Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46661 * 2 1 4 4 C 1.47196 * 109.47143 * 119.99954 * 2 1 3 5 5 N 2.60796 * 109.47177 * 120.00250 * 2 1 3 6 6 C 1.50699 * 109.47152 * 240.00263 * 2 1 3 7 7 O 1.21272 * 119.99901 * 239.99945 * 6 2 1 8 8 N 1.34778 * 119.99713 * 59.72603 * 6 2 1 9 9 C 1.46496 * 119.99677 * 175.85715 * 8 6 2 10 10 C 1.53004 * 109.46999 * 174.05397 * 9 8 6 11 11 C 1.52999 * 109.47639 * 54.05597 * 9 8 6 12 12 N 1.46501 * 109.47294 * 59.99559 * 11 9 8 13 13 C 1.34772 * 119.99928 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00053 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47415 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00191 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99699 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00149 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99541 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47016 * 90.00270 * 21 19 17 23 23 H 1.48498 * 109.46814 * 209.99699 * 21 19 17 24 24 H 1.48493 * 109.47204 * 329.99934 * 21 19 17 25 25 C 1.53003 * 109.47013 * 294.05100 * 9 8 6 26 26 C 1.53001 * 117.49714 * 2.16394 * 25 9 8 27 27 C 1.52994 * 117.49726 * 293.50099 * 25 9 8 28 28 H 1.08994 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46741 * 299.99749 * 1 2 3 30 30 H 1.08997 * 109.47480 * 59.99519 * 1 2 3 31 31 H 0.97004 * 120.00180 * 355.84717 * 8 6 2 32 32 H 1.09002 * 109.47076 * 59.99849 * 10 9 8 33 33 H 1.09004 * 109.47027 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.47090 * 299.99745 * 10 9 8 35 35 H 1.08997 * 109.47662 * 180.02562 * 11 9 8 36 36 H 1.09008 * 109.46614 * 299.99924 * 11 9 8 37 37 H 0.96997 * 119.99678 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.47366 * 300.00427 * 15 13 12 39 39 H 1.09008 * 109.46971 * 60.00437 * 15 13 12 40 40 H 0.97003 * 119.99496 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.54682 * 147.83036 * 25 9 8 42 42 H 1.08994 * 117.49647 * 359.97438 * 26 25 9 43 43 H 1.09003 * 117.49416 * 145.02314 * 26 25 9 44 44 H 1.08999 * 117.49696 * 214.97769 * 27 25 9 45 45 H 1.09000 * 117.50569 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2295 2.1293 6 6 2.0324 -0.7103 -1.2305 7 8 2.7296 -1.6963 -1.1192 8 7 1.7022 -0.2530 -2.4545 9 6 2.2634 -0.8879 -3.6496 10 6 1.6199 -0.2823 -4.8987 11 6 1.9816 -2.3911 -3.6086 12 7 0.5345 -2.6159 -3.5702 13 6 0.0485 -3.8723 -3.5297 14 8 0.8092 -4.8168 -3.5246 15 6 -1.4401 -4.1035 -3.4907 16 16 -1.7734 -5.8819 -3.4406 17 6 -3.5349 -5.8621 -3.4024 18 1 -4.0647 -4.9211 -3.4129 19 6 -4.2416 -7.0560 -3.3586 20 7 -3.5957 -8.2028 -3.3453 21 14 -6.1090 -7.0349 -3.3173 22 1 -6.6351 -7.0622 -4.7058 23 1 -6.6011 -8.2252 -2.5782 24 1 -6.5751 -5.8010 -2.6354 25 6 3.7748 -0.6531 -3.6897 26 6 4.4026 0.1089 -2.5209 27 6 4.2615 0.7838 -3.8876 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.0928 0.4964 -2.5442 32 1 1.8207 0.7887 -4.9279 33 1 2.0378 -0.7544 -5.7879 34 1 0.5432 -0.4495 -4.8701 35 1 2.3996 -2.8636 -4.4975 36 1 2.4401 -2.8226 -2.7187 37 1 -0.0739 -1.8604 -3.5739 38 1 -1.8582 -3.6307 -2.6020 39 1 -1.8982 -3.6726 -4.3811 40 1 -4.0896 -9.0372 -3.3151 41 1 4.3625 -1.4507 -4.1441 42 1 3.7388 0.4434 -1.7237 43 1 5.4035 -0.1870 -2.2068 44 1 5.1696 0.9315 -4.4720 45 1 3.5050 1.5620 -3.9889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297574899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -12.662084 kcal Electronic energy + Delta-G solvation = -27481.470612 eV Core-core repulsion = 23626.764628 eV Total energy + Delta-G solvation = -3854.705984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36465 -39.04864 -38.18684 -36.65009 -35.30527 -34.26850 -33.08754 -32.41728 -31.03575 -29.28856 -26.71979 -25.74705 -25.44827 -23.23419 -22.62025 -22.10312 -20.30213 -19.73165 -18.42726 -17.93345 -17.66092 -16.78634 -16.36114 -16.00628 -15.64699 -15.18016 -14.92329 -14.79481 -14.52872 -14.40623 -14.02670 -13.81056 -13.41262 -13.39128 -13.03708 -12.88946 -12.84544 -12.82202 -12.63499 -12.56507 -12.23511 -12.00166 -11.88597 -11.83097 -11.63679 -11.49062 -11.05983 -11.01481 -10.77788 -10.70886 -10.50720 -9.95612 -9.81431 -9.55714 -9.31515 -9.05885 -8.71692 -8.20752 -6.48042 -6.20360 -3.90735 2.12434 2.14995 2.54133 2.90388 3.05538 3.18003 3.22477 3.27998 3.31504 3.42402 3.46881 3.75232 4.16627 4.21325 4.28343 4.35430 4.40414 4.47171 4.50470 4.71394 4.83004 4.98693 5.02909 5.14590 5.16679 5.17584 5.26974 5.32359 5.37103 5.51745 5.58972 5.60353 5.65968 5.69909 5.78329 5.81462 5.89597 6.05144 6.13111 6.18832 6.67176 6.99411 7.30059 7.60016 7.73861 7.79577 8.35899 8.69062 9.24633 10.87041 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002820 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.087517 B = 9925.443038 C =10935.034046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.012 4.012 3 H 0.138 0.862 4 C 0.216 3.784 5 N -0.405 5.405 6 C 0.525 3.475 7 O -0.501 6.501 8 N -0.722 5.722 9 C 0.200 3.800 10 C -0.154 4.154 11 C 0.106 3.894 12 N -0.733 5.733 13 C 0.530 3.470 14 O -0.514 6.514 15 C -0.152 4.152 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.152 4.152 26 C -0.163 4.163 27 C -0.175 4.175 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.402 0.598 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.392 0.608 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 27.747 -1.237 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 H 0.155 0.845 4 C -0.103 4.103 5 N -0.080 5.080 6 C 0.309 3.691 7 O -0.374 6.374 8 N -0.376 5.376 9 C 0.114 3.886 10 C -0.212 4.212 11 C -0.018 4.018 12 N -0.388 5.388 13 C 0.316 3.684 14 O -0.388 6.388 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.172 4.172 26 C -0.200 4.200 27 C -0.212 4.212 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.238 0.762 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.226 0.774 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.102 24.411 0.272 27.706 hybrid contribution -2.762 2.039 -0.414 3.458 sum 10.340 26.450 -0.142 28.400 Atomic orbital electron populations 1.21839 0.89399 1.04952 1.04368 1.18875 0.99021 0.99887 0.85851 0.84462 1.28013 0.94065 0.94171 0.94065 1.81222 1.07506 1.07236 1.12032 1.19862 0.80610 0.84649 0.84016 1.90801 1.36345 1.24234 1.86027 1.46034 1.49818 1.36807 1.04950 1.20078 0.91501 0.92653 0.84409 1.22088 1.01182 1.01387 0.96525 1.21825 0.82100 0.93221 1.04675 1.45870 1.06986 1.07939 1.78024 1.20256 0.90492 0.82248 0.75409 1.90715 1.59519 1.41359 1.47228 1.23512 0.93950 1.08155 1.04615 1.85467 1.06905 0.94338 1.96571 1.22861 0.91256 0.95390 1.58890 0.90988 1.24995 0.99442 0.94591 0.94588 1.70023 1.35974 0.97439 1.46779 0.86174 0.83218 0.77842 0.78287 1.20283 1.20770 1.19718 1.22498 0.94307 0.95880 1.04501 1.22961 1.01992 1.03481 0.91591 1.22997 1.02977 0.94952 1.00237 0.90476 0.90144 0.89916 0.76240 0.91405 0.90063 0.91451 0.91108 0.88080 0.77413 0.89509 0.89390 0.92188 0.86712 0.89165 0.88950 0.88812 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.04 37.16 0.34 -0.25 16 2 C -0.01 -0.07 3.11 -94.56 -0.29 -0.36 16 3 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 4 C 0.22 2.32 13.88 -20.76 -0.29 2.03 16 5 N -0.41 -5.78 18.54 42.15 0.78 -5.00 16 6 C 0.52 4.26 4.18 -10.99 -0.05 4.21 16 7 O -0.50 -6.69 12.36 5.56 0.07 -6.63 16 8 N -0.72 -3.67 4.09 -47.61 -0.19 -3.87 16 9 C 0.20 1.39 0.55 -131.82 -0.07 1.31 16 10 C -0.15 -0.73 8.18 37.16 0.30 -0.42 16 11 C 0.11 1.26 4.22 -4.04 -0.02 1.25 16 12 N -0.73 -9.31 5.13 -60.29 -0.31 -9.62 16 13 C 0.53 9.95 7.85 -10.99 -0.09 9.86 16 14 O -0.51 -12.13 15.86 5.56 0.09 -12.04 16 15 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.15 -1.11 4.89 -90.62 -0.44 -1.56 16 26 C -0.16 -1.19 8.62 -26.69 -0.23 -1.42 16 27 C -0.17 -0.92 9.68 -26.69 -0.26 -1.18 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.08 7.46 -51.93 -0.39 -0.31 16 31 H 0.40 0.59 7.77 -40.82 -0.32 0.27 16 32 H 0.07 0.20 6.91 -51.93 -0.36 -0.16 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.30 6.86 -51.93 -0.36 -0.06 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.58 5.63 -51.92 -0.29 1.29 16 37 H 0.39 3.59 7.15 -40.82 -0.29 3.30 16 38 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 39 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.11 0.94 8.06 -51.93 -0.42 0.53 16 42 H 0.09 0.62 5.21 -51.93 -0.27 0.35 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.36 7.20 -51.93 -0.37 -0.01 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -40.25 387.66 -7.32 -47.56 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.42 Total: -0.86 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.68 Total: -2.28 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.01 Total: -44.10 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.67 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.25 -7.32 -47.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.902 kcal (2) G-P(sol) polarization free energy of solvation -40.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds