 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00201 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00157 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00291 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99764 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47654 * 89.99795 * 24 22 20 26 26 H 1.48502 * 109.47109 * 210.00006 * 24 22 20 27 27 H 1.48505 * 109.47142 * 329.99684 * 24 22 20 28 28 C 1.47425 * 108.70463 * 358.94842 * 15 14 13 29 29 H 1.09003 * 109.47208 * 289.76818 * 1 2 3 30 30 H 1.09007 * 109.46906 * 49.76853 * 1 2 3 31 31 H 1.08999 * 109.47361 * 169.76629 * 1 2 3 32 32 H 1.08999 * 109.47426 * 264.19514 * 9 8 6 33 33 H 1.09007 * 109.47119 * 24.20208 * 9 8 6 34 34 H 1.09006 * 109.46936 * 144.19766 * 9 8 6 35 35 H 1.08995 * 109.47051 * 329.99743 * 10 8 6 36 36 H 1.09001 * 109.46898 * 210.00124 * 10 8 6 37 37 H 1.08992 * 110.72261 * 35.21129 * 13 11 10 38 38 H 1.09004 * 110.71763 * 272.11581 * 13 11 10 39 39 H 1.08997 * 109.88196 * 97.13784 * 14 13 11 40 40 H 1.08999 * 109.87560 * 218.29658 * 14 13 11 41 41 H 1.08998 * 109.46789 * 299.99917 * 18 16 15 42 42 H 1.09010 * 109.47019 * 59.99174 * 18 16 15 43 43 H 0.96991 * 120.00089 * 180.02562 * 23 22 20 44 44 H 1.08994 * 110.37092 * 142.96554 * 28 15 14 45 45 H 1.09000 * 110.36593 * 265.17900 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0322 -0.7104 1.2305 7 8 2.6437 -1.7521 1.1222 8 7 1.8020 -0.1880 2.4514 9 6 1.1549 1.1203 2.5782 10 6 2.1988 -0.9284 3.6517 11 6 3.6284 -0.5442 4.0385 12 1 3.7392 0.5387 4.0924 13 6 4.0412 -1.2128 5.3764 14 6 5.5773 -1.3058 5.2616 15 7 5.9120 -1.2556 3.8308 16 6 7.1559 -1.2899 3.3135 17 8 7.3145 -1.2425 2.1120 18 6 8.3499 -1.3872 4.2278 19 16 9.8661 -1.4135 3.2397 20 6 11.0666 -1.5287 4.5242 21 1 10.7513 -1.5605 5.5566 22 6 12.4176 -1.5774 4.2093 23 7 13.3144 -1.6629 5.1689 24 14 12.9629 -1.5201 2.4236 25 1 13.1729 -0.1080 2.0151 26 1 14.2330 -2.2741 2.2695 27 1 11.9164 -2.1330 1.5665 28 6 4.6614 -1.1621 3.0558 29 1 -0.3634 0.3476 0.9671 30 1 -0.3633 0.6638 -0.7846 31 1 -0.3634 -1.0113 -0.1826 32 1 1.9157 1.8926 2.6912 33 1 0.5631 1.3210 1.6850 34 1 0.5042 1.1206 3.4528 35 1 2.1519 -1.9985 3.4505 36 1 1.5224 -0.6826 4.4703 37 1 3.6002 -2.2057 5.4635 38 1 3.7548 -0.5895 6.2235 39 1 6.0393 -0.4658 5.7802 40 1 5.9248 -2.2455 5.6908 41 1 8.3665 -0.5266 4.8965 42 1 8.2837 -2.3029 4.8157 43 1 14.2585 -1.6966 4.9489 44 1 4.7982 -0.5120 2.1917 45 1 4.3378 -2.1529 2.7368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296836110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -30.042313 kcal Electronic energy + Delta-G solvation = -26840.783377 eV Core-core repulsion = 22985.323730 eV Total energy + Delta-G solvation = -3855.459647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96109 -39.67901 -37.60769 -36.82608 -36.08582 -34.02960 -32.41428 -32.18298 -29.66561 -29.32645 -27.50663 -26.43766 -25.58960 -25.19029 -23.17958 -21.18612 -20.28532 -19.36327 -18.09733 -17.80937 -17.70080 -16.70144 -16.57175 -16.24740 -15.57770 -15.17631 -14.99476 -14.89672 -14.56853 -14.38480 -13.97482 -13.72775 -13.64647 -13.43726 -13.28049 -13.13975 -13.05916 -12.86284 -12.72626 -12.66393 -12.44262 -12.21297 -12.01041 -11.95509 -11.84274 -11.70285 -11.22868 -11.16067 -10.99780 -10.97113 -10.56302 -10.22925 -9.82483 -9.46437 -9.21914 -8.97306 -8.47802 -8.45201 -6.88344 -6.26261 -3.97463 1.99188 2.04741 2.47928 2.71512 2.75687 3.03392 3.26358 3.35140 3.36159 3.54851 3.64785 3.85870 4.18243 4.23112 4.32054 4.36589 4.38938 4.43598 4.49552 4.72142 4.78786 4.84237 4.88195 4.99567 5.02849 5.07205 5.12087 5.12921 5.22143 5.30285 5.39847 5.42324 5.48902 5.58538 5.72014 5.81544 5.89382 5.94255 6.05268 6.08991 6.43719 6.69952 7.23128 7.58187 7.67446 7.96955 8.44039 8.52978 9.20226 10.82927 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002478 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.732182 B =11294.455963 C =12650.021808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.011 4.011 3 H 0.138 0.862 4 C 0.215 3.785 5 N -0.403 5.403 6 C 0.520 3.480 7 O -0.510 6.510 8 N -0.613 5.613 9 C 0.058 3.942 10 C 0.129 3.871 11 C -0.121 4.121 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.627 5.627 16 C 0.545 3.455 17 O -0.517 6.517 18 C -0.116 4.116 19 S -0.143 6.143 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.121 3.879 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.069 0.931 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.305 8.179 0.721 35.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.035 4.035 3 H 0.156 0.844 4 C -0.104 4.104 5 N -0.078 5.078 6 C 0.305 3.695 7 O -0.384 6.384 8 N -0.347 5.347 9 C -0.084 4.084 10 C 0.007 3.993 11 C -0.141 4.141 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.023 4.023 15 N -0.364 5.364 16 C 0.333 3.667 17 O -0.391 6.391 18 C -0.267 4.267 19 S 0.083 5.917 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.001 4.001 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -32.872 6.848 -2.513 33.672 hybrid contribution 0.302 0.358 1.368 1.446 sum -32.570 7.205 -1.145 33.377 Atomic orbital electron populations 1.22021 0.89591 1.04707 1.04639 1.18814 0.98723 1.00231 0.85753 0.84405 1.28000 0.94165 0.94199 0.94067 1.81238 1.07059 1.07497 1.12020 1.20030 0.79862 0.85580 0.83999 1.90841 1.38573 1.23193 1.85812 1.47711 1.60756 1.20657 1.05528 1.22245 0.98185 0.83948 1.04057 1.21504 0.94140 0.97750 0.85950 1.22913 0.94599 1.00977 0.95649 0.89434 1.22624 0.94691 1.01739 0.97018 1.21997 0.95356 1.02265 0.82645 1.48492 1.05446 1.75171 1.07322 1.19979 0.82316 0.75538 0.88885 1.90719 1.84720 1.48347 1.15337 1.23247 0.96232 1.05508 1.01677 1.84827 0.96428 1.97010 1.13434 1.22309 0.92213 1.58370 0.93824 0.89404 1.24707 0.95428 0.93197 0.97969 1.69936 1.01541 1.48032 1.32258 0.86741 0.80100 0.79744 0.85328 1.19215 1.19935 1.15889 1.22294 0.82420 1.01417 0.94018 0.89179 0.89967 0.90831 0.91842 0.89449 0.90503 0.89208 0.89393 0.90208 0.89753 0.91189 0.91099 0.88688 0.88611 0.91969 0.91290 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.29 8.64 37.16 0.32 0.04 16 2 C -0.01 -0.06 2.27 -94.56 -0.21 -0.27 16 3 H 0.14 0.29 7.74 -51.93 -0.40 -0.11 16 4 C 0.22 2.24 13.86 -20.76 -0.29 1.95 16 5 N -0.40 -5.68 18.54 42.15 0.78 -4.90 16 6 C 0.52 4.14 6.65 -10.99 -0.07 4.06 16 7 O -0.51 -6.69 13.53 5.56 0.08 -6.62 16 8 N -0.61 -2.98 2.86 -181.57 -0.52 -3.50 16 9 C 0.06 0.05 9.77 59.85 0.58 0.63 16 10 C 0.13 0.68 5.04 -4.04 -0.02 0.66 16 11 C -0.12 -0.91 3.28 -88.21 -0.29 -1.20 16 12 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.12 -0.81 6.41 -24.89 -0.16 -0.97 16 14 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 15 N -0.63 -9.46 3.33 -170.22 -0.57 -10.03 16 16 C 0.54 10.93 7.87 -10.99 -0.09 10.84 16 17 O -0.52 -12.54 16.12 5.55 0.09 -12.45 16 18 C -0.12 -2.42 5.35 36.01 0.19 -2.23 16 19 S -0.14 -3.82 18.55 -107.50 -1.99 -5.81 16 20 C -0.52 -15.35 10.04 30.94 0.31 -15.04 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 23 N -0.88 -27.00 13.97 55.49 0.78 -26.23 16 24 Si 0.86 22.43 27.74 -169.99 -4.72 17.72 16 25 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.23 -6.21 6.74 56.52 0.38 -5.83 16 28 C 0.12 1.59 4.94 -2.27 -0.01 1.58 16 29 H 0.09 -0.03 5.40 -51.93 -0.28 -0.31 16 30 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 32 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.09 -0.09 4.11 -51.93 -0.21 -0.30 16 34 H 0.08 -0.05 7.98 -51.93 -0.41 -0.46 16 35 H 0.09 0.63 7.33 -51.93 -0.38 0.25 16 36 H 0.09 0.20 7.95 -51.93 -0.41 -0.21 16 37 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 42 H 0.10 1.87 8.14 -51.91 -0.42 1.45 16 43 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 45 H 0.08 1.13 6.95 -51.93 -0.36 0.77 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -41.56 384.77 -6.80 -48.36 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -6.68 Total: -6.20 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 0.15 Total: 3.87 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.47 Total: -44.66 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.16 Total: -19.07 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.72 Total: 17.72 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.99 Total: -5.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -41.56 -6.80 -48.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.317 kcal (2) G-P(sol) polarization free energy of solvation -41.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds