Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47510 * 2 1 4 4 C 1.47204 * 109.46832 * 240.00182 * 2 1 3 5 5 N 2.60803 * 109.46681 * 240.00009 * 2 1 3 6 6 C 1.50698 * 109.46954 * 120.00395 * 2 1 3 7 7 O 1.21290 * 119.99834 * 119.99519 * 6 2 1 8 8 N 1.34772 * 120.00296 * 299.99336 * 6 2 1 9 9 C 1.46497 * 120.00506 * 185.17100 * 8 6 2 10 10 C 1.52997 * 109.47317 * 184.00637 * 9 8 6 11 11 C 1.52997 * 109.46883 * 64.00560 * 9 8 6 12 12 N 1.46497 * 109.47050 * 60.00423 * 11 9 8 13 13 C 1.34778 * 120.00070 * 179.97438 * 12 11 9 14 14 O 1.21274 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99961 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47067 * 180.02562 * 15 13 12 17 17 C 1.76192 * 99.99928 * 180.02562 * 16 15 13 18 18 H 1.08009 * 120.00456 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99336 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00518 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46786 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47572 * 119.99946 * 21 19 17 24 24 H 1.48509 * 109.46981 * 240.00208 * 21 19 17 25 25 C 1.53007 * 109.47038 * 304.01064 * 9 8 6 26 26 C 1.53002 * 117.51311 * 228.44527 * 25 9 8 27 27 C 1.52993 * 59.99878 * 107.48174 * 26 25 9 28 28 H 1.09001 * 109.47298 * 59.99342 * 1 2 3 29 29 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46742 * 300.00183 * 1 2 3 31 31 H 0.97007 * 119.99899 * 5.17896 * 8 6 2 32 32 H 1.09005 * 109.46981 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.47564 * 299.99944 * 10 9 8 34 34 H 1.09003 * 109.46935 * 60.00623 * 10 9 8 35 35 H 1.09007 * 109.47486 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47270 * 300.00266 * 11 9 8 37 37 H 0.97004 * 120.00272 * 359.97438 * 12 11 9 38 38 H 1.08996 * 109.47415 * 300.00236 * 15 13 12 39 39 H 1.08999 * 109.46899 * 60.00241 * 15 13 12 40 40 H 0.97000 * 119.99624 * 179.97438 * 20 19 17 41 41 H 1.08991 * 115.55342 * 82.74684 * 25 9 8 42 42 H 1.09001 * 117.49462 * 214.96964 * 26 25 9 43 43 H 1.08997 * 117.50302 * 359.97438 * 26 25 9 44 44 H 1.09011 * 117.49598 * 252.50890 * 27 26 25 45 45 H 1.08994 * 117.50231 * 107.49266 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3992 -1.2295 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.7295 -1.6967 1.1190 8 7 1.7068 -0.2501 2.4545 9 6 2.2858 -0.8709 3.6485 10 6 1.6805 -0.2320 4.9000 11 6 3.8010 -0.6590 3.6497 12 7 4.0933 0.7765 3.6552 13 6 5.3715 1.2039 3.6577 14 8 6.2797 0.4002 3.6548 15 6 5.6722 2.6806 3.6628 16 16 7.4648 2.9313 3.6643 17 6 7.5274 4.6921 3.6711 18 1 6.6119 5.2652 3.6734 19 6 8.7534 5.3431 3.6734 20 7 9.8692 4.6447 3.6711 21 14 8.8199 7.2098 3.6813 22 1 7.4382 7.7543 3.6835 23 1 9.5375 7.6745 4.8955 24 1 9.5367 7.6847 2.4705 25 6 1.9805 -2.3702 3.6427 26 6 1.4184 -2.9820 4.9275 27 6 0.5114 -2.7923 3.7100 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.0891 0.4924 2.5450 32 1 2.1109 -0.6943 5.7884 33 1 1.8980 0.8360 4.9042 34 1 0.6010 -0.3830 4.8992 35 1 4.2319 -1.1213 4.5378 36 1 4.2322 -1.1142 2.7581 37 1 3.3669 1.4194 3.6571 38 1 5.2419 3.1422 2.7741 39 1 5.2405 3.1362 4.5540 40 1 10.7259 5.0996 3.6723 41 1 2.6538 -2.9848 3.0453 42 1 1.7219 -3.9992 5.1752 43 1 1.2663 -2.3166 5.7773 44 1 -0.2376 -2.0018 3.7588 45 1 0.2183 -3.6845 3.1569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297574900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -20.303421 kcal Electronic energy + Delta-G solvation = -27126.327709 eV Core-core repulsion = 23271.290372 eV Total energy + Delta-G solvation = -3855.037337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.12568 -39.17168 -38.39896 -36.71984 -35.36657 -34.24559 -33.17599 -32.43682 -30.78273 -29.26440 -26.89403 -25.80768 -25.47436 -23.46433 -22.67480 -21.92416 -20.33984 -19.46572 -18.47331 -17.94149 -17.56572 -16.78250 -16.44337 -15.98168 -15.68959 -15.37633 -14.89555 -14.81564 -14.61411 -14.54800 -14.08526 -13.79080 -13.48839 -13.31339 -13.14984 -13.04938 -12.87220 -12.73138 -12.65104 -12.58365 -12.28492 -12.07665 -11.88585 -11.74927 -11.63278 -11.39848 -11.08265 -11.02890 -10.80537 -10.77677 -10.54970 -9.97234 -9.82348 -9.55292 -9.36197 -9.08689 -8.86084 -8.23089 -6.50600 -6.22501 -3.93046 2.12128 2.16632 2.54226 2.85428 3.03261 3.11617 3.20530 3.27240 3.31200 3.41982 3.58632 3.68526 4.08612 4.19242 4.30877 4.35350 4.38645 4.46614 4.56304 4.72317 4.76076 4.92966 4.96613 5.11091 5.12519 5.12689 5.25150 5.36354 5.39387 5.44632 5.49042 5.51727 5.63805 5.70025 5.79913 5.85997 5.94090 5.98571 6.09541 6.10504 6.59042 6.99355 7.29714 7.58454 7.68134 7.78146 8.34116 8.62459 9.22748 10.84945 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002689 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.813130 B =10409.125018 C =11561.960496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 H 0.142 0.858 4 C 0.219 3.781 5 N -0.409 5.409 6 C 0.529 3.471 7 O -0.512 6.512 8 N -0.717 5.717 9 C 0.200 3.800 10 C -0.162 4.162 11 C 0.115 3.885 12 N -0.735 5.735 13 C 0.530 3.470 14 O -0.514 6.514 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.151 4.151 26 C -0.180 4.180 27 C -0.168 4.168 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.402 0.598 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.654 -8.744 1.073 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.160 0.840 4 C -0.100 4.100 5 N -0.083 5.083 6 C 0.312 3.688 7 O -0.386 6.386 8 N -0.370 5.370 9 C 0.114 3.886 10 C -0.219 4.219 11 C -0.010 4.010 12 N -0.391 5.391 13 C 0.316 3.684 14 O -0.387 6.387 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.171 4.171 26 C -0.217 4.217 27 C -0.206 4.206 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.238 0.762 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.812 -11.620 -0.421 27.401 hybrid contribution -1.701 3.033 0.377 3.498 sum -26.513 -8.587 -0.045 27.868 Atomic orbital electron populations 1.21792 0.89654 1.04232 1.04379 1.18865 0.98657 1.00464 0.85791 0.84042 1.28022 0.93964 0.94044 0.94019 1.81210 1.07298 1.07812 1.12023 1.19894 0.80434 0.84455 0.83972 1.90789 1.36586 1.24918 1.86270 1.45996 1.48817 1.37345 1.04862 1.20025 0.92567 0.91500 0.84465 1.22236 1.01397 1.01521 0.96781 1.21628 0.93039 0.82412 1.03941 1.45918 1.07806 1.07122 1.78217 1.20301 0.81967 0.90819 0.75340 1.90720 1.44693 1.56219 1.47111 1.23516 1.07999 0.94030 1.04727 1.85474 0.93411 1.07760 1.96686 1.22899 0.95327 0.91235 1.58900 0.90909 1.25001 0.94684 0.99386 0.94568 1.70031 0.97572 1.35740 1.46852 0.86118 0.78260 0.83196 0.77909 1.19626 1.20572 1.20585 1.22510 0.97880 0.94701 1.01986 1.23189 1.03980 1.02383 0.92143 1.22829 0.92827 1.03022 1.01882 0.90226 0.91010 0.89982 0.76249 0.89734 0.91312 0.91305 0.90532 0.89933 0.77277 0.89397 0.89310 0.92224 0.86172 0.88712 0.88007 0.88917 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.34 9.04 37.16 0.34 0.00 16 2 C -0.01 -0.08 3.11 -94.56 -0.29 -0.37 16 3 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 4 C 0.22 2.34 13.88 -20.76 -0.29 2.05 16 5 N -0.41 -5.77 18.54 42.15 0.78 -4.99 16 6 C 0.53 4.33 6.55 -10.99 -0.07 4.26 16 7 O -0.51 -6.70 12.85 5.55 0.07 -6.63 16 8 N -0.72 -3.74 4.63 -47.61 -0.22 -3.96 16 9 C 0.20 1.40 0.54 -131.82 -0.07 1.33 16 10 C -0.16 -0.74 7.04 37.16 0.26 -0.48 16 11 C 0.11 1.32 4.44 -4.04 -0.02 1.30 16 12 N -0.74 -8.88 5.13 -60.29 -0.31 -9.19 16 13 C 0.53 9.60 7.85 -10.98 -0.09 9.52 16 14 O -0.51 -11.79 15.86 5.56 0.09 -11.70 16 15 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 18 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 21 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.15 -1.20 4.05 -90.62 -0.37 -1.56 16 26 C -0.18 -1.12 9.61 -26.73 -0.26 -1.38 16 27 C -0.17 -1.02 9.81 -26.74 -0.26 -1.29 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 -0.02 7.46 -51.93 -0.39 -0.41 16 31 H 0.40 0.64 7.76 -40.82 -0.32 0.32 16 32 H 0.08 0.44 6.83 -51.93 -0.35 0.09 16 33 H 0.07 0.28 6.86 -51.93 -0.36 -0.08 16 34 H 0.07 0.21 7.01 -51.93 -0.36 -0.16 16 35 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.08 1.24 6.65 -51.93 -0.35 0.89 16 37 H 0.39 3.32 7.15 -40.82 -0.29 3.02 16 38 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.12 1.31 7.18 -51.93 -0.37 0.94 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.52 5.87 -51.93 -0.30 0.21 16 44 H 0.09 0.43 7.42 -51.92 -0.39 0.04 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -39.73 390.19 -7.31 -47.04 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.41 Total: -1.29 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.70 Total: -2.13 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.99 Total: -43.48 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.16 Total: -18.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.73 -7.31 -47.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.737 kcal (2) G-P(sol) polarization free energy of solvation -39.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds