Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46826 * 2 1 4 4 C 1.47199 * 109.46984 * 239.99459 * 2 1 3 5 5 N 2.60801 * 109.47222 * 239.99579 * 2 1 3 6 6 C 1.50700 * 109.46631 * 119.99656 * 2 1 3 7 7 O 1.21283 * 119.99769 * 114.41908 * 6 2 1 8 8 N 1.34776 * 120.00498 * 294.41539 * 6 2 1 9 9 C 1.46504 * 119.99491 * 355.29115 * 8 6 2 10 10 C 1.46497 * 120.00298 * 175.29443 * 8 6 2 11 11 C 1.53002 * 109.47114 * 90.00151 * 10 8 6 12 12 H 1.08994 * 110.91557 * 51.09829 * 11 10 8 13 13 C 1.55161 * 111.00098 * 175.00077 * 11 10 8 14 14 C 1.54325 * 103.09854 * 153.66599 * 13 11 10 15 15 N 1.47020 * 107.27208 * 337.71224 * 14 13 11 16 16 C 1.34770 * 125.64765 * 178.97421 * 15 14 13 17 17 O 1.21287 * 119.99985 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00311 * 359.97438 * 16 15 14 19 19 S 1.80994 * 109.47606 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00201 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99985 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00157 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00291 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99764 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47654 * 89.99795 * 24 22 20 26 26 H 1.48502 * 109.47109 * 210.00006 * 24 22 20 27 27 H 1.48505 * 109.47142 * 329.99684 * 24 22 20 28 28 C 1.47425 * 108.70463 * 358.94842 * 15 14 13 29 29 H 1.09003 * 109.47208 * 289.76818 * 1 2 3 30 30 H 1.09007 * 109.46906 * 49.76853 * 1 2 3 31 31 H 1.08999 * 109.47361 * 169.76629 * 1 2 3 32 32 H 1.08999 * 109.47426 * 264.19514 * 9 8 6 33 33 H 1.09007 * 109.47119 * 24.20208 * 9 8 6 34 34 H 1.09006 * 109.46936 * 144.19766 * 9 8 6 35 35 H 1.08995 * 109.47051 * 329.99743 * 10 8 6 36 36 H 1.09001 * 109.46898 * 210.00124 * 10 8 6 37 37 H 1.08992 * 110.72261 * 35.21129 * 13 11 10 38 38 H 1.09004 * 110.71763 * 272.11581 * 13 11 10 39 39 H 1.08997 * 109.88196 * 97.13784 * 14 13 11 40 40 H 1.08999 * 109.87560 * 218.29658 * 14 13 11 41 41 H 1.08998 * 109.46789 * 299.99917 * 18 16 15 42 42 H 1.09010 * 109.47019 * 59.99174 * 18 16 15 43 43 H 0.96991 * 120.00089 * 180.02562 * 23 22 20 44 44 H 1.08994 * 110.37092 * 142.96554 * 28 15 14 45 45 H 1.09000 * 110.36593 * 265.17900 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0322 -0.7104 1.2305 7 8 2.6437 -1.7521 1.1222 8 7 1.8020 -0.1880 2.4514 9 6 1.1549 1.1203 2.5782 10 6 2.1988 -0.9284 3.6517 11 6 3.6284 -0.5442 4.0385 12 1 3.7392 0.5387 4.0924 13 6 4.0412 -1.2128 5.3764 14 6 5.5773 -1.3058 5.2616 15 7 5.9120 -1.2556 3.8308 16 6 7.1559 -1.2899 3.3135 17 8 7.3145 -1.2425 2.1120 18 6 8.3499 -1.3872 4.2278 19 16 9.8661 -1.4135 3.2397 20 6 11.0666 -1.5287 4.5242 21 1 10.7513 -1.5605 5.5566 22 6 12.4176 -1.5774 4.2093 23 7 13.3144 -1.6629 5.1689 24 14 12.9629 -1.5201 2.4236 25 1 13.1729 -0.1080 2.0151 26 1 14.2330 -2.2741 2.2695 27 1 11.9164 -2.1330 1.5665 28 6 4.6614 -1.1621 3.0558 29 1 -0.3634 0.3476 0.9671 30 1 -0.3633 0.6638 -0.7846 31 1 -0.3634 -1.0113 -0.1826 32 1 1.9157 1.8926 2.6912 33 1 0.5631 1.3210 1.6850 34 1 0.5042 1.1206 3.4528 35 1 2.1519 -1.9985 3.4505 36 1 1.5224 -0.6826 4.4703 37 1 3.6002 -2.2057 5.4635 38 1 3.7548 -0.5895 6.2235 39 1 6.0393 -0.4658 5.7802 40 1 5.9248 -2.2455 5.6908 41 1 8.3665 -0.5266 4.8965 42 1 8.2837 -2.3029 4.8157 43 1 14.2585 -1.6966 4.9489 44 1 4.7982 -0.5120 2.1917 45 1 4.3378 -2.1529 2.7368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001296836110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -60.950610 kcal Electronic energy + Delta-G solvation = -26842.123662 eV Core-core repulsion = 22985.323730 eV Total energy + Delta-G solvation = -3856.799931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58653 -40.87644 -38.72866 -37.72109 -36.69631 -34.71790 -34.65763 -33.12951 -30.97041 -30.23134 -27.96165 -27.77053 -27.07805 -25.68942 -24.12498 -21.86275 -20.93405 -20.71196 -19.64406 -18.63968 -18.36099 -18.16473 -17.44227 -17.17000 -16.91867 -16.54337 -16.31945 -15.76666 -15.60533 -15.31349 -15.05523 -14.93850 -14.71115 -14.32939 -14.22053 -13.96553 -13.89848 -13.78417 -13.58949 -13.55567 -13.38181 -13.21594 -13.13222 -13.05142 -12.71556 -12.69323 -12.48859 -12.32138 -12.12274 -11.93488 -11.88229 -11.60265 -11.20973 -11.08754 -10.80788 -10.58576 -9.75378 -9.65739 -9.06675 -8.55383 -6.27057 0.91335 1.26815 1.38656 1.41661 1.44574 1.48111 1.49693 1.69731 2.03435 2.17449 2.21588 2.64447 2.76647 2.82513 3.33709 3.52867 3.62126 3.76947 3.87842 3.91550 4.10476 4.11381 4.30134 4.32690 4.38840 4.40333 4.46776 4.57439 4.70266 4.76000 4.79573 4.84175 4.90067 4.91077 5.00633 5.10093 5.11947 5.28042 5.35575 5.40102 5.58650 5.67558 6.07382 6.26691 6.33596 6.48603 6.89831 7.00510 7.08028 8.56911 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002478 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.732182 B =11294.455963 C =12650.021808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.009 4.009 3 H 0.178 0.822 4 C 0.238 3.762 5 N -0.483 5.483 6 C 0.512 3.488 7 O -0.577 6.577 8 N -0.603 5.603 9 C 0.047 3.953 10 C 0.129 3.871 11 C -0.104 4.104 12 H 0.101 0.899 13 C -0.108 4.108 14 C 0.083 3.917 15 N -0.619 5.619 16 C 0.540 3.460 17 O -0.573 6.573 18 C -0.097 4.097 19 S -0.183 6.183 20 C -0.526 4.526 21 H 0.065 0.935 22 C 0.049 3.951 23 N -0.913 5.913 24 Si 0.911 3.089 25 H -0.261 1.261 26 H -0.256 1.256 27 H -0.243 1.243 28 C 0.119 3.881 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.278 0.722 44 H 0.037 0.963 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.720 10.417 2.828 39.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.195 0.805 4 C -0.080 4.080 5 N -0.159 5.159 6 C 0.298 3.702 7 O -0.456 6.456 8 N -0.335 5.335 9 C -0.093 4.093 10 C 0.006 3.994 11 C -0.124 4.124 12 H 0.120 0.880 13 C -0.146 4.146 14 C -0.038 4.038 15 N -0.353 5.353 16 C 0.328 3.672 17 O -0.452 6.452 18 C -0.248 4.248 19 S 0.043 5.957 20 C -0.673 4.673 21 H 0.084 0.916 22 C -0.157 4.157 23 N -0.551 5.551 24 Si 0.733 3.267 25 H -0.185 1.185 26 H -0.180 1.180 27 H -0.168 1.168 28 C -0.003 4.003 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -36.357 9.128 -0.326 37.487 hybrid contribution 1.210 -0.307 0.871 1.522 sum -35.147 8.821 0.545 36.241 Atomic orbital electron populations 1.22103 0.86434 1.04472 1.07248 1.19271 1.00992 1.00840 0.82248 0.80546 1.29083 0.92157 0.92637 0.94122 1.81232 1.09756 1.10040 1.14887 1.20527 0.79107 0.84945 0.85609 1.90828 1.41720 1.26194 1.86846 1.47832 1.59545 1.21780 1.04313 1.22620 0.98757 0.81453 1.06480 1.21600 0.93524 0.96900 0.87342 1.22910 0.94056 1.01329 0.94118 0.88030 1.22670 0.91142 1.03232 0.97536 1.22474 0.98839 1.03030 0.79481 1.48550 1.04393 1.72368 1.10000 1.19822 0.83728 0.75746 0.87931 1.90692 1.85764 1.51447 1.17300 1.23169 0.93530 1.07045 1.01017 1.84838 0.99178 1.97174 1.14502 1.22395 0.93277 1.58130 0.93531 0.91642 1.25499 0.95590 0.92908 1.01703 1.69996 1.02205 1.48803 1.34086 0.85914 0.79996 0.80164 0.80587 1.18513 1.17991 1.16765 1.22407 0.83055 1.00153 0.94693 0.85998 0.87891 0.92537 0.91357 0.87365 0.87755 0.91325 0.84602 0.89122 0.85760 0.89912 0.90794 0.86768 0.87248 0.91250 0.94480 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.10 8.64 71.98 0.62 0.52 16 2 C -0.01 -0.08 2.27 -13.35 -0.03 -0.11 16 3 H 0.18 0.17 7.74 -2.39 -0.02 0.15 16 4 C 0.24 5.15 13.86 89.44 1.24 6.39 16 5 N -0.48 -14.69 18.54 20.01 0.37 -14.32 16 6 C 0.51 7.67 6.65 87.66 0.58 8.25 16 7 O -0.58 -16.02 13.53 -3.04 -0.04 -16.07 16 8 N -0.60 -3.95 2.86 -846.74 -2.42 -6.37 16 9 C 0.05 -0.17 9.77 127.77 1.25 1.08 16 10 C 0.13 0.90 5.04 86.38 0.44 1.34 16 11 C -0.10 -1.24 3.28 -9.23 -0.03 -1.27 16 12 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 13 C -0.11 -0.96 6.41 31.78 0.20 -0.76 16 14 C 0.08 1.54 6.49 86.73 0.56 2.10 16 15 N -0.62 -18.48 3.33 -810.85 -2.70 -21.17 16 16 C 0.54 22.10 7.87 87.66 0.69 22.79 16 17 O -0.57 -29.08 16.12 -3.05 -0.05 -29.13 16 18 C -0.10 -4.05 5.35 71.24 0.38 -3.66 16 19 S -0.18 -9.95 18.55 -56.49 -1.05 -10.99 16 20 C -0.53 -31.60 10.04 67.96 0.68 -30.92 16 21 H 0.07 4.10 8.03 -2.91 -0.02 4.08 16 22 C 0.05 2.94 5.50 84.86 0.47 3.41 16 23 N -0.91 -56.41 13.97 21.65 0.30 -56.11 16 24 Si 0.91 46.75 27.74 68.60 1.90 48.65 16 25 H -0.26 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.24 -12.75 6.74 99.48 0.67 -12.08 16 28 C 0.12 3.16 4.94 87.02 0.43 3.59 16 29 H 0.12 -0.68 5.40 -2.39 -0.01 -0.69 16 30 H 0.10 -0.28 8.14 -2.38 -0.02 -0.30 16 31 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 32 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.11 -0.84 4.11 -2.38 -0.01 -0.85 16 34 H 0.10 -0.84 7.98 -2.38 -0.02 -0.86 16 35 H 0.07 0.84 7.33 -2.39 -0.02 0.83 16 36 H 0.14 -0.24 7.95 -2.39 -0.02 -0.26 16 37 H 0.09 0.68 8.04 -2.39 -0.02 0.66 16 38 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 4.31 8.14 -2.40 -0.02 4.29 16 42 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 43 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.04 1.21 8.04 -2.39 -0.02 1.19 16 45 H 0.05 1.69 6.95 -2.39 -0.02 1.68 16 Total: -1.00 -100.23 384.77 4.76 -95.46 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: 0.96 Total: -2.69 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 7.48 Total: 12.74 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.45 Total: -97.97 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.09 Total: -45.20 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -1.05 Total: -10.99 kcal Total: -100.23 4.76 -95.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296836110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.514 kcal (2) G-P(sol) polarization free energy of solvation -100.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds