Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00101 * 2 1 4 4 C 1.52998 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47207 * 304.99627 * 4 3 2 6 6 C 1.53004 * 109.47460 * 64.99721 * 4 3 2 7 7 C 1.50704 * 109.46896 * 184.99419 * 4 3 2 8 8 O 1.21277 * 120.00230 * 0.02562 * 7 4 3 9 9 N 1.34782 * 120.00002 * 179.97438 * 7 4 3 10 10 C 1.47070 * 120.80306 * 180.02562 * 9 7 4 11 11 C 1.53296 * 108.59454 * 115.25203 * 10 9 7 12 12 C 1.50984 * 108.95920 * 45.03996 * 11 10 9 13 13 S 1.75963 * 126.02545 * 162.48434 * 12 11 10 14 14 C 1.70903 * 90.30817 * 179.75774 * 13 12 11 15 15 C 1.50700 * 124.92495 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.99280 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 N 1.28679 * 110.14462 * 0.28258 * 14 13 12 26 26 C 1.32435 * 117.82709 * 359.58147 * 25 14 13 27 27 C 1.47036 * 120.80202 * 0.02724 * 9 7 4 28 28 H 1.08998 * 109.47465 * 300.00579 * 1 2 3 29 29 H 1.09007 * 109.46803 * 60.00778 * 1 2 3 30 30 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47381 * 59.99330 * 3 2 1 32 32 H 1.08998 * 109.46461 * 299.99363 * 3 2 1 33 33 H 1.08995 * 109.47320 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.47219 * 300.00126 * 6 4 3 35 35 H 1.09006 * 109.47026 * 59.99947 * 6 4 3 36 36 H 1.09001 * 109.61453 * 355.51838 * 10 9 7 37 37 H 1.08996 * 109.76070 * 235.07029 * 10 9 7 38 38 H 1.09004 * 109.55869 * 285.19733 * 11 10 9 39 39 H 1.08998 * 109.64062 * 164.93477 * 11 10 9 40 40 H 1.09004 * 109.47210 * 149.99638 * 15 14 13 41 41 H 1.08994 * 109.47121 * 29.99607 * 15 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 43 43 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 44 44 H 1.08993 * 109.81556 * 344.72638 * 27 9 7 45 45 H 1.08994 * 109.81624 * 105.57639 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9963 0.5363 -1.3064 7 6 4.1479 2.5560 0.1243 8 8 3.4348 3.5337 0.2046 9 7 5.4883 2.6959 0.1468 10 6 6.1048 4.0257 0.2675 11 6 6.8623 4.0943 1.5984 12 6 7.6592 2.8242 1.7753 13 16 9.0017 2.5913 2.8888 14 6 9.1712 0.9747 2.3609 15 6 10.1984 0.0012 2.8787 16 7 11.4149 0.0978 2.0681 17 6 12.4947 -0.6933 2.3570 18 1 12.4479 -1.3915 3.1796 19 6 13.6494 -0.5977 1.5925 20 7 14.6871 -1.3583 1.8698 21 14 13.7305 0.6106 0.1702 22 1 14.2431 1.9161 0.6583 23 1 14.6407 0.0818 -0.8772 24 1 12.3723 0.7945 -0.4013 25 7 8.2979 0.7110 1.4533 26 6 7.4576 1.6738 1.1056 27 6 6.3695 1.5228 0.0513 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 5.0829 0.4506 -1.3061 34 1 3.5533 -0.4555 -1.3959 35 1 3.6810 1.1524 -2.1485 36 1 5.3294 4.7916 0.2478 37 1 6.7989 4.1863 -0.5574 38 1 6.1512 4.1960 2.4183 39 1 7.5370 4.9504 1.5923 40 1 9.8014 -1.0122 2.8186 41 1 10.4333 0.2385 3.9162 42 1 11.4570 0.7252 1.3295 43 1 15.4939 -1.2917 1.3354 44 1 5.7970 0.6144 0.2388 45 1 6.8189 1.4780 -0.9407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316810397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -35.851413 kcal Electronic energy + Delta-G solvation = -26942.769119 eV Core-core repulsion = 23087.057570 eV Total energy + Delta-G solvation = -3855.711549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90226 -40.65590 -38.87406 -37.72414 -36.62216 -35.22497 -33.79820 -32.98798 -31.41460 -28.79166 -28.30622 -27.48058 -26.56360 -25.13403 -24.79639 -23.56343 -22.71068 -20.69490 -20.08542 -19.32423 -19.01826 -18.25539 -17.52685 -17.15569 -16.89118 -16.71939 -16.46233 -16.17304 -15.94507 -15.77744 -15.37393 -15.12223 -15.01613 -14.85015 -14.33521 -14.20684 -14.15250 -13.85364 -13.66882 -13.35230 -13.24370 -13.22107 -13.08208 -12.87405 -12.51131 -12.39291 -12.32468 -12.19535 -12.11989 -11.85695 -11.84420 -11.08939 -10.94740 -10.68351 -10.64312 -10.28068 -9.95072 -9.68578 -9.40904 -8.05709 -5.41811 -0.42312 0.26522 0.69603 1.35630 1.37982 1.39260 1.45041 1.58345 1.65482 2.44910 2.68279 2.92554 3.26050 3.38250 3.59027 3.68472 3.77552 3.80846 3.82015 3.88396 4.13238 4.19830 4.24063 4.29137 4.43793 4.45608 4.48752 4.52686 4.60934 4.63345 4.70610 4.76131 4.81155 4.83087 4.84648 4.85650 4.93368 5.10106 5.21949 5.28168 5.69550 6.10676 6.14788 6.15927 6.67946 6.91233 6.99305 7.71553 7.91483 9.14839 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.002569 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.100450 B =10895.980807 C =11511.486409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.086 3.914 4 C -0.110 4.110 5 H 0.111 0.889 6 C -0.148 4.148 7 C 0.534 3.466 8 O -0.567 6.567 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.051 4.051 12 C -0.221 4.221 13 S 0.168 5.832 14 C 0.031 3.969 15 C 0.231 3.769 16 N -0.749 5.749 17 C -0.236 4.236 18 H 0.067 0.933 19 C -0.055 4.055 20 N -0.976 5.976 21 Si 0.949 3.051 22 H -0.273 1.273 23 H -0.292 1.292 24 H -0.262 1.262 25 N -0.476 5.476 26 C 0.025 3.975 27 C 0.192 3.808 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.365 0.635 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.857 11.757 -4.848 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.009 3.991 4 C -0.131 4.131 5 H 0.129 0.871 6 C -0.205 4.205 7 C 0.324 3.676 8 O -0.446 6.446 9 N -0.338 5.338 10 C -0.010 4.010 11 C -0.092 4.092 12 C -0.343 4.343 13 S 0.426 5.574 14 C -0.247 4.247 15 C 0.102 3.898 16 N -0.396 5.396 17 C -0.367 4.367 18 H 0.085 0.915 19 C -0.247 4.247 20 N -0.626 5.626 21 Si 0.777 3.223 22 H -0.199 1.199 23 H -0.219 1.219 24 H -0.187 1.187 25 N -0.192 5.192 26 C -0.108 4.108 27 C 0.067 3.933 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.198 0.802 43 H 0.069 0.931 44 H 0.139 0.861 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.447 12.019 -4.127 30.246 hybrid contribution -0.009 0.251 -1.125 1.153 sum -27.456 12.270 -5.252 30.529 Atomic orbital electron populations 1.22930 0.79282 1.03973 1.00798 1.87792 1.21509 1.27702 1.95604 1.22123 0.91449 0.84369 1.01202 1.21192 0.95330 0.93564 1.03037 0.87107 1.21994 1.02716 1.01853 0.93984 1.20593 0.81370 0.91188 0.74472 1.90684 1.60723 1.41799 1.51435 1.48032 1.05195 1.08137 1.72425 1.21786 0.97934 0.84374 0.96916 1.20639 0.97531 0.91908 0.99109 1.26376 1.02625 1.01916 1.03397 1.83828 1.26874 1.08812 1.37908 1.26800 1.00348 0.98921 0.98653 1.19241 0.82026 0.94608 0.93956 1.42581 1.12191 1.47764 1.37083 1.18984 0.90938 1.14594 1.12158 0.91470 1.25411 0.95742 1.01435 1.02120 1.69854 1.05063 1.44111 1.43600 0.85497 0.77777 0.79327 0.79725 1.19874 1.21857 1.18746 1.65735 1.05117 1.34841 1.13462 1.21308 0.99369 0.88338 1.01820 1.20627 0.87797 0.89142 0.95711 0.93521 0.93139 0.88128 0.93177 0.92482 0.90325 0.90149 0.91846 0.87479 0.88876 0.89213 0.86801 0.92821 0.91983 0.80233 0.93101 0.86118 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.09 10.24 -148.98 -1.53 -8.61 16 3 C 0.09 1.47 4.67 71.98 0.34 1.80 16 4 C -0.11 -1.79 2.16 -11.54 -0.02 -1.81 16 5 H 0.11 1.77 7.57 -2.39 -0.02 1.75 16 6 C -0.15 -1.97 8.64 71.98 0.62 -1.35 16 7 C 0.53 10.36 7.10 87.66 0.62 10.99 16 8 O -0.57 -14.11 15.35 -3.02 -0.05 -14.16 16 9 N -0.61 -10.53 2.92 -819.84 -2.39 -12.92 16 10 C 0.11 1.70 6.41 86.37 0.55 2.25 16 11 C -0.05 -0.80 6.44 30.04 0.19 -0.60 16 12 C -0.22 -4.98 6.43 24.95 0.16 -4.82 16 13 S 0.17 4.33 23.17 -56.49 -1.31 3.02 16 14 C 0.03 1.01 6.75 88.57 0.60 1.61 16 15 C 0.23 8.87 6.84 85.63 0.59 9.46 16 16 N -0.75 -35.23 5.40 -347.18 -1.87 -37.11 16 17 C -0.24 -13.30 10.47 84.03 0.88 -12.42 16 18 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 19 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 20 N -0.98 -61.70 13.97 21.65 0.30 -61.40 16 21 Si 0.95 45.35 27.74 68.60 1.90 47.25 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 25 N -0.48 -15.22 10.51 -176.99 -1.86 -17.08 16 26 C 0.02 0.62 6.86 42.14 0.29 0.91 16 27 C 0.19 3.50 5.04 86.03 0.43 3.93 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.92 7.95 -2.39 -0.02 0.91 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.93 4.82 -2.39 -0.01 0.92 16 34 H 0.08 1.08 7.82 -2.39 -0.02 1.06 16 35 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.11 1.62 7.01 -2.39 -0.02 1.60 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.36 16.84 5.52 -92.71 -0.51 16.33 16 43 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.12 1.98 5.09 -2.39 -0.01 1.96 16 45 H 0.11 1.70 7.87 -2.39 -0.02 1.68 16 Total: -1.00 -72.32 375.78 0.61 -71.71 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.45 Total: 20.55 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.96 Total: 8.75 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.82 Total: -128.50 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.57 Total: -22.77 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.31 Total: 3.02 kcal Total: -72.32 0.61 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316810397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.858 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds