Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46661 * 2 1 4 4 C 1.47196 * 109.47143 * 119.99954 * 2 1 3 5 5 N 2.60796 * 109.47177 * 120.00250 * 2 1 3 6 6 C 1.50699 * 109.47152 * 240.00263 * 2 1 3 7 7 O 1.21272 * 119.99901 * 239.99945 * 6 2 1 8 8 N 1.34778 * 119.99713 * 59.72603 * 6 2 1 9 9 C 1.46496 * 119.99677 * 175.85715 * 8 6 2 10 10 C 1.53004 * 109.46999 * 174.05397 * 9 8 6 11 11 C 1.52999 * 109.47639 * 54.05597 * 9 8 6 12 12 N 1.46501 * 109.47294 * 59.99559 * 11 9 8 13 13 C 1.34772 * 119.99928 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00125 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00053 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47415 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00191 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99699 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00149 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99541 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47016 * 90.00270 * 21 19 17 23 23 H 1.48498 * 109.46814 * 209.99699 * 21 19 17 24 24 H 1.48493 * 109.47204 * 329.99934 * 21 19 17 25 25 C 1.53003 * 109.47013 * 294.05100 * 9 8 6 26 26 C 1.53001 * 117.49714 * 2.16394 * 25 9 8 27 27 C 1.52994 * 117.49726 * 293.50099 * 25 9 8 28 28 H 1.08994 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46741 * 299.99749 * 1 2 3 30 30 H 1.08997 * 109.47480 * 59.99519 * 1 2 3 31 31 H 0.97004 * 120.00180 * 355.84717 * 8 6 2 32 32 H 1.09002 * 109.47076 * 59.99849 * 10 9 8 33 33 H 1.09004 * 109.47027 * 179.97438 * 10 9 8 34 34 H 1.09003 * 109.47090 * 299.99745 * 10 9 8 35 35 H 1.08997 * 109.47662 * 180.02562 * 11 9 8 36 36 H 1.09008 * 109.46614 * 299.99924 * 11 9 8 37 37 H 0.96997 * 119.99678 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.47366 * 300.00427 * 15 13 12 39 39 H 1.09008 * 109.46971 * 60.00437 * 15 13 12 40 40 H 0.97003 * 119.99496 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.54682 * 147.83036 * 25 9 8 42 42 H 1.08994 * 117.49647 * 359.97438 * 26 25 9 43 43 H 1.09003 * 117.49416 * 145.02314 * 26 25 9 44 44 H 1.08999 * 117.49696 * 214.97769 * 27 25 9 45 45 H 1.09000 * 117.50569 * 0.02562 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2295 2.1293 6 6 2.0324 -0.7103 -1.2305 7 8 2.7296 -1.6963 -1.1192 8 7 1.7022 -0.2530 -2.4545 9 6 2.2634 -0.8879 -3.6496 10 6 1.6199 -0.2823 -4.8987 11 6 1.9816 -2.3911 -3.6086 12 7 0.5345 -2.6159 -3.5702 13 6 0.0485 -3.8723 -3.5297 14 8 0.8092 -4.8168 -3.5246 15 6 -1.4401 -4.1035 -3.4907 16 16 -1.7734 -5.8819 -3.4406 17 6 -3.5349 -5.8621 -3.4024 18 1 -4.0647 -4.9211 -3.4129 19 6 -4.2416 -7.0560 -3.3586 20 7 -3.5957 -8.2028 -3.3453 21 14 -6.1090 -7.0349 -3.3173 22 1 -6.6351 -7.0622 -4.7058 23 1 -6.6011 -8.2252 -2.5782 24 1 -6.5751 -5.8010 -2.6354 25 6 3.7748 -0.6531 -3.6897 26 6 4.4026 0.1089 -2.5209 27 6 4.2615 0.7838 -3.8876 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.0928 0.4964 -2.5442 32 1 1.8207 0.7887 -4.9279 33 1 2.0378 -0.7544 -5.7879 34 1 0.5432 -0.4495 -4.8701 35 1 2.3996 -2.8636 -4.4975 36 1 2.4401 -2.8226 -2.7187 37 1 -0.0739 -1.8604 -3.5739 38 1 -1.8582 -3.6307 -2.6020 39 1 -1.8982 -3.6726 -4.3811 40 1 -4.0896 -9.0372 -3.3151 41 1 4.3625 -1.4507 -4.1441 42 1 3.7388 0.4434 -1.7237 43 1 5.4035 -0.1870 -2.2068 44 1 5.1696 0.9315 -4.4720 45 1 3.5050 1.5620 -3.9889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297574899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -43.880921 kcal Electronic energy + Delta-G solvation = -27482.824362 eV Core-core repulsion = 23626.764628 eV Total energy + Delta-G solvation = -3856.059734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05193 -40.41554 -38.94297 -37.50622 -36.21301 -35.04739 -34.57523 -33.91999 -31.88991 -30.55770 -27.80654 -27.36383 -26.18681 -24.02678 -23.09971 -22.77234 -21.66522 -20.43526 -19.83589 -19.06119 -18.25155 -18.00808 -17.39501 -17.01544 -16.87187 -16.56985 -16.17867 -16.08310 -15.60721 -15.24192 -15.02839 -14.77806 -14.71430 -14.38758 -14.15157 -13.94964 -13.77023 -13.60670 -13.28652 -13.24486 -13.21083 -13.15271 -12.87579 -12.74605 -12.62516 -12.48299 -12.43565 -12.21653 -12.06055 -11.72802 -11.27306 -11.13284 -11.10367 -10.93350 -10.66165 -10.25040 -10.16477 -9.93364 -8.66567 -8.33443 -6.12081 1.27722 1.41407 1.43684 1.48756 1.52383 1.58434 1.65711 1.73966 2.22152 2.28445 2.34186 2.80670 2.95701 3.00875 3.34048 3.63979 3.67831 3.77617 3.94446 3.96716 4.03594 4.14328 4.22236 4.28014 4.32647 4.50186 4.51751 4.61450 4.82159 4.83903 4.86180 4.88292 4.96096 5.05286 5.11221 5.22317 5.30505 5.32652 5.37575 5.42560 5.44578 5.56557 6.20789 6.43431 6.54552 6.61246 7.07551 7.26775 7.30587 8.75892 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002820 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.087517 B = 9925.443038 C =10935.034046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 H 0.194 0.806 4 C 0.237 3.763 5 N -0.483 5.483 6 C 0.522 3.478 7 O -0.561 6.561 8 N -0.700 5.700 9 C 0.214 3.786 10 C -0.151 4.151 11 C 0.106 3.894 12 N -0.699 5.699 13 C 0.529 3.471 14 O -0.573 6.573 15 C -0.124 4.124 16 S -0.162 6.162 17 C -0.542 4.542 18 H 0.087 0.913 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 1.001 2.999 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.255 1.255 25 C -0.171 4.171 26 C -0.180 4.180 27 C -0.141 4.141 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.427 0.573 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.415 0.585 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 32.908 -2.568 34.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.211 0.789 4 C -0.081 4.081 5 N -0.159 5.159 6 C 0.307 3.693 7 O -0.438 6.438 8 N -0.355 5.355 9 C 0.127 3.873 10 C -0.208 4.208 11 C -0.018 4.018 12 N -0.353 5.353 13 C 0.314 3.686 14 O -0.451 6.451 15 C -0.275 4.275 16 S 0.065 5.935 17 C -0.690 4.690 18 H 0.105 0.895 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.822 3.178 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.191 4.191 26 C -0.217 4.217 27 C -0.178 4.178 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.268 0.732 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.603 29.696 -1.080 31.551 hybrid contribution -1.862 0.511 -0.026 1.931 sum 8.741 30.207 -1.106 31.466 Atomic orbital electron populations 1.21945 0.87512 1.03734 1.07242 1.19303 1.00184 1.01367 0.82099 0.78936 1.29088 0.92145 0.92665 0.94179 1.81225 1.10111 1.09664 1.14852 1.20344 0.79652 0.83895 0.85377 1.90820 1.39128 1.26982 1.86892 1.45821 1.49423 1.36886 1.03419 1.19862 0.91876 0.89240 0.86297 1.22116 1.01310 1.03095 0.94307 1.21847 0.80583 0.97159 1.02259 1.45498 1.07984 1.06581 1.75262 1.20162 0.89748 0.83411 0.75237 1.90704 1.60501 1.43620 1.50296 1.23333 0.95138 1.02145 1.06898 1.85749 1.08376 1.02416 1.96951 1.23205 0.90973 0.96228 1.58607 0.89520 1.26183 1.05472 0.93979 0.93792 1.70208 1.38382 0.98335 1.48134 0.84922 0.75673 0.78389 0.78798 1.19149 1.20682 1.17829 1.22445 0.94259 0.97104 1.05258 1.22983 1.01274 1.04695 0.92759 1.23099 1.03452 0.93541 0.97707 0.93675 0.88742 0.85665 0.73229 0.88112 0.90761 0.90447 0.92439 0.91900 0.74707 0.87278 0.86604 0.92108 0.88858 0.88409 0.90917 0.88426 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.04 71.98 0.65 0.06 16 2 C -0.01 -0.05 3.11 -13.35 -0.04 -0.09 16 3 H 0.19 -0.52 8.14 -2.39 -0.02 -0.54 16 4 C 0.24 5.01 13.88 89.44 1.24 6.26 16 5 N -0.48 -14.44 18.54 20.00 0.37 -14.07 16 6 C 0.52 7.45 4.18 87.66 0.37 7.82 16 7 O -0.56 -15.42 12.36 -3.00 -0.04 -15.46 16 8 N -0.70 -4.51 4.09 -422.93 -1.73 -6.24 16 9 C 0.21 2.47 0.55 3.61 0.00 2.48 16 10 C -0.15 -0.75 8.18 71.98 0.59 -0.16 16 11 C 0.11 2.54 4.22 86.38 0.36 2.90 16 12 N -0.70 -16.79 5.13 -463.06 -2.37 -19.17 16 13 C 0.53 19.91 7.85 87.66 0.69 20.60 16 14 O -0.57 -28.40 15.86 -3.02 -0.05 -28.44 16 15 C -0.12 -4.83 6.16 71.24 0.44 -4.39 16 16 S -0.16 -9.14 20.57 -56.49 -1.16 -10.31 16 17 C -0.54 -30.85 9.50 67.95 0.65 -30.20 16 18 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 19 C 0.01 0.58 5.49 84.86 0.47 1.04 16 20 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 21 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 25 C -0.17 -2.30 4.89 -10.79 -0.05 -2.35 16 26 C -0.18 -2.39 8.62 30.62 0.26 -2.12 16 27 C -0.14 -1.00 9.68 30.62 0.30 -0.71 16 28 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.12 -0.55 7.46 -2.39 -0.02 -0.57 16 31 H 0.43 -1.45 7.77 -92.71 -0.72 -2.17 16 32 H 0.10 -0.08 6.91 -2.39 -0.02 -0.10 16 33 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.08 0.26 6.86 -2.39 -0.02 0.24 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.10 5.63 -2.38 -0.01 2.09 16 37 H 0.41 6.08 7.15 -92.71 -0.66 5.42 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 42 H 0.10 1.11 5.21 -2.39 -0.01 1.09 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.12 0.19 7.20 -2.39 -0.02 0.17 16 Total: -1.00 -99.06 387.66 2.91 -96.15 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -0.34 Total: 7.65 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.92 Total: 1.14 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -3.45 Total: -96.14 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.09 Total: -43.91 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.31 kcal Total: -99.06 2.91 -96.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.268 kcal (2) G-P(sol) polarization free energy of solvation -99.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds