Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42909 * 113.99836 * 2 1 4 4 C 1.52998 * 109.46477 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47741 * 55.00285 * 4 3 2 6 6 C 1.52994 * 109.47623 * 294.99675 * 4 3 2 7 7 C 1.50704 * 109.46532 * 174.99915 * 4 3 2 8 8 O 1.21279 * 120.00055 * 34.84377 * 7 4 3 9 9 N 1.34785 * 119.99761 * 214.83822 * 7 4 3 10 10 C 1.47069 * 120.80485 * 174.71825 * 9 7 4 11 11 C 1.53293 * 108.60660 * 115.26032 * 10 9 7 12 12 C 1.50989 * 108.96201 * 45.02024 * 11 10 9 13 13 S 1.75965 * 126.03044 * 162.52579 * 12 11 10 14 14 C 1.70895 * 90.30634 * 179.63854 * 13 12 11 15 15 C 1.50702 * 124.92388 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47155 * 270.00018 * 15 14 13 17 17 C 1.36939 * 119.99824 * 179.72083 * 16 15 14 18 18 H 1.07998 * 119.99946 * 0.28323 * 17 16 15 19 19 C 1.38810 * 120.00126 * 180.27512 * 17 16 15 20 20 N 1.31621 * 119.99638 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00269 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47431 * 89.99722 * 21 19 17 23 23 H 1.48499 * 109.47086 * 210.00209 * 21 19 17 24 24 H 1.48500 * 109.46778 * 329.99496 * 21 19 17 25 25 N 1.28676 * 110.15558 * 0.33031 * 14 13 12 26 26 C 1.32445 * 117.81707 * 359.56015 * 25 14 13 27 27 C 1.47028 * 120.80756 * 354.74135 * 9 7 4 28 28 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47036 * 300.00777 * 1 2 3 30 30 H 1.09000 * 109.47001 * 59.99887 * 1 2 3 31 31 H 1.08997 * 109.46744 * 60.00049 * 3 2 1 32 32 H 1.08997 * 109.46946 * 299.99353 * 3 2 1 33 33 H 1.09005 * 109.47366 * 305.01100 * 6 4 3 34 34 H 1.09004 * 109.46758 * 65.00531 * 6 4 3 35 35 H 1.08993 * 109.47680 * 185.00580 * 6 4 3 36 36 H 1.08998 * 109.61228 * 235.00327 * 10 9 7 37 37 H 1.09000 * 109.61086 * 355.52876 * 10 9 7 38 38 H 1.08998 * 109.56731 * 285.17666 * 11 10 9 39 39 H 1.08997 * 109.55415 * 164.86233 * 11 10 9 40 40 H 1.09004 * 109.47453 * 149.99789 * 15 14 13 41 41 H 1.08998 * 109.47214 * 29.99972 * 15 14 13 42 42 H 0.96996 * 120.00087 * 0.02562 * 16 15 14 43 43 H 0.97002 * 120.00047 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.81981 * 105.67258 * 27 9 7 45 45 H 1.09006 * 109.81721 * 344.77318 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8515 0.5682 -0.8409 6 6 3.9952 0.5369 1.3082 7 6 4.1480 2.5560 -0.1232 8 8 3.6108 3.5095 0.3993 9 7 5.2929 2.7226 -0.8146 10 6 5.8449 4.0662 -1.0449 11 6 7.1902 4.1736 -0.3178 12 6 7.9927 2.9225 -0.5835 13 16 9.7265 2.7356 -0.3482 14 6 9.6323 1.1126 -0.8750 15 6 10.8025 0.1680 -0.9732 16 7 11.4030 0.2713 -2.3054 17 6 12.4920 -0.4942 -2.6268 18 1 12.9053 -1.1774 -1.8996 19 6 13.0645 -0.3923 -3.8872 20 7 12.5609 0.4406 -4.7733 21 14 14.5496 -1.4370 -4.3258 22 1 14.0943 -2.7243 -4.9093 23 1 15.3885 -0.7142 -5.3152 24 1 15.3467 -1.7028 -3.1014 25 7 8.4184 0.8158 -1.1818 26 6 7.4970 1.7564 -1.0386 27 6 6.0201 1.5657 -1.3574 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.6038 1.1048 2.1523 34 1 3.6248 -0.4871 1.3563 35 1 5.0844 0.5315 1.3478 36 1 5.9929 4.2228 -2.1134 37 1 5.1571 4.8162 -0.6544 38 1 7.0188 4.2762 0.7538 39 1 7.7358 5.0422 -0.6863 40 1 10.4599 -0.8534 -0.8072 41 1 11.5446 0.4294 -0.2189 42 1 11.0319 0.8851 -2.9584 43 1 12.9612 0.5121 -5.6539 44 1 5.8787 1.5136 -2.4369 45 1 5.6569 0.6494 -0.8918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316810372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -43.302817 kcal Electronic energy + Delta-G solvation = -26802.082948 eV Core-core repulsion = 22946.048282 eV Total energy + Delta-G solvation = -3856.034666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83463 -40.61685 -38.87002 -37.65763 -36.46793 -35.02056 -33.65323 -33.00996 -31.17060 -28.44996 -28.35722 -27.40879 -26.59854 -25.41125 -24.89776 -23.55138 -22.71168 -20.58127 -19.61257 -19.25827 -18.97179 -18.21655 -17.49323 -17.01690 -16.88346 -16.69857 -16.65005 -16.13802 -15.77210 -15.70438 -15.27834 -15.05053 -14.95829 -14.82951 -14.50326 -14.07643 -13.93036 -13.81488 -13.63270 -13.46038 -13.18268 -13.07189 -12.96909 -12.77353 -12.51497 -12.43696 -12.28450 -12.15323 -12.12228 -11.90363 -11.87138 -11.03525 -10.95491 -10.65243 -10.60561 -10.23558 -9.93814 -9.63899 -9.09824 -7.96994 -5.29117 -0.36874 0.31579 0.74204 1.36349 1.49332 1.51670 1.59463 1.61557 1.68387 2.56025 2.73199 2.96773 3.37644 3.40467 3.63292 3.75884 3.79762 3.85412 3.91880 4.06913 4.13005 4.21645 4.25652 4.32033 4.44295 4.47310 4.49591 4.55363 4.60925 4.63445 4.69961 4.77234 4.78154 4.83004 4.85463 4.86930 4.92023 5.13851 5.19764 5.23593 5.47847 6.11959 6.15108 6.21292 6.72878 6.91743 7.29122 7.95016 8.22200 9.26304 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.002388 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.731435 B =11724.362248 C =12674.689782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.084 3.916 4 C -0.111 4.111 5 H 0.114 0.886 6 C -0.132 4.132 7 C 0.535 3.465 8 O -0.565 6.565 9 N -0.607 5.607 10 C 0.114 3.886 11 C -0.051 4.051 12 C -0.224 4.224 13 S 0.163 5.837 14 C 0.037 3.963 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.248 4.248 18 H 0.085 0.915 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.980 3.020 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.265 1.265 25 N -0.479 5.479 26 C 0.028 3.972 27 C 0.195 3.805 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.770 6.016 11.783 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.007 3.993 4 C -0.133 4.133 5 H 0.132 0.868 6 C -0.190 4.190 7 C 0.324 3.676 8 O -0.443 6.443 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.091 4.091 12 C -0.346 4.346 13 S 0.421 5.579 14 C -0.241 4.241 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.379 4.379 18 H 0.103 0.897 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.808 3.192 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.190 1.190 25 N -0.195 5.195 26 C -0.105 4.105 27 C 0.069 3.931 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.122 0.878 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.036 6.327 12.281 25.166 hybrid contribution -0.030 -0.323 -1.028 1.078 sum -21.065 6.004 11.253 24.625 Atomic orbital electron populations 1.22942 0.79219 1.04016 1.00852 1.87806 1.21545 1.27522 1.95608 1.22172 0.91107 0.84716 1.01311 1.21282 0.95552 0.93474 1.02953 0.86818 1.21634 1.01110 1.01884 0.94329 1.20604 0.79855 0.90903 0.76227 1.90678 1.62956 1.43480 1.47232 1.48105 1.23611 1.07991 1.54277 1.21800 0.93806 0.83933 1.01454 1.20618 0.93944 0.92263 1.02275 1.26332 0.96481 1.01721 1.10064 1.83762 1.04380 1.09548 1.60192 1.26847 0.95786 0.98540 1.02886 1.19300 0.87680 0.94578 0.88680 1.42422 1.34884 1.49756 1.10909 1.19646 1.04509 1.16160 0.97582 0.89731 1.25643 1.02984 1.01396 0.96511 1.69841 1.44482 1.41457 1.06127 0.85055 0.78751 0.77592 0.77811 1.21437 1.22217 1.18958 1.65728 1.00406 1.35654 1.17682 1.21223 0.97323 0.88539 1.03463 1.20377 0.82725 0.89344 1.00630 0.88128 0.93284 0.93237 0.92469 0.92689 0.92247 0.89788 0.92484 0.88993 0.87364 0.89204 0.87027 0.93287 0.92580 0.79508 0.93897 0.87770 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.11 10.33 -148.98 -1.54 -8.64 16 3 C 0.08 1.45 4.89 71.98 0.35 1.80 16 4 C -0.11 -1.95 2.14 -11.54 -0.02 -1.98 16 5 H 0.11 1.75 6.37 -2.39 -0.02 1.74 16 6 C -0.13 -2.26 8.87 71.98 0.64 -1.62 16 7 C 0.53 11.25 6.70 87.66 0.59 11.84 16 8 O -0.56 -14.85 15.82 -3.03 -0.05 -14.90 16 9 N -0.61 -11.98 2.92 -819.78 -2.39 -14.37 16 10 C 0.11 1.98 6.40 86.37 0.55 2.53 16 11 C -0.05 -0.92 6.44 30.04 0.19 -0.73 16 12 C -0.22 -5.75 6.43 24.95 0.16 -5.59 16 13 S 0.16 4.76 23.17 -56.49 -1.31 3.45 16 14 C 0.04 1.36 6.75 88.57 0.60 1.96 16 15 C 0.23 9.29 6.84 85.63 0.59 9.88 16 16 N -0.74 -37.78 5.59 -347.17 -1.94 -39.73 16 17 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 20 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 21 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 N -0.48 -16.93 10.51 -176.96 -1.86 -18.79 16 26 C 0.03 0.78 6.87 42.15 0.29 1.07 16 27 C 0.19 4.09 6.34 86.05 0.55 4.64 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 1.04 8.02 -2.39 -0.02 1.02 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 35 H 0.06 1.02 7.90 -2.39 -0.02 1.00 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.84 7.04 -2.39 -0.02 1.82 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.37 20.82 7.66 -92.71 -0.71 20.11 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 44 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.12 2.21 5.65 -2.38 -0.01 2.19 16 Total: -1.00 -70.44 383.72 0.55 -69.89 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.30 Total: 25.68 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 7.03 Total: 8.83 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -5.91 Total: -131.87 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -1.59 Total: -23.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.31 Total: 3.45 kcal Total: -70.44 0.55 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316810372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.582 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds