Wall clock time and date at job start Sat Apr 11 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42909 * 113.99836 * 2 1 4 4 C 1.52998 * 109.46477 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47741 * 55.00285 * 4 3 2 6 6 C 1.52994 * 109.47623 * 294.99675 * 4 3 2 7 7 C 1.50704 * 109.46532 * 174.99915 * 4 3 2 8 8 O 1.21279 * 120.00055 * 34.84377 * 7 4 3 9 9 N 1.34785 * 119.99761 * 214.83822 * 7 4 3 10 10 C 1.47069 * 120.80485 * 174.71825 * 9 7 4 11 11 C 1.53293 * 108.60660 * 115.26032 * 10 9 7 12 12 C 1.50989 * 108.96201 * 45.02024 * 11 10 9 13 13 S 1.75965 * 126.03044 * 162.52579 * 12 11 10 14 14 C 1.70895 * 90.30634 * 179.63854 * 13 12 11 15 15 C 1.50702 * 124.92388 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47155 * 270.00018 * 15 14 13 17 17 C 1.36939 * 119.99824 * 179.72083 * 16 15 14 18 18 H 1.07998 * 119.99946 * 0.28323 * 17 16 15 19 19 C 1.38810 * 120.00126 * 180.27512 * 17 16 15 20 20 N 1.31621 * 119.99638 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47431 * 89.99722 * 21 19 17 23 23 H 1.48499 * 109.47086 * 210.00209 * 21 19 17 24 24 H 1.48500 * 109.46778 * 329.99496 * 21 19 17 25 25 N 1.28676 * 110.15558 * 0.33031 * 14 13 12 26 26 C 1.32445 * 117.81707 * 359.56015 * 25 14 13 27 27 C 1.47028 * 120.80756 * 354.74135 * 9 7 4 28 28 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47036 * 300.00777 * 1 2 3 30 30 H 1.09000 * 109.47001 * 59.99887 * 1 2 3 31 31 H 1.08997 * 109.46744 * 60.00049 * 3 2 1 32 32 H 1.08997 * 109.46946 * 299.99353 * 3 2 1 33 33 H 1.09005 * 109.47366 * 305.01100 * 6 4 3 34 34 H 1.09004 * 109.46758 * 65.00531 * 6 4 3 35 35 H 1.08993 * 109.47680 * 185.00580 * 6 4 3 36 36 H 1.08998 * 109.61228 * 235.00327 * 10 9 7 37 37 H 1.09000 * 109.61086 * 355.52876 * 10 9 7 38 38 H 1.08998 * 109.56731 * 285.17666 * 11 10 9 39 39 H 1.08997 * 109.55415 * 164.86233 * 11 10 9 40 40 H 1.09004 * 109.47453 * 149.99789 * 15 14 13 41 41 H 1.08998 * 109.47214 * 29.99972 * 15 14 13 42 42 H 0.96996 * 120.00087 * 0.02562 * 16 15 14 43 43 H 0.97002 * 120.00047 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.81981 * 105.67258 * 27 9 7 45 45 H 1.09006 * 109.81721 * 344.77318 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5682 -0.8409 6 6 3.9952 0.5369 1.3082 7 6 4.1480 2.5560 -0.1232 8 8 3.6108 3.5095 0.3993 9 7 5.2929 2.7226 -0.8146 10 6 5.8449 4.0662 -1.0449 11 6 7.1902 4.1736 -0.3178 12 6 7.9927 2.9225 -0.5835 13 16 9.7265 2.7356 -0.3482 14 6 9.6323 1.1126 -0.8750 15 6 10.8025 0.1680 -0.9732 16 7 11.4030 0.2713 -2.3054 17 6 12.4920 -0.4942 -2.6268 18 1 12.9053 -1.1774 -1.8996 19 6 13.0645 -0.3923 -3.8872 20 7 12.5609 0.4406 -4.7733 21 14 14.5496 -1.4370 -4.3258 22 1 14.0943 -2.7243 -4.9093 23 1 15.3885 -0.7142 -5.3152 24 1 15.3467 -1.7028 -3.1014 25 7 8.4184 0.8158 -1.1818 26 6 7.4970 1.7564 -1.0386 27 6 6.0201 1.5657 -1.3574 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.6038 1.1048 2.1523 34 1 3.6248 -0.4871 1.3563 35 1 5.0844 0.5315 1.3478 36 1 5.9929 4.2228 -2.1134 37 1 5.1571 4.8162 -0.6544 38 1 7.0188 4.2762 0.7538 39 1 7.7358 5.0422 -0.6863 40 1 10.4599 -0.8534 -0.8072 41 1 11.5446 0.4294 -0.2189 42 1 11.0319 0.8851 -2.9584 43 1 12.9612 0.5121 -5.6539 44 1 5.8787 1.5136 -2.4369 45 1 5.6569 0.6494 -0.8918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316810372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:28 Heat of formation + Delta-G solvation = -20.990182 kcal Electronic energy + Delta-G solvation = -26801.115399 eV Core-core repulsion = 22946.048282 eV Total energy + Delta-G solvation = -3855.067117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88141 -39.51599 -38.16335 -36.58680 -34.69717 -34.22477 -32.34336 -31.56786 -29.83142 -27.75165 -26.85251 -26.50533 -25.89178 -24.09745 -23.52134 -22.28998 -21.60533 -19.56482 -18.38955 -18.14072 -17.42397 -17.09416 -16.63926 -16.28758 -16.01785 -15.75284 -15.18669 -15.00213 -14.76932 -14.34691 -14.20387 -13.87653 -13.73916 -13.56951 -13.32713 -13.05782 -12.80193 -12.71444 -12.61204 -12.40657 -12.25600 -11.87879 -11.82543 -11.66035 -11.49877 -11.21877 -11.08083 -10.97864 -10.85471 -10.17161 -10.09729 -9.96424 -9.85135 -9.35169 -9.13384 -8.96084 -8.94246 -8.46089 -7.05095 -5.82874 -3.14452 0.86245 1.51094 1.96935 2.24652 2.47163 2.88899 3.41268 3.43820 3.46206 3.47870 4.04342 4.21484 4.44886 4.55082 4.57306 4.65744 4.71685 4.89470 4.97269 4.99052 5.00423 5.01465 5.18687 5.23656 5.25404 5.31139 5.32351 5.34321 5.48136 5.50028 5.51943 5.61788 5.66458 5.76390 5.92358 5.96793 6.06853 6.15433 6.39240 6.44677 6.75379 7.00997 7.62692 7.78002 7.98054 8.32750 9.45230 9.96044 10.32431 11.39405 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.002388 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.731435 B =11724.362248 C =12674.689782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.080 3.920 4 C -0.113 4.113 5 H 0.104 0.896 6 C -0.137 4.137 7 C 0.533 3.467 8 O -0.539 6.539 9 N -0.609 5.609 10 C 0.115 3.885 11 C -0.052 4.052 12 C -0.238 4.238 13 S 0.137 5.863 14 C 0.076 3.924 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.463 5.463 26 C 0.047 3.953 27 C 0.189 3.811 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.094 0.906 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.041 5.773 11.104 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.003 3.997 4 C -0.134 4.134 5 H 0.122 0.878 6 C -0.195 4.195 7 C 0.321 3.679 8 O -0.416 6.416 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.093 4.093 12 C -0.359 4.359 13 S 0.395 5.605 14 C -0.203 4.203 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.375 4.375 18 H 0.093 0.907 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.177 5.177 26 C -0.087 4.087 27 C 0.064 3.936 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.306 6.109 11.557 24.150 hybrid contribution -0.139 -0.315 -0.911 0.974 sum -20.445 5.794 10.646 23.767 Atomic orbital electron populations 1.22745 0.80629 1.02860 1.00123 1.87835 1.19932 1.27535 1.95507 1.22244 0.91343 0.84644 1.01452 1.21264 0.95294 0.94386 1.02458 0.87826 1.21684 1.01532 1.01674 0.94603 1.20359 0.80026 0.90628 0.76915 1.90688 1.62231 1.42506 1.46125 1.48070 1.23800 1.07747 1.54652 1.21684 0.94203 0.84245 1.00714 1.20454 0.93993 0.93211 1.01637 1.25838 0.97090 1.00846 1.12167 1.83964 1.03238 1.12064 1.61213 1.27311 0.96105 0.97014 0.99870 1.19344 0.86538 0.93897 0.90861 1.42261 1.35021 1.50328 1.09294 1.19198 1.04285 1.16631 0.97430 0.90731 1.24782 0.99810 0.99703 0.96336 1.69679 1.42778 1.39369 1.05916 0.86122 0.82131 0.79572 0.77922 1.21555 1.21714 1.20602 1.65775 0.99993 1.34000 1.17924 1.20789 0.96306 0.88707 1.02881 1.20317 0.84665 0.88726 0.99882 0.89427 0.93967 0.93998 0.91903 0.92951 0.91882 0.90341 0.91995 0.90182 0.87914 0.89905 0.89157 0.92825 0.93962 0.77947 0.93351 0.88832 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.67 10.33 -35.23 -0.36 -4.03 16 3 C 0.08 0.74 4.89 37.16 0.18 0.92 16 4 C -0.11 -1.07 2.14 -91.77 -0.20 -1.26 16 5 H 0.10 0.89 6.37 -51.93 -0.33 0.56 16 6 C -0.14 -1.25 8.87 37.15 0.33 -0.92 16 7 C 0.53 6.01 6.70 -10.98 -0.07 5.93 16 8 O -0.54 -7.43 15.82 5.56 0.09 -7.35 16 9 N -0.61 -6.59 2.92 -173.05 -0.50 -7.10 16 10 C 0.12 1.14 6.40 -3.58 -0.02 1.12 16 11 C -0.05 -0.55 6.44 -27.59 -0.18 -0.72 16 12 C -0.24 -3.26 6.43 -35.44 -0.23 -3.48 16 13 S 0.14 2.07 23.17 -107.50 -2.49 -0.42 16 14 C 0.08 1.39 6.75 -13.60 -0.09 1.29 16 15 C 0.22 4.56 6.84 -5.19 -0.04 4.53 16 16 N -0.72 -18.34 5.59 -61.08 -0.34 -18.68 16 17 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 N -0.46 -8.24 10.51 -7.28 -0.08 -8.32 16 26 C 0.05 0.69 6.87 -82.81 -0.57 0.12 16 27 C 0.19 2.15 6.34 -4.11 -0.03 2.12 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 35 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.99 7.04 -51.93 -0.37 0.63 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.39 10.54 7.66 -40.82 -0.31 10.22 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.11 1.09 5.65 -51.93 -0.29 0.80 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -32.95 383.72 -8.99 -41.94 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.74 Total: 4.63 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.04 Total: 3.72 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.20 Total: -61.33 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.28 Total: -11.38 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.49 Total: -0.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.95 -8.99 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316810372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.950 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds