Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46938 * 2 1 4 4 C 1.47199 * 109.47277 * 119.99500 * 2 1 3 5 5 N 2.60806 * 109.47076 * 119.99632 * 2 1 3 6 6 C 1.50696 * 109.47413 * 239.99705 * 2 1 3 7 7 O 1.21285 * 119.99789 * 239.99747 * 6 2 1 8 8 N 1.34774 * 120.00087 * 59.99921 * 6 2 1 9 9 C 1.46502 * 120.00210 * 184.99189 * 8 6 2 10 10 C 1.53005 * 109.46806 * 295.79476 * 9 8 6 11 11 C 1.53001 * 109.47183 * 55.79375 * 9 8 6 12 12 N 1.46495 * 109.46810 * 60.00098 * 11 9 8 13 13 C 1.34781 * 119.99974 * 179.97438 * 12 11 9 14 14 O 1.21282 * 119.99568 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00111 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.46905 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99731 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00323 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99737 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00140 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46919 * 120.00335 * 21 19 17 24 24 H 1.48501 * 109.46825 * 239.99823 * 21 19 17 25 25 C 1.52999 * 109.47114 * 175.79782 * 9 8 6 26 26 C 1.52997 * 117.49776 * 132.72664 * 25 9 8 27 27 C 1.53001 * 117.49923 * 64.10359 * 25 9 8 28 28 H 1.09001 * 109.47419 * 300.00327 * 1 2 3 29 29 H 1.09004 * 109.46928 * 60.00391 * 1 2 3 30 30 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00115 * 4.99089 * 8 6 2 32 32 H 1.08995 * 109.47410 * 60.00105 * 10 9 8 33 33 H 1.08995 * 109.46684 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.46912 * 300.00137 * 10 9 8 35 35 H 1.08998 * 109.46841 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46793 * 300.00306 * 11 9 8 37 37 H 0.97001 * 120.00621 * 359.97438 * 12 11 9 38 38 H 1.08998 * 109.47515 * 300.00046 * 15 13 12 39 39 H 1.09000 * 109.47175 * 60.00734 * 15 13 12 40 40 H 0.97001 * 119.99510 * 180.02562 * 20 19 17 41 41 H 1.09002 * 115.54969 * 278.43359 * 25 9 8 42 42 H 1.08996 * 117.50167 * 359.97438 * 26 25 9 43 43 H 1.09001 * 117.49877 * 145.02013 * 26 25 9 44 44 H 1.09002 * 117.49277 * 214.97739 * 27 25 9 45 45 H 1.08994 * 117.49893 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3993 -1.2293 2.1296 6 6 2.0323 -0.7104 -1.2304 7 8 2.7297 -1.6965 -1.1190 8 7 1.7068 -0.2501 -2.4545 9 6 2.1025 -1.0009 -3.6486 10 6 3.6290 -1.0323 -3.7486 11 6 1.5682 -2.4313 -3.5520 12 7 0.1067 -2.4011 -3.4563 13 6 -0.5864 -3.5532 -3.3615 14 8 0.0000 -4.6148 -3.3552 15 6 -2.0898 -3.5222 -3.2624 16 16 -2.7219 -5.2144 -3.1483 17 6 -4.4507 -4.8890 -3.0474 18 1 -4.8106 -3.8709 -3.0674 19 6 -5.3499 -5.9412 -2.9434 20 7 -4.9113 -7.1820 -2.9196 21 14 -7.1828 -5.5962 -2.8372 22 1 -7.4141 -4.1302 -2.8848 23 1 -7.8753 -6.2436 -3.9802 24 1 -7.7158 -6.1409 -1.5626 25 6 1.5238 -0.3231 -4.8923 26 6 2.4659 -0.0968 -6.0763 27 6 2.0146 1.0884 -5.2204 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2105 0.5784 -2.5449 32 1 4.0413 -1.5151 -2.8627 33 1 3.9234 -1.5905 -4.6373 34 1 4.0096 -0.0133 -3.8174 35 1 1.8630 -2.9900 -4.4403 36 1 1.9805 -2.9141 -2.6660 37 1 -0.3623 -1.5521 -3.4610 38 1 -2.3839 -2.9641 -2.3735 39 1 -2.5024 -3.0388 -4.1480 40 1 -5.5398 -7.9173 -2.8473 41 1 0.4830 -0.5585 -5.1146 42 1 3.4981 -0.4303 -5.9693 43 1 2.0450 -0.1833 -7.0781 44 1 1.2966 1.7815 -5.6591 45 1 2.7500 1.5340 -4.5506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297574898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -19.937108 kcal Electronic energy + Delta-G solvation = -27348.705941 eV Core-core repulsion = 23493.684488 eV Total energy + Delta-G solvation = -3855.021453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16409 -39.17829 -38.47506 -36.77050 -35.08009 -34.21233 -33.29645 -32.42754 -30.84452 -29.31938 -26.35191 -25.69464 -25.41255 -24.19034 -22.78392 -21.46668 -20.33333 -19.78037 -18.43201 -17.91550 -17.56990 -16.58929 -16.39495 -16.13340 -15.81511 -15.23372 -14.91047 -14.80885 -14.78406 -14.24101 -14.11681 -13.70017 -13.47218 -13.24182 -13.07868 -12.95444 -12.93438 -12.71796 -12.61668 -12.54977 -12.20806 -12.03459 -11.89194 -11.71851 -11.61002 -11.54598 -11.07609 -11.02017 -10.84194 -10.76556 -10.60255 -10.01817 -9.81390 -9.55055 -9.34622 -9.07709 -8.79048 -8.21727 -6.49365 -6.21573 -3.92011 2.07905 2.17979 2.55665 2.84554 3.06100 3.14754 3.21102 3.28206 3.32474 3.39282 3.49162 3.73017 4.04987 4.16662 4.20184 4.35754 4.40510 4.52622 4.54038 4.59918 4.79218 5.01588 5.08722 5.13593 5.15001 5.20625 5.23629 5.37935 5.43476 5.48048 5.52724 5.62810 5.65291 5.69985 5.72954 5.87566 5.97156 5.98994 6.11497 6.14003 6.63323 7.01438 7.31701 7.59313 7.71609 7.77060 8.35016 8.65903 9.23667 10.85864 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.003009 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.740336 B = 9302.899263 C =10608.891575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 H 0.139 0.861 4 C 0.218 3.782 5 N -0.407 5.407 6 C 0.526 3.474 7 O -0.513 6.513 8 N -0.716 5.716 9 C 0.202 3.798 10 C -0.166 4.166 11 C 0.111 3.889 12 N -0.734 5.734 13 C 0.530 3.470 14 O -0.514 6.514 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.167 4.167 26 C -0.167 4.167 27 C -0.175 4.175 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.404 0.596 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.393 0.607 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.903 25.085 -3.443 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 H 0.156 0.844 4 C -0.102 4.102 5 N -0.082 5.082 6 C 0.310 3.690 7 O -0.387 6.387 8 N -0.369 5.369 9 C 0.116 3.884 10 C -0.224 4.224 11 C -0.014 4.014 12 N -0.389 5.389 13 C 0.315 3.685 14 O -0.388 6.388 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.186 4.186 26 C -0.204 4.204 27 C -0.212 4.212 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.239 0.761 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.928 21.549 -1.927 26.866 hybrid contribution -2.550 2.473 -0.426 3.577 sum 13.378 24.021 -2.353 27.596 Atomic orbital electron populations 1.21839 0.89276 1.05004 1.04405 1.18831 0.99000 0.99917 0.85667 0.84396 1.28039 0.93981 0.94120 0.94060 1.81218 1.07633 1.07333 1.12023 1.19973 0.80313 0.84736 0.84018 1.90778 1.36140 1.25510 1.86299 1.45962 1.58936 1.27320 1.04706 1.20040 0.95126 0.90616 0.82597 1.22298 0.93338 1.02638 1.04160 1.21705 0.80733 0.94757 1.04168 1.45885 1.06567 1.08763 1.77676 1.20286 0.89309 0.83420 0.75438 1.90719 1.70888 1.29789 1.47390 1.23509 0.93637 1.08458 1.04617 1.85478 1.03960 0.97848 1.96038 1.22901 0.91402 0.95581 1.58471 0.90924 1.24995 0.99575 0.94437 0.94589 1.70032 1.35085 0.98376 1.46710 0.86127 0.83036 0.78442 0.77932 1.19632 1.20578 1.20573 1.22511 1.00418 0.99548 0.96122 1.23128 1.00180 1.01856 0.95250 1.22993 1.03812 0.90662 1.03713 0.90132 0.89854 0.90493 0.76100 0.89999 0.90896 0.91889 0.90752 0.89014 0.77311 0.89450 0.89386 0.92234 0.86658 0.87726 0.88343 0.88422 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.05 37.15 0.34 -0.34 16 2 C -0.01 -0.06 3.10 -94.56 -0.29 -0.35 16 3 H 0.14 0.21 8.14 -51.92 -0.42 -0.22 16 4 C 0.22 2.37 13.88 -20.76 -0.29 2.08 16 5 N -0.41 -5.86 18.54 42.16 0.78 -5.08 16 6 C 0.53 4.37 6.55 -10.99 -0.07 4.30 16 7 O -0.51 -6.84 12.27 5.55 0.07 -6.77 16 8 N -0.72 -3.83 4.59 -47.60 -0.22 -4.05 16 9 C 0.20 1.45 0.54 -131.81 -0.07 1.38 16 10 C -0.17 -1.21 7.10 37.16 0.26 -0.95 16 11 C 0.11 1.32 4.32 -4.04 -0.02 1.30 16 12 N -0.73 -9.15 4.99 -60.30 -0.30 -9.45 16 13 C 0.53 9.77 7.85 -10.99 -0.09 9.68 16 14 O -0.51 -11.96 15.86 5.56 0.09 -11.88 16 15 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 21 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.17 -0.91 4.87 -90.62 -0.44 -1.36 16 26 C -0.17 -0.85 9.63 -26.73 -0.26 -1.11 16 27 C -0.17 -0.65 9.71 -26.73 -0.26 -0.91 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.15 7.68 -51.93 -0.40 -0.25 16 30 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.40 0.80 7.95 -40.82 -0.32 0.48 16 32 H 0.08 0.81 6.31 -51.93 -0.33 0.49 16 33 H 0.07 0.50 6.78 -51.93 -0.35 0.15 16 34 H 0.06 0.36 6.98 -51.93 -0.36 0.00 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.41 6.04 -51.93 -0.31 1.10 16 37 H 0.39 3.54 7.43 -40.82 -0.30 3.24 16 38 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.12 0.70 7.09 -51.93 -0.37 0.33 16 42 H 0.10 0.52 5.88 -51.93 -0.31 0.22 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.10 0.31 7.34 -51.93 -0.38 -0.07 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -39.64 389.41 -7.35 -46.98 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.36 Total: -0.68 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.77 Total: -1.88 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 1.00 Total: -44.04 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.16 Total: -18.64 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.64 -7.35 -46.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.044 kcal (2) G-P(sol) polarization free energy of solvation -39.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds