Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46678 * 2 1 4 4 C 1.53004 * 109.47241 * 119.99439 * 2 1 3 5 5 N 1.46493 * 109.47013 * 175.00293 * 4 2 1 6 6 C 1.34779 * 119.99954 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00105 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46859 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99981 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99366 * 359.97438 * 10 9 8 12 12 C 1.38797 * 120.00275 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99638 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99911 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47116 * 90.00205 * 14 12 10 16 16 H 1.48502 * 109.46955 * 209.99741 * 14 12 10 17 17 H 1.48497 * 109.47437 * 329.99793 * 14 12 10 18 18 N 1.46895 * 109.47700 * 240.00052 * 2 1 3 19 19 C 1.46899 * 111.00209 * 84.99333 * 18 2 1 20 20 C 1.50706 * 109.46939 * 180.02562 * 19 18 2 21 21 C 1.35448 * 126.77201 * 90.00445 * 20 19 18 22 22 C 1.41384 * 103.98528 * 179.74051 * 21 20 19 23 23 C 1.50698 * 126.80687 * 180.20620 * 22 21 20 24 24 C 1.53005 * 117.49568 * 343.61960 * 23 22 21 25 25 C 1.53002 * 60.00102 * 252.51363 * 24 23 22 26 26 N 1.30176 * 106.39294 * 0.22557 * 22 21 20 27 27 O 1.20926 * 111.60451 * 359.97438 * 26 22 21 28 28 H 1.08998 * 109.47114 * 60.00637 * 1 2 3 29 29 H 1.09006 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47502 * 300.00440 * 1 2 3 31 31 H 1.09003 * 109.47236 * 295.00536 * 4 2 1 32 32 H 1.08998 * 109.46729 * 54.99928 * 4 2 1 33 33 H 0.96999 * 120.00542 * 0.02562 * 5 4 2 34 34 H 1.09003 * 109.47178 * 300.00225 * 8 6 5 35 35 H 1.08998 * 109.47045 * 60.00593 * 8 6 5 36 36 H 0.97003 * 119.99786 * 180.02562 * 13 12 10 37 37 H 1.00893 * 111.00467 * 208.95700 * 18 2 1 38 38 H 1.09002 * 109.46994 * 60.00703 * 19 18 2 39 39 H 1.08992 * 109.47339 * 300.00478 * 19 18 2 40 40 H 1.08002 * 128.01287 * 0.02562 * 21 20 19 41 41 H 1.08992 * 115.55272 * 129.32925 * 23 22 21 42 42 H 1.08998 * 117.49888 * 0.02562 * 24 23 22 43 43 H 1.08996 * 117.49332 * 145.02375 * 24 23 22 44 44 H 1.08996 * 117.50011 * 252.51302 * 25 24 23 45 45 H 1.09003 * 117.51607 * 107.48305 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1731 -1.4280 2.1913 7 8 3.5699 -1.8829 3.1402 8 6 5.6750 -1.5355 2.1313 9 16 6.2783 -2.3888 3.6092 10 6 8.0101 -2.3759 3.2844 11 1 8.3863 -1.9234 2.3788 12 6 8.8907 -2.9482 4.1919 13 7 8.4321 -3.5001 5.2954 14 14 10.7266 -2.9338 3.8479 15 1 11.3278 -1.7022 4.4198 16 1 11.3561 -4.1266 4.4696 17 1 10.9557 -2.9613 2.3810 18 7 2.0197 -0.6924 -1.1994 19 6 2.0825 0.2226 -2.3469 20 6 2.5875 -0.5219 -3.5559 21 6 1.8401 -1.1842 -4.4710 22 6 2.7908 -1.6908 -5.3866 23 6 2.5093 -2.5111 -6.6191 24 6 1.1303 -3.1638 -6.7335 25 6 2.3619 -4.0237 -6.4425 26 7 3.9575 -1.3087 -4.9539 27 8 3.8649 -0.6606 -3.9372 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9824 -0.4620 0.4320 34 1 5.9638 -2.0986 1.2437 35 1 6.1092 -0.5368 2.0852 36 1 9.0475 -3.8998 5.9298 37 1 2.9173 -1.1204 -1.0286 38 1 2.7588 1.0462 -2.1182 39 1 1.0871 0.6162 -2.5525 40 1 0.7661 -1.2953 -4.4979 41 1 2.9756 -2.1547 -7.5376 42 1 0.4265 -2.9996 -5.9176 43 1 0.6890 -3.2368 -7.7275 44 1 2.7308 -4.6624 -7.2450 45 1 2.4688 -4.4256 -5.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317228588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = 49.989374 kcal Electronic energy + Delta-G solvation = -25806.782525 eV Core-core repulsion = 21954.793313 eV Total energy + Delta-G solvation = -3851.989213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.23287 -39.51091 -37.96832 -37.78232 -34.57124 -33.53186 -32.75250 -32.42481 -30.55723 -29.37001 -26.49785 -25.60038 -25.19201 -24.95156 -23.13651 -22.39351 -21.03887 -20.48225 -20.09986 -18.07089 -17.89139 -17.56989 -16.73097 -16.31614 -16.23397 -16.05124 -15.47746 -14.99929 -14.85703 -14.79925 -14.52306 -14.07808 -13.69809 -13.42664 -13.21413 -12.98140 -12.90895 -12.64985 -12.49451 -12.19226 -12.14064 -11.97800 -11.83219 -11.74352 -11.47077 -11.26664 -11.05849 -11.02042 -10.84345 -10.75451 -10.09669 -9.81905 -9.75794 -9.46153 -9.07343 -9.00884 -8.97997 -8.24379 -6.50209 -6.21459 -3.92117 1.09890 1.85630 2.69561 2.98313 3.04925 3.23045 3.23092 3.28061 3.32170 3.62185 3.69127 3.77689 4.08339 4.20691 4.36470 4.37709 4.48381 4.59797 4.66912 4.76188 4.84654 4.92923 4.97439 5.10839 5.13834 5.15103 5.17272 5.31652 5.39848 5.40326 5.45635 5.50676 5.58711 5.60688 5.64973 5.69175 5.79066 5.87336 5.93535 6.12506 6.41132 6.49116 6.79189 7.56953 7.60457 7.97372 8.35645 8.54671 9.24026 10.85966 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.002261 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.479379 B =12378.539818 C =14314.658185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.056 0.944 4 C 0.118 3.882 5 N -0.744 5.744 6 C 0.534 3.466 7 O -0.514 6.514 8 C -0.155 4.155 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.682 5.682 19 C 0.140 3.860 20 C -0.032 4.032 21 C -0.204 4.204 22 C 0.044 3.956 23 C -0.089 4.089 24 C -0.162 4.162 25 C -0.162 4.162 26 N -0.355 5.355 27 O 0.103 5.897 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.351 0.649 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.171 0.829 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.624 8.128 -23.247 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 H 0.074 0.926 4 C -0.006 4.006 5 N -0.400 5.400 6 C 0.320 3.680 7 O -0.387 6.387 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.318 5.318 19 C 0.010 3.990 20 C -0.096 4.096 21 C -0.226 4.226 22 C -0.114 4.114 23 C -0.108 4.108 24 C -0.200 4.200 25 C -0.200 4.200 26 N -0.057 5.057 27 O 0.035 5.965 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.188 0.812 41 H 0.140 0.860 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.941 6.853 -22.070 29.880 hybrid contribution 2.100 1.219 -1.434 2.820 sum -16.841 8.073 -23.504 30.021 Atomic orbital electron populations 1.21750 0.93041 1.03143 1.01794 1.21825 0.97036 0.96257 0.88353 0.92559 1.21515 0.80508 1.01766 0.96858 1.46058 1.07101 1.62289 1.24542 1.20304 0.89513 0.76611 0.81559 1.90713 1.69872 1.45693 1.32437 1.23542 0.93439 1.05712 1.07824 1.85392 1.04662 1.73141 1.20078 1.22866 0.91488 1.44312 1.09689 0.90914 1.24993 0.99616 0.94516 0.94479 1.70018 1.35404 1.35477 1.09389 0.86165 0.82891 0.77842 0.78595 1.20268 1.20743 1.19670 1.60552 1.34687 1.32607 1.03967 1.20407 1.01341 0.92144 0.85062 1.24287 0.83822 1.02196 0.99301 1.22310 1.01841 1.02797 0.95653 1.22662 0.88788 1.01388 0.98607 1.20099 1.02389 0.93860 0.94408 1.23029 0.90402 1.02850 1.03697 1.23039 1.01507 0.91657 1.03813 1.73857 1.23042 1.10055 0.98783 1.84858 1.27418 1.53072 1.31146 0.92339 0.91355 0.91804 0.90587 0.90479 0.77303 0.89156 0.89220 0.92182 0.82856 0.92338 0.87450 0.81166 0.86024 0.88158 0.87814 0.87844 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.41 37.16 0.35 -0.48 16 2 C 0.07 0.53 2.81 -67.72 -0.19 0.34 16 3 H 0.06 0.35 7.80 -51.93 -0.40 -0.06 16 4 C 0.12 1.24 5.31 -4.04 -0.02 1.22 16 5 N -0.74 -9.29 4.99 -60.29 -0.30 -9.59 16 6 C 0.53 9.73 7.85 -10.98 -0.09 9.64 16 7 O -0.51 -11.49 15.86 5.55 0.09 -11.40 16 8 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 14 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 N -0.68 -5.10 6.29 -108.00 -0.68 -5.78 16 19 C 0.14 0.85 6.05 -4.97 -0.03 0.82 16 20 C -0.03 -0.27 7.00 -35.30 -0.25 -0.52 16 21 C -0.20 -1.68 10.40 -39.38 -0.41 -2.09 16 22 C 0.04 0.44 6.95 -82.10 -0.57 -0.13 16 23 C -0.09 -0.69 6.33 -91.77 -0.58 -1.27 16 24 C -0.16 -0.90 10.04 -26.73 -0.27 -1.17 16 25 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16 26 N -0.36 -4.34 12.07 33.42 0.40 -3.93 16 27 O 0.10 1.14 11.20 17.19 0.19 1.33 16 28 H 0.06 0.29 7.45 -51.93 -0.39 -0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.39 3.85 7.37 -40.82 -0.30 3.55 16 34 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.35 3.03 6.70 -39.30 -0.26 2.76 16 38 H 0.06 0.30 8.06 -51.93 -0.42 -0.12 16 39 H 0.11 0.47 7.43 -51.93 -0.39 0.08 16 40 H 0.17 1.01 7.63 -52.49 -0.40 0.61 16 41 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.52 7.35 -51.93 -0.38 0.13 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -35.61 395.95 -9.45 -45.06 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.71 Total: 2.06 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.91 Total: -10.91 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.16 Total: -44.82 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.28 Total: -10.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.61 -9.45 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317228588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.049 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds