Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47510 * 2 1 4 4 C 1.47204 * 109.46832 * 240.00182 * 2 1 3 5 5 N 2.60803 * 109.46681 * 240.00009 * 2 1 3 6 6 C 1.50698 * 109.46954 * 120.00395 * 2 1 3 7 7 O 1.21290 * 119.99834 * 119.99519 * 6 2 1 8 8 N 1.34772 * 120.00296 * 299.99336 * 6 2 1 9 9 C 1.46497 * 120.00506 * 185.17100 * 8 6 2 10 10 C 1.52997 * 109.47317 * 184.00637 * 9 8 6 11 11 C 1.52997 * 109.46883 * 64.00560 * 9 8 6 12 12 N 1.46497 * 109.47050 * 60.00423 * 11 9 8 13 13 C 1.34778 * 120.00070 * 179.97438 * 12 11 9 14 14 O 1.21274 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99961 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47067 * 180.02562 * 15 13 12 17 17 C 1.76192 * 99.99928 * 180.02562 * 16 15 13 18 18 H 1.08009 * 120.00456 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99336 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00518 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46786 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47572 * 119.99946 * 21 19 17 24 24 H 1.48509 * 109.46981 * 240.00208 * 21 19 17 25 25 C 1.53007 * 109.47038 * 304.01064 * 9 8 6 26 26 C 1.53002 * 117.51311 * 228.44527 * 25 9 8 27 27 C 1.52993 * 59.99878 * 107.48174 * 26 25 9 28 28 H 1.09001 * 109.47298 * 59.99342 * 1 2 3 29 29 H 1.08998 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46742 * 300.00183 * 1 2 3 31 31 H 0.97007 * 119.99899 * 5.17896 * 8 6 2 32 32 H 1.09005 * 109.46981 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.47564 * 299.99944 * 10 9 8 34 34 H 1.09003 * 109.46935 * 60.00623 * 10 9 8 35 35 H 1.09007 * 109.47486 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.47270 * 300.00266 * 11 9 8 37 37 H 0.97004 * 120.00272 * 359.97438 * 12 11 9 38 38 H 1.08996 * 109.47415 * 300.00236 * 15 13 12 39 39 H 1.08999 * 109.46899 * 60.00241 * 15 13 12 40 40 H 0.97000 * 119.99624 * 179.97438 * 20 19 17 41 41 H 1.08991 * 115.55342 * 82.74684 * 25 9 8 42 42 H 1.09001 * 117.49462 * 214.96964 * 26 25 9 43 43 H 1.08997 * 117.50302 * 359.97438 * 26 25 9 44 44 H 1.09011 * 117.49598 * 252.50890 * 27 26 25 45 45 H 1.08994 * 117.50231 * 107.49266 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3992 -1.2295 -2.1295 6 6 2.0323 -0.7105 1.2304 7 8 2.7295 -1.6967 1.1190 8 7 1.7068 -0.2501 2.4545 9 6 2.2858 -0.8709 3.6485 10 6 1.6805 -0.2320 4.9000 11 6 3.8010 -0.6590 3.6497 12 7 4.0933 0.7765 3.6552 13 6 5.3715 1.2039 3.6577 14 8 6.2797 0.4002 3.6548 15 6 5.6722 2.6806 3.6628 16 16 7.4648 2.9313 3.6643 17 6 7.5274 4.6921 3.6711 18 1 6.6119 5.2652 3.6734 19 6 8.7534 5.3431 3.6734 20 7 9.8692 4.6447 3.6711 21 14 8.8199 7.2098 3.6813 22 1 7.4382 7.7543 3.6835 23 1 9.5375 7.6745 4.8955 24 1 9.5367 7.6847 2.4705 25 6 1.9805 -2.3702 3.6427 26 6 1.4184 -2.9820 4.9275 27 6 0.5114 -2.7923 3.7100 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.0891 0.4924 2.5450 32 1 2.1109 -0.6943 5.7884 33 1 1.8980 0.8360 4.9042 34 1 0.6010 -0.3830 4.8992 35 1 4.2319 -1.1213 4.5378 36 1 4.2322 -1.1142 2.7581 37 1 3.3669 1.4194 3.6571 38 1 5.2419 3.1422 2.7741 39 1 5.2405 3.1362 4.5540 40 1 10.7259 5.0996 3.6723 41 1 2.6538 -2.9848 3.0453 42 1 1.7219 -3.9992 5.1752 43 1 1.2663 -2.3166 5.7773 44 1 -0.2376 -2.0018 3.7588 45 1 0.2183 -3.6845 3.1569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297574900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -50.926118 kcal Electronic energy + Delta-G solvation = -27127.655609 eV Core-core repulsion = 23271.290372 eV Total energy + Delta-G solvation = -3856.365237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82743 -40.42916 -39.18776 -37.57506 -36.25099 -35.05985 -34.56151 -33.94430 -31.71847 -30.38015 -27.85091 -27.45464 -26.17873 -24.24207 -23.22896 -22.56158 -21.66871 -20.20683 -19.78773 -19.08701 -18.20649 -17.92500 -17.38878 -17.05907 -16.86061 -16.59773 -16.27670 -15.95788 -15.67225 -15.43362 -15.13184 -14.82103 -14.59002 -14.31505 -14.25243 -14.00430 -13.77187 -13.63641 -13.29659 -13.19903 -13.17240 -13.12830 -12.89656 -12.75604 -12.59588 -12.49185 -12.37973 -12.12109 -11.96055 -11.69373 -11.37335 -11.17915 -11.14118 -10.91654 -10.63125 -10.22684 -10.16500 -10.07315 -8.64895 -8.32488 -6.10611 1.29023 1.40844 1.43558 1.50045 1.54131 1.60125 1.64933 1.73441 2.17748 2.29102 2.34425 2.80387 3.02152 3.04514 3.34815 3.49282 3.76139 3.80789 3.90793 3.98409 4.03623 4.15439 4.21892 4.27334 4.34571 4.49035 4.53825 4.59658 4.76267 4.85156 4.87603 4.90578 4.95165 5.01304 5.08822 5.28101 5.31745 5.33790 5.37373 5.42164 5.44538 5.52173 6.22327 6.42376 6.53663 6.60854 7.08991 7.26251 7.29443 8.76977 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012795 B = 0.002689 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.813130 B =10409.125018 C =11561.960496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 H 0.179 0.821 4 C 0.239 3.761 5 N -0.483 5.483 6 C 0.525 3.475 7 O -0.569 6.569 8 N -0.696 5.696 9 C 0.214 3.786 10 C -0.160 4.160 11 C 0.117 3.883 12 N -0.700 5.700 13 C 0.530 3.470 14 O -0.572 6.572 15 C -0.124 4.124 16 S -0.163 6.163 17 C -0.540 4.540 18 H 0.087 0.913 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 1.000 3.000 22 H -0.251 1.251 23 H -0.276 1.276 24 H -0.278 1.278 25 C -0.172 4.172 26 C -0.174 4.174 27 C -0.152 4.152 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.427 0.573 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.417 0.583 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.167 -5.553 2.557 32.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 H 0.196 0.804 4 C -0.080 4.080 5 N -0.159 5.159 6 C 0.310 3.690 7 O -0.447 6.447 8 N -0.350 5.350 9 C 0.128 3.872 10 C -0.217 4.217 11 C -0.008 4.008 12 N -0.355 5.355 13 C 0.315 3.685 14 O -0.450 6.450 15 C -0.276 4.276 16 S 0.064 5.936 17 C -0.688 4.688 18 H 0.106 0.894 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.822 3.178 22 H -0.175 1.175 23 H -0.201 1.201 24 H -0.203 1.203 25 C -0.192 4.192 26 C -0.211 4.211 27 C -0.189 4.189 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.256 0.744 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.442 -8.384 1.079 30.631 hybrid contribution -0.375 1.907 -0.067 1.944 sum -29.817 -6.477 1.012 30.529 Atomic orbital electron populations 1.21893 0.86359 1.04331 1.06923 1.19284 1.01029 1.00861 0.82191 0.80444 1.29083 0.92105 0.92618 0.94145 1.81209 1.09807 1.10153 1.14724 1.20379 0.79524 0.83786 0.85342 1.90803 1.39184 1.27601 1.87126 1.45792 1.48381 1.37451 1.03405 1.19811 0.89365 0.91589 0.86465 1.22278 1.03027 1.01887 0.94486 1.21625 0.96589 0.81084 1.01492 1.45526 1.06383 1.08082 1.75530 1.20196 0.83188 0.89956 0.75113 1.90714 1.46892 1.57277 1.50139 1.23341 1.01755 0.95300 1.07161 1.85760 1.01689 1.09073 1.97055 1.23240 0.96103 0.91034 1.58441 0.89449 1.26171 0.94149 1.05271 0.93858 1.70211 0.98373 1.38209 1.48287 0.84884 0.79188 0.75877 0.77856 1.17470 1.20118 1.20318 1.22307 0.98858 0.94822 1.03182 1.23292 1.03202 1.02303 0.92334 1.22909 0.91871 1.03267 1.00871 0.89123 0.92180 0.85986 0.73319 0.90077 0.89872 0.88257 0.91808 0.93906 0.74435 0.86889 0.86530 0.92145 0.90440 0.89537 0.85913 0.86074 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 9.04 71.98 0.65 0.54 16 2 C -0.01 -0.09 3.11 -13.34 -0.04 -0.13 16 3 H 0.18 0.35 8.14 -2.39 -0.02 0.33 16 4 C 0.24 5.10 13.88 89.44 1.24 6.34 16 5 N -0.48 -14.36 18.54 20.01 0.37 -13.99 16 6 C 0.52 7.80 6.55 87.66 0.57 8.38 16 7 O -0.57 -15.62 12.85 -3.06 -0.04 -15.66 16 8 N -0.70 -4.87 4.63 -422.93 -1.96 -6.83 16 9 C 0.21 2.53 0.54 3.60 0.00 2.53 16 10 C -0.16 -0.71 7.04 71.98 0.51 -0.21 16 11 C 0.12 2.69 4.44 86.38 0.38 3.07 16 12 N -0.70 -15.53 5.13 -463.06 -2.37 -17.90 16 13 C 0.53 18.91 7.85 87.66 0.69 19.60 16 14 O -0.57 -27.31 15.86 -3.01 -0.05 -27.36 16 15 C -0.12 -4.61 6.16 71.24 0.44 -4.17 16 16 S -0.16 -8.96 20.57 -56.49 -1.16 -10.13 16 17 C -0.54 -30.12 9.50 67.96 0.65 -29.48 16 18 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.55 5.49 84.86 0.47 1.02 16 20 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 21 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.17 -2.62 4.05 -10.79 -0.04 -2.67 16 26 C -0.17 -1.87 9.61 30.59 0.29 -1.58 16 27 C -0.15 -1.48 9.81 30.59 0.30 -1.18 16 28 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.12 -0.84 7.46 -2.39 -0.02 -0.86 16 31 H 0.43 -1.18 7.76 -92.70 -0.72 -1.90 16 32 H 0.08 0.52 6.83 -2.38 -0.02 0.50 16 33 H 0.08 0.18 6.86 -2.39 -0.02 0.16 16 34 H 0.10 -0.06 7.01 -2.39 -0.02 -0.08 16 35 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.04 1.38 6.65 -2.39 -0.02 1.36 16 37 H 0.42 5.22 7.15 -92.71 -0.66 4.55 16 38 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 39 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.08 1.89 7.18 -2.39 -0.02 1.87 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.12 0.82 5.87 -2.39 -0.01 0.80 16 44 H 0.12 0.50 7.42 -2.38 -0.02 0.48 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -97.27 390.19 2.86 -94.41 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -0.34 Total: 6.51 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.11 Total: 2.08 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.68 Total: -94.67 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.09 Total: -43.01 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.13 kcal Total: -97.27 2.86 -94.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.482 kcal (2) G-P(sol) polarization free energy of solvation -97.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds