Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46938 * 2 1 4 4 C 1.47199 * 109.47277 * 119.99500 * 2 1 3 5 5 N 2.60806 * 109.47076 * 119.99632 * 2 1 3 6 6 C 1.50696 * 109.47413 * 239.99705 * 2 1 3 7 7 O 1.21285 * 119.99789 * 239.99747 * 6 2 1 8 8 N 1.34774 * 120.00087 * 59.99921 * 6 2 1 9 9 C 1.46502 * 120.00210 * 184.99189 * 8 6 2 10 10 C 1.53005 * 109.46806 * 295.79476 * 9 8 6 11 11 C 1.53001 * 109.47183 * 55.79375 * 9 8 6 12 12 N 1.46495 * 109.46810 * 60.00098 * 11 9 8 13 13 C 1.34781 * 119.99974 * 179.97438 * 12 11 9 14 14 O 1.21282 * 119.99568 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00111 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.46905 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99731 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00323 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99737 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00140 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47228 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46919 * 120.00335 * 21 19 17 24 24 H 1.48501 * 109.46825 * 239.99823 * 21 19 17 25 25 C 1.52999 * 109.47114 * 175.79782 * 9 8 6 26 26 C 1.52997 * 117.49776 * 132.72664 * 25 9 8 27 27 C 1.53001 * 117.49923 * 64.10359 * 25 9 8 28 28 H 1.09001 * 109.47419 * 300.00327 * 1 2 3 29 29 H 1.09004 * 109.46928 * 60.00391 * 1 2 3 30 30 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00115 * 4.99089 * 8 6 2 32 32 H 1.08995 * 109.47410 * 60.00105 * 10 9 8 33 33 H 1.08995 * 109.46684 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.46912 * 300.00137 * 10 9 8 35 35 H 1.08998 * 109.46841 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46793 * 300.00306 * 11 9 8 37 37 H 0.97001 * 120.00621 * 359.97438 * 12 11 9 38 38 H 1.08998 * 109.47515 * 300.00046 * 15 13 12 39 39 H 1.09000 * 109.47175 * 60.00734 * 15 13 12 40 40 H 0.97001 * 119.99510 * 180.02562 * 20 19 17 41 41 H 1.09002 * 115.54969 * 278.43359 * 25 9 8 42 42 H 1.08996 * 117.50167 * 359.97438 * 26 25 9 43 43 H 1.09001 * 117.49877 * 145.02013 * 26 25 9 44 44 H 1.09002 * 117.49277 * 214.97739 * 27 25 9 45 45 H 1.08994 * 117.49893 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 1.2019 5 7 2.3993 -1.2293 2.1296 6 6 2.0323 -0.7104 -1.2304 7 8 2.7297 -1.6965 -1.1190 8 7 1.7068 -0.2501 -2.4545 9 6 2.1025 -1.0009 -3.6486 10 6 3.6290 -1.0323 -3.7486 11 6 1.5682 -2.4313 -3.5520 12 7 0.1067 -2.4011 -3.4563 13 6 -0.5864 -3.5532 -3.3615 14 8 0.0000 -4.6148 -3.3552 15 6 -2.0898 -3.5222 -3.2624 16 16 -2.7219 -5.2144 -3.1483 17 6 -4.4507 -4.8890 -3.0474 18 1 -4.8106 -3.8709 -3.0674 19 6 -5.3499 -5.9412 -2.9434 20 7 -4.9113 -7.1820 -2.9196 21 14 -7.1828 -5.5962 -2.8372 22 1 -7.4141 -4.1302 -2.8848 23 1 -7.8753 -6.2436 -3.9802 24 1 -7.7158 -6.1409 -1.5626 25 6 1.5238 -0.3231 -4.8923 26 6 2.4659 -0.0968 -6.0763 27 6 2.0146 1.0884 -5.2204 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2105 0.5784 -2.5449 32 1 4.0413 -1.5151 -2.8627 33 1 3.9234 -1.5905 -4.6373 34 1 4.0096 -0.0133 -3.8174 35 1 1.8630 -2.9900 -4.4403 36 1 1.9805 -2.9141 -2.6660 37 1 -0.3623 -1.5521 -3.4610 38 1 -2.3839 -2.9641 -2.3735 39 1 -2.5024 -3.0388 -4.1480 40 1 -5.5398 -7.9173 -2.8473 41 1 0.4830 -0.5585 -5.1146 42 1 3.4981 -0.4303 -5.9693 43 1 2.0450 -0.1833 -7.0781 44 1 1.2966 1.7815 -5.6591 45 1 2.7500 1.5340 -4.5506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297574898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -50.344640 kcal Electronic energy + Delta-G solvation = -27350.024511 eV Core-core repulsion = 23493.684488 eV Total energy + Delta-G solvation = -3856.340022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88411 -40.41547 -39.27625 -37.62738 -35.93878 -35.07151 -34.57030 -34.11312 -31.75127 -30.58689 -27.75173 -27.08816 -26.19332 -24.91828 -23.10921 -22.08234 -21.75980 -20.48021 -19.82704 -19.03264 -18.21959 -17.88163 -17.44293 -16.96312 -16.86966 -16.61327 -16.30978 -15.96792 -15.64255 -15.53873 -15.00331 -14.76760 -14.55591 -14.26456 -14.18246 -14.08037 -13.89557 -13.71801 -13.37935 -13.26549 -13.14465 -13.12728 -12.90377 -12.76557 -12.67112 -12.52115 -12.40574 -12.14234 -11.99099 -11.69779 -11.23902 -11.14864 -11.04970 -10.97664 -10.72425 -10.24131 -10.18943 -10.02487 -8.66005 -8.33260 -6.11649 1.27997 1.38195 1.42826 1.48779 1.51545 1.59422 1.64368 1.73698 2.16543 2.28263 2.35019 2.80942 3.01343 3.01548 3.34140 3.51117 3.57819 3.80625 3.96239 3.99925 4.06296 4.16510 4.19090 4.29293 4.31994 4.50999 4.53725 4.56303 4.76080 4.81797 4.84468 4.87453 4.92488 5.00368 5.13010 5.24271 5.31048 5.37745 5.41291 5.43465 5.44440 5.50093 6.21430 6.43029 6.52615 6.60545 7.08101 7.22390 7.28521 8.76271 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.003009 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.740336 B = 9302.899263 C =10608.891575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.003 4.003 3 H 0.197 0.803 4 C 0.238 3.762 5 N -0.483 5.483 6 C 0.522 3.478 7 O -0.570 6.570 8 N -0.694 5.694 9 C 0.215 3.785 10 C -0.163 4.163 11 C 0.112 3.888 12 N -0.700 5.700 13 C 0.529 3.471 14 O -0.572 6.572 15 C -0.124 4.124 16 S -0.162 6.162 17 C -0.541 4.541 18 H 0.087 0.913 19 C 0.011 3.989 20 N -0.914 5.914 21 Si 1.000 3.000 22 H -0.252 1.252 23 H -0.275 1.275 24 H -0.277 1.277 25 C -0.174 4.174 26 C -0.180 4.180 27 C -0.147 4.147 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.041 0.959 31 H 0.427 0.573 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.415 0.585 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 30.221 -4.649 32.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.214 0.786 4 C -0.080 4.080 5 N -0.159 5.159 6 C 0.307 3.693 7 O -0.448 6.448 8 N -0.349 5.349 9 C 0.129 3.871 10 C -0.221 4.221 11 C -0.013 4.013 12 N -0.354 5.354 13 C 0.315 3.685 14 O -0.450 6.450 15 C -0.275 4.275 16 S 0.065 5.935 17 C -0.689 4.689 18 H 0.105 0.895 19 C -0.193 4.193 20 N -0.551 5.551 21 Si 0.822 3.178 22 H -0.175 1.175 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.193 4.193 26 C -0.218 4.218 27 C -0.183 4.183 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.131 0.869 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.365 26.806 -3.154 30.575 hybrid contribution -1.943 0.946 -0.113 2.165 sum 12.422 27.752 -3.268 30.580 Atomic orbital electron populations 1.21935 0.87773 1.03560 1.07172 1.19242 0.99827 1.01587 0.81977 0.78620 1.29087 0.92114 0.92643 0.94169 1.81221 1.10175 1.09697 1.14768 1.20454 0.79456 0.84013 0.85333 1.90793 1.38797 1.28111 1.87120 1.45751 1.58200 1.27661 1.03251 1.19786 0.95026 0.88069 0.84242 1.22263 0.93167 1.03840 1.02812 1.21714 0.79635 0.98048 1.01866 1.45510 1.06904 1.08014 1.75000 1.20182 0.89024 0.84060 0.75227 1.90710 1.71658 1.32221 1.50411 1.23329 0.94163 1.03107 1.06902 1.85754 1.05686 1.05573 1.96438 1.23239 0.91194 0.96337 1.58141 0.89506 1.26165 1.05326 0.94013 0.93840 1.70212 1.37085 0.99694 1.48074 0.84888 0.75749 0.79300 0.77898 1.17512 1.20057 1.20240 1.22352 1.00269 1.01540 0.95157 1.23213 1.00032 1.03332 0.95203 1.23089 1.03431 0.89493 1.02336 0.88658 0.85888 0.93965 0.73336 0.92924 0.90830 0.89336 0.92064 0.92618 0.74661 0.87052 0.86715 0.92120 0.86703 0.87847 0.88421 0.86938 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.05 71.98 0.65 -0.17 16 2 C 0.00 -0.02 3.10 -13.35 -0.04 -0.06 16 3 H 0.20 -0.52 8.14 -2.38 -0.02 -0.54 16 4 C 0.24 5.09 13.88 89.44 1.24 6.33 16 5 N -0.48 -14.48 18.54 20.01 0.37 -14.11 16 6 C 0.52 7.73 6.55 87.66 0.57 8.31 16 7 O -0.57 -15.60 12.27 -3.05 -0.04 -15.64 16 8 N -0.69 -5.12 4.59 -422.91 -1.94 -7.07 16 9 C 0.22 2.66 0.54 3.61 0.00 2.66 16 10 C -0.16 -2.18 7.10 71.98 0.51 -1.67 16 11 C 0.11 2.67 4.32 86.38 0.37 3.05 16 12 N -0.70 -16.59 4.99 -463.07 -2.31 -18.90 16 13 C 0.53 19.56 7.85 87.65 0.69 20.25 16 14 O -0.57 -27.89 15.86 -3.04 -0.05 -27.94 16 15 C -0.12 -4.74 6.16 71.23 0.44 -4.30 16 16 S -0.16 -9.02 20.57 -56.49 -1.16 -10.18 16 17 C -0.54 -30.53 9.50 67.95 0.65 -29.88 16 18 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.62 5.49 84.86 0.47 1.09 16 20 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 21 Si 1.00 43.13 29.55 68.60 2.03 45.15 16 22 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 25 C -0.17 -1.31 4.87 -10.79 -0.05 -1.36 16 26 C -0.18 -1.31 9.63 30.59 0.29 -1.01 16 27 C -0.15 -0.38 9.71 30.60 0.30 -0.08 16 28 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.12 -0.28 7.68 -2.39 -0.02 -0.30 16 30 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.43 -0.70 7.95 -92.71 -0.74 -1.44 16 32 H 0.05 1.07 6.31 -2.39 -0.02 1.05 16 33 H 0.07 0.97 6.78 -2.39 -0.02 0.95 16 34 H 0.09 0.73 6.98 -2.39 -0.02 0.72 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.82 6.04 -2.39 -0.01 1.80 16 37 H 0.42 6.10 7.43 -92.71 -0.69 5.41 16 38 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 39 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.11 0.93 7.09 -2.39 -0.02 0.92 16 42 H 0.10 0.79 5.88 -2.39 -0.01 0.77 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.11 0.06 7.34 -2.39 -0.02 0.04 16 Total: -1.00 -96.46 389.41 2.89 -93.57 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -0.38 Total: 8.26 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.09 Total: 3.16 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -3.59 Total: -96.38 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.09 Total: -43.58 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -96.46 2.89 -93.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.229 kcal (2) G-P(sol) polarization free energy of solvation -96.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds