Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47066 * 2 1 4 4 C 1.47205 * 109.47066 * 239.99943 * 2 1 3 5 5 N 2.60800 * 109.47248 * 239.99893 * 2 1 3 6 6 C 1.50698 * 109.47464 * 119.99953 * 2 1 3 7 7 O 1.21281 * 120.00304 * 119.99987 * 6 2 1 8 8 N 1.34778 * 119.99931 * 299.99674 * 6 2 1 9 9 C 1.46501 * 119.99975 * 185.11956 * 8 6 2 10 10 C 1.52998 * 109.47392 * 298.25675 * 9 8 6 11 11 C 1.52996 * 109.47137 * 58.25875 * 9 8 6 12 12 N 1.46507 * 109.47080 * 59.99465 * 11 9 8 13 13 C 1.34783 * 119.99734 * 179.72502 * 12 11 9 14 14 O 1.21282 * 119.99960 * 0.27698 * 13 12 11 15 15 C 1.50697 * 119.99509 * 180.27833 * 13 12 11 16 16 S 1.81003 * 109.46894 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00247 * 179.97438 * 16 15 13 18 18 H 1.08009 * 119.99714 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00323 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99703 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00256 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47141 * 90.00019 * 21 19 17 23 23 H 1.48496 * 109.46950 * 210.00237 * 21 19 17 24 24 H 1.48504 * 109.46828 * 330.00325 * 21 19 17 25 25 C 1.53004 * 109.46627 * 178.25469 * 9 8 6 26 26 C 1.53008 * 117.49552 * 132.07387 * 25 9 8 27 27 C 1.53000 * 117.50009 * 63.41592 * 25 9 8 28 28 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47193 * 300.00019 * 1 2 3 30 30 H 1.08995 * 109.47530 * 60.00158 * 1 2 3 31 31 H 0.97004 * 119.99652 * 5.13015 * 8 6 2 32 32 H 1.08996 * 109.46960 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.46990 * 299.99744 * 10 9 8 34 34 H 1.08992 * 109.47013 * 59.99840 * 10 9 8 35 35 H 1.09005 * 109.47139 * 299.99775 * 11 9 8 36 36 H 1.08996 * 109.47123 * 179.97438 * 11 9 8 37 37 H 0.96998 * 120.00140 * 0.02562 * 12 11 9 38 38 H 1.08995 * 109.47460 * 299.99646 * 15 13 12 39 39 H 1.08995 * 109.47330 * 60.00352 * 15 13 12 40 40 H 0.97007 * 119.99813 * 180.02562 * 20 19 17 41 41 H 1.08999 * 115.55033 * 277.73429 * 25 9 8 42 42 H 1.08997 * 117.49919 * 359.97438 * 26 25 9 43 43 H 1.09000 * 117.49870 * 145.01934 * 26 25 9 44 44 H 1.08997 * 117.49752 * 214.97631 * 27 25 9 45 45 H 1.09003 * 117.50136 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2295 -2.1294 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1192 8 7 1.7069 -0.2499 2.4546 9 6 2.2851 -0.8713 3.6486 10 6 1.8586 -2.3391 3.7170 11 6 3.8111 -0.7863 3.5796 12 7 4.2195 0.6191 3.5140 13 6 5.5274 0.9387 3.4521 14 8 6.3660 0.0625 3.4456 15 6 5.9476 2.3846 3.3910 16 16 7.7533 2.4853 3.3152 17 6 7.9598 4.2340 3.2527 18 1 7.0949 4.8808 3.2670 19 6 9.2339 4.7804 3.1850 20 7 10.2880 3.9922 3.1680 21 14 9.4529 6.6344 3.1194 22 1 9.5669 7.1685 4.5004 23 1 10.6861 6.9605 2.3591 24 1 8.2798 7.2479 2.4467 25 6 1.7893 -0.1374 4.8962 26 6 1.2579 -0.9880 6.0517 27 6 0.2881 -0.1765 5.1891 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.0896 0.4930 2.5449 32 1 2.2884 -2.8012 4.6056 33 1 0.7714 -2.3996 3.7662 34 1 2.2117 -2.8618 2.8282 35 1 4.1643 -1.3091 2.6907 36 1 4.2413 -1.2483 4.4682 37 1 3.5488 1.3199 3.5196 38 1 5.5206 2.8499 2.5027 39 1 5.5915 2.9044 4.2803 40 1 11.1785 4.3740 3.1210 41 1 2.3280 0.7756 5.1497 42 1 1.2611 -2.0704 5.9229 43 1 1.4466 -0.6343 7.0653 44 1 -0.1608 0.7107 5.6356 45 1 -0.3465 -0.7247 4.4928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297574901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -20.051079 kcal Electronic energy + Delta-G solvation = -27160.863839 eV Core-core repulsion = 23305.837444 eV Total energy + Delta-G solvation = -3855.026395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16799 -39.20185 -38.47070 -36.78780 -35.08741 -34.26530 -33.29606 -32.42777 -30.86161 -29.32559 -26.31700 -25.80657 -25.43018 -24.18071 -22.78370 -21.47492 -20.34490 -19.76906 -18.45013 -17.95198 -17.61206 -16.53173 -16.38885 -16.15836 -15.80216 -15.34557 -14.87587 -14.80583 -14.72014 -14.40872 -14.09403 -13.70543 -13.48957 -13.30071 -13.10635 -13.02235 -12.89782 -12.73782 -12.62942 -12.56869 -12.28144 -12.08894 -11.88969 -11.73950 -11.60296 -11.55648 -11.06731 -11.02597 -10.83606 -10.76936 -10.60783 -10.01845 -9.82443 -9.55621 -9.35298 -9.06965 -8.81288 -8.22338 -6.49465 -6.21358 -3.91964 2.08448 2.15801 2.54609 2.83542 3.05720 3.13872 3.21860 3.27914 3.31898 3.38180 3.46969 3.72538 4.03696 4.16277 4.20366 4.29960 4.35367 4.51715 4.55831 4.61296 4.79310 4.94694 5.00483 5.11817 5.13672 5.16006 5.20460 5.37100 5.43452 5.44838 5.48707 5.52204 5.62512 5.69895 5.73112 5.87413 5.96943 5.98313 6.11520 6.13593 6.62133 7.00699 7.30418 7.59014 7.70787 7.75960 8.34856 8.64939 9.23685 10.86024 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.002853 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.746648 B = 9812.469882 C =11071.094424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 H 0.143 0.857 4 C 0.218 3.782 5 N -0.407 5.407 6 C 0.527 3.473 7 O -0.513 6.513 8 N -0.716 5.716 9 C 0.202 3.798 10 C -0.167 4.167 11 C 0.112 3.888 12 N -0.735 5.735 13 C 0.530 3.470 14 O -0.514 6.514 15 C -0.152 4.152 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.168 4.168 26 C -0.167 4.167 27 C -0.174 4.174 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.404 0.596 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.393 0.607 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.774 -6.285 2.763 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.037 4.037 3 H 0.160 0.840 4 C -0.101 4.101 5 N -0.082 5.082 6 C 0.311 3.689 7 O -0.388 6.388 8 N -0.369 5.369 9 C 0.116 3.884 10 C -0.225 4.225 11 C -0.013 4.013 12 N -0.390 5.390 13 C 0.316 3.684 14 O -0.388 6.388 15 C -0.303 4.303 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.186 4.186 26 C -0.204 4.204 27 C -0.211 4.211 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.239 0.761 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.227 0.773 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.048 -9.311 1.245 27.690 hybrid contribution -1.486 3.266 0.458 3.617 sum -27.535 -6.045 1.703 28.242 Atomic orbital electron populations 1.21797 0.89644 1.04224 1.04440 1.18859 0.98648 1.00485 0.85730 0.84000 1.28011 0.94005 0.94089 0.94037 1.81213 1.07219 1.07760 1.12006 1.19941 0.80450 0.84546 0.84001 1.90774 1.36626 1.25078 1.86298 1.45973 1.48725 1.37504 1.04714 1.20039 0.92361 0.93397 0.82571 1.22312 1.01528 0.94348 1.04333 1.21690 0.91824 0.83652 1.04095 1.45900 1.07513 1.07616 1.77947 1.20294 0.81659 0.91109 0.75384 1.90719 1.50689 1.50126 1.47247 1.23512 1.07434 0.94640 1.04673 1.85467 0.92339 1.09054 1.96423 1.22860 0.95252 0.91481 1.58838 0.90975 1.24992 0.94882 0.99148 0.94567 1.70021 0.98347 1.35130 1.46714 0.86174 0.77876 0.83188 0.78285 1.20279 1.20758 1.19708 1.22518 0.97252 1.02472 0.96399 1.23142 1.02733 0.99072 0.95464 1.23000 0.91517 1.03015 1.03614 0.91035 0.89946 0.90170 0.76094 0.90943 0.91914 0.89740 0.89289 0.90679 0.77274 0.89427 0.89356 0.92175 0.86655 0.87715 0.88342 0.88425 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.34 9.04 37.15 0.34 0.00 16 2 C -0.01 -0.07 3.11 -94.56 -0.29 -0.37 16 3 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.22 2.35 13.88 -20.76 -0.29 2.06 16 5 N -0.41 -5.81 18.54 42.15 0.78 -5.03 16 6 C 0.53 4.36 6.54 -10.99 -0.07 4.29 16 7 O -0.51 -6.78 12.27 5.56 0.07 -6.72 16 8 N -0.72 -3.86 4.65 -47.61 -0.22 -4.08 16 9 C 0.20 1.46 0.54 -131.82 -0.07 1.39 16 10 C -0.17 -1.23 7.06 37.16 0.26 -0.97 16 11 C 0.11 1.33 4.36 -4.04 -0.02 1.31 16 12 N -0.73 -9.21 4.98 -60.29 -0.30 -9.51 16 13 C 0.53 9.80 7.85 -10.98 -0.09 9.72 16 14 O -0.51 -11.97 15.86 5.56 0.09 -11.88 16 15 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.17 -0.92 4.86 -90.61 -0.44 -1.36 16 26 C -0.17 -0.85 9.63 -26.69 -0.26 -1.11 16 27 C -0.17 -0.65 9.72 -26.69 -0.26 -0.91 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 -0.02 7.46 -51.93 -0.39 -0.41 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.40 0.83 7.66 -40.82 -0.31 0.51 16 32 H 0.07 0.50 6.81 -51.93 -0.35 0.15 16 33 H 0.06 0.36 7.00 -51.93 -0.36 0.00 16 34 H 0.08 0.85 6.13 -51.93 -0.32 0.53 16 35 H 0.09 1.36 6.22 -51.93 -0.32 1.04 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.39 3.57 7.43 -40.82 -0.30 3.26 16 38 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.12 0.70 7.09 -51.93 -0.37 0.33 16 42 H 0.10 0.52 5.87 -51.93 -0.31 0.22 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.10 0.30 7.39 -51.93 -0.38 -0.08 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -39.68 389.02 -7.34 -47.02 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.34 Total: -0.97 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.77 Total: -1.62 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.99 Total: -44.12 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.16 Total: -18.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.68 -7.34 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.967 kcal (2) G-P(sol) polarization free energy of solvation -39.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds