Wall clock time and date at job start Sat Apr 11 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47066 * 2 1 4 4 C 1.47205 * 109.47066 * 239.99943 * 2 1 3 5 5 N 2.60800 * 109.47248 * 239.99893 * 2 1 3 6 6 C 1.50698 * 109.47464 * 119.99953 * 2 1 3 7 7 O 1.21281 * 120.00304 * 119.99987 * 6 2 1 8 8 N 1.34778 * 119.99931 * 299.99674 * 6 2 1 9 9 C 1.46501 * 119.99975 * 185.11956 * 8 6 2 10 10 C 1.52998 * 109.47392 * 298.25675 * 9 8 6 11 11 C 1.52996 * 109.47137 * 58.25875 * 9 8 6 12 12 N 1.46507 * 109.47080 * 59.99465 * 11 9 8 13 13 C 1.34783 * 119.99734 * 179.72502 * 12 11 9 14 14 O 1.21282 * 119.99960 * 0.27698 * 13 12 11 15 15 C 1.50697 * 119.99509 * 180.27833 * 13 12 11 16 16 S 1.81003 * 109.46894 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00247 * 179.97438 * 16 15 13 18 18 H 1.08009 * 119.99714 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00323 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99703 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00256 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47141 * 90.00019 * 21 19 17 23 23 H 1.48496 * 109.46950 * 210.00237 * 21 19 17 24 24 H 1.48504 * 109.46828 * 330.00325 * 21 19 17 25 25 C 1.53004 * 109.46627 * 178.25469 * 9 8 6 26 26 C 1.53008 * 117.49552 * 132.07387 * 25 9 8 27 27 C 1.53000 * 117.50009 * 63.41592 * 25 9 8 28 28 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47193 * 300.00019 * 1 2 3 30 30 H 1.08995 * 109.47530 * 60.00158 * 1 2 3 31 31 H 0.97004 * 119.99652 * 5.13015 * 8 6 2 32 32 H 1.08996 * 109.46960 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.46990 * 299.99744 * 10 9 8 34 34 H 1.08992 * 109.47013 * 59.99840 * 10 9 8 35 35 H 1.09005 * 109.47139 * 299.99775 * 11 9 8 36 36 H 1.08996 * 109.47123 * 179.97438 * 11 9 8 37 37 H 0.96998 * 120.00140 * 0.02562 * 12 11 9 38 38 H 1.08995 * 109.47460 * 299.99646 * 15 13 12 39 39 H 1.08995 * 109.47330 * 60.00352 * 15 13 12 40 40 H 0.97007 * 119.99813 * 180.02562 * 20 19 17 41 41 H 1.08999 * 115.55033 * 277.73429 * 25 9 8 42 42 H 1.08997 * 117.49919 * 359.97438 * 26 25 9 43 43 H 1.09000 * 117.49870 * 145.01934 * 26 25 9 44 44 H 1.08997 * 117.49752 * 214.97631 * 27 25 9 45 45 H 1.09003 * 117.50136 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2295 -2.1294 6 6 2.0324 -0.7104 1.2304 7 8 2.7296 -1.6964 1.1192 8 7 1.7069 -0.2499 2.4546 9 6 2.2851 -0.8713 3.6486 10 6 1.8586 -2.3391 3.7170 11 6 3.8111 -0.7863 3.5796 12 7 4.2195 0.6191 3.5140 13 6 5.5274 0.9387 3.4521 14 8 6.3660 0.0625 3.4456 15 6 5.9476 2.3846 3.3910 16 16 7.7533 2.4853 3.3152 17 6 7.9598 4.2340 3.2527 18 1 7.0949 4.8808 3.2670 19 6 9.2339 4.7804 3.1850 20 7 10.2880 3.9922 3.1680 21 14 9.4529 6.6344 3.1194 22 1 9.5669 7.1685 4.5004 23 1 10.6861 6.9605 2.3591 24 1 8.2798 7.2479 2.4467 25 6 1.7893 -0.1374 4.8962 26 6 1.2579 -0.9880 6.0517 27 6 0.2881 -0.1765 5.1891 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.0896 0.4930 2.5449 32 1 2.2884 -2.8012 4.6056 33 1 0.7714 -2.3996 3.7662 34 1 2.2117 -2.8618 2.8282 35 1 4.1643 -1.3091 2.6907 36 1 4.2413 -1.2483 4.4682 37 1 3.5488 1.3199 3.5196 38 1 5.5206 2.8499 2.5027 39 1 5.5915 2.9044 4.2803 40 1 11.1785 4.3740 3.1210 41 1 2.3280 0.7756 5.1497 42 1 1.2611 -2.0704 5.9229 43 1 1.4466 -0.6343 7.0653 44 1 -0.1608 0.7107 5.6356 45 1 -0.3465 -0.7247 4.4928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297574901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:25 Heat of formation + Delta-G solvation = -50.339520 kcal Electronic energy + Delta-G solvation = -27162.177244 eV Core-core repulsion = 23305.837444 eV Total energy + Delta-G solvation = -3856.339800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88262 -40.43385 -39.27216 -37.63317 -35.94639 -35.08755 -34.57137 -34.09349 -31.75335 -30.59443 -27.74977 -27.06705 -26.20252 -24.90826 -23.10818 -22.07942 -21.77071 -20.46563 -19.83382 -19.04229 -18.31516 -17.85072 -17.42856 -16.90345 -16.86721 -16.56056 -16.42723 -15.96734 -15.63641 -15.51094 -15.04919 -14.77106 -14.54999 -14.28058 -14.21638 -14.03895 -13.87857 -13.73967 -13.35211 -13.22522 -13.15149 -13.13636 -12.87482 -12.77839 -12.70057 -12.55414 -12.35236 -12.14276 -11.99270 -11.72223 -11.23088 -11.12925 -11.05467 -10.98188 -10.71065 -10.24735 -10.19591 -10.05134 -8.66101 -8.33129 -6.11673 1.27785 1.38332 1.44001 1.48617 1.51050 1.58694 1.63616 1.73196 2.15485 2.28438 2.34413 2.79947 3.01072 3.01305 3.33983 3.50875 3.57717 3.77667 3.97489 3.99450 4.06127 4.16557 4.21282 4.29029 4.31975 4.51210 4.53142 4.55430 4.76564 4.81485 4.86850 4.90467 4.91830 5.00021 5.13281 5.24367 5.31908 5.36797 5.41209 5.43064 5.44450 5.49668 6.21109 6.42178 6.51951 6.59675 7.08039 7.21286 7.27732 8.76130 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011181 B = 0.002853 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.746648 B = 9812.469882 C =11071.094424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.009 4.009 3 H 0.179 0.821 4 C 0.238 3.762 5 N -0.482 5.482 6 C 0.524 3.476 7 O -0.569 6.569 8 N -0.695 5.695 9 C 0.215 3.785 10 C -0.163 4.163 11 C 0.114 3.886 12 N -0.701 5.701 13 C 0.529 3.471 14 O -0.571 6.571 15 C -0.124 4.124 16 S -0.161 6.161 17 C -0.543 4.543 18 H 0.087 0.913 19 C 0.011 3.989 20 N -0.914 5.914 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.255 1.255 25 C -0.175 4.175 26 C -0.180 4.180 27 C -0.147 4.147 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.426 0.574 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.947 -3.164 3.938 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 H 0.196 0.804 4 C -0.080 4.080 5 N -0.158 5.158 6 C 0.309 3.691 7 O -0.448 6.448 8 N -0.349 5.349 9 C 0.129 3.871 10 C -0.222 4.222 11 C -0.012 4.012 12 N -0.355 5.355 13 C 0.315 3.685 14 O -0.449 6.449 15 C -0.276 4.276 16 S 0.066 5.934 17 C -0.690 4.690 18 H 0.105 0.895 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.822 3.178 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.194 4.194 26 C -0.218 4.218 27 C -0.183 4.183 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.266 0.734 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.131 0.869 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -30.336 -6.138 2.439 31.047 hybrid contribution -0.295 2.192 0.153 2.217 sum -30.631 -3.947 2.593 30.993 Atomic orbital electron populations 1.21897 0.86335 1.04386 1.06937 1.19272 1.01032 1.00879 0.82099 0.80397 1.29059 0.92133 0.92647 0.94151 1.81214 1.09742 1.10113 1.14703 1.20418 0.79548 0.83880 0.85292 1.90788 1.39186 1.27685 1.87114 1.45766 1.48275 1.37569 1.03282 1.19785 0.88966 0.94121 0.84236 1.22271 1.02942 0.93994 1.02948 1.21703 0.95390 0.82228 1.01830 1.45530 1.05872 1.08858 1.75283 1.20185 0.83019 0.90092 0.75183 1.90711 1.52694 1.51289 1.50248 1.23335 1.01218 0.96023 1.06992 1.85740 1.00399 1.10440 1.96807 1.23208 0.96056 0.91278 1.58508 0.89524 1.26167 0.94413 1.04973 0.93802 1.70204 0.98984 1.37759 1.48091 0.84932 0.78229 0.75945 0.78738 1.19225 1.20674 1.17827 1.22359 0.99270 1.02315 0.95425 1.23226 1.03849 0.99232 0.95455 1.23098 0.89927 1.02942 1.02367 0.92096 0.86084 0.89026 0.73396 0.90856 0.89452 0.92723 0.92831 0.91959 0.74610 0.87017 0.86687 0.92107 0.86701 0.87857 0.88397 0.86923 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 9.04 71.98 0.65 0.54 16 2 C -0.01 -0.08 3.11 -13.35 -0.04 -0.12 16 3 H 0.18 0.36 8.14 -2.38 -0.02 0.34 16 4 C 0.24 5.10 13.88 89.44 1.24 6.34 16 5 N -0.48 -14.37 18.54 20.01 0.37 -14.00 16 6 C 0.52 7.80 6.54 87.66 0.57 8.37 16 7 O -0.57 -15.48 12.27 -3.03 -0.04 -15.52 16 8 N -0.69 -5.26 4.65 -422.92 -1.97 -7.23 16 9 C 0.22 2.69 0.54 3.60 0.00 2.69 16 10 C -0.16 -2.24 7.06 71.98 0.51 -1.73 16 11 C 0.11 2.69 4.36 86.38 0.38 3.06 16 12 N -0.70 -16.53 4.98 -463.04 -2.31 -18.84 16 13 C 0.53 19.48 7.85 87.66 0.69 20.17 16 14 O -0.57 -27.72 15.86 -3.04 -0.05 -27.77 16 15 C -0.12 -4.75 6.16 71.24 0.44 -4.31 16 16 S -0.16 -8.97 20.57 -56.49 -1.16 -10.13 16 17 C -0.54 -30.60 9.50 67.95 0.65 -29.96 16 18 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.62 5.49 84.86 0.47 1.08 16 20 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 21 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 C -0.17 -1.32 4.86 -10.79 -0.05 -1.38 16 26 C -0.18 -1.31 9.63 30.62 0.29 -1.02 16 27 C -0.15 -0.38 9.72 30.62 0.30 -0.09 16 28 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.12 -0.80 7.46 -2.39 -0.02 -0.82 16 30 H 0.09 -0.05 8.14 -2.39 -0.02 -0.06 16 31 H 0.43 -0.55 7.66 -92.71 -0.71 -1.26 16 32 H 0.07 0.98 6.81 -2.39 -0.02 0.96 16 33 H 0.09 0.76 7.00 -2.39 -0.02 0.74 16 34 H 0.05 1.13 6.13 -2.39 -0.01 1.12 16 35 H 0.05 1.73 6.22 -2.38 -0.01 1.72 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.42 6.07 7.43 -92.71 -0.69 5.38 16 38 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 39 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.12 0.95 7.09 -2.39 -0.02 0.93 16 42 H 0.10 0.79 5.87 -2.39 -0.01 0.78 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.11 0.06 7.39 -2.39 -0.02 0.05 16 Total: -1.00 -95.66 389.02 2.89 -92.77 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.36 Total: 8.22 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.09 Total: 3.65 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -3.62 Total: -96.34 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.09 Total: -43.29 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -95.66 2.89 -92.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297574901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.431 kcal (2) G-P(sol) polarization free energy of solvation -95.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds