Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46678 * 2 1 4 4 C 1.53004 * 109.47241 * 119.99439 * 2 1 3 5 5 N 1.46493 * 109.47013 * 175.00293 * 4 2 1 6 6 C 1.34779 * 119.99954 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00105 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.46859 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99981 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99366 * 359.97438 * 10 9 8 12 12 C 1.38797 * 120.00275 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99638 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99911 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47116 * 90.00205 * 14 12 10 16 16 H 1.48502 * 109.46955 * 209.99741 * 14 12 10 17 17 H 1.48497 * 109.47437 * 329.99793 * 14 12 10 18 18 N 1.46895 * 109.47700 * 240.00052 * 2 1 3 19 19 C 1.46899 * 111.00209 * 84.99333 * 18 2 1 20 20 C 1.50706 * 109.46939 * 180.02562 * 19 18 2 21 21 C 1.35448 * 126.77201 * 90.00445 * 20 19 18 22 22 C 1.41384 * 103.98528 * 179.74051 * 21 20 19 23 23 C 1.50698 * 126.80687 * 180.20620 * 22 21 20 24 24 C 1.53005 * 117.49568 * 343.61960 * 23 22 21 25 25 C 1.53002 * 60.00102 * 252.51363 * 24 23 22 26 26 N 1.30176 * 106.39294 * 0.22557 * 22 21 20 27 27 O 1.20926 * 111.60451 * 359.97438 * 26 22 21 28 28 H 1.08998 * 109.47114 * 60.00637 * 1 2 3 29 29 H 1.09006 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47502 * 300.00440 * 1 2 3 31 31 H 1.09003 * 109.47236 * 295.00536 * 4 2 1 32 32 H 1.08998 * 109.46729 * 54.99928 * 4 2 1 33 33 H 0.96999 * 120.00542 * 0.02562 * 5 4 2 34 34 H 1.09003 * 109.47178 * 300.00225 * 8 6 5 35 35 H 1.08998 * 109.47045 * 60.00593 * 8 6 5 36 36 H 0.97003 * 119.99786 * 180.02562 * 13 12 10 37 37 H 1.00893 * 111.00467 * 208.95700 * 18 2 1 38 38 H 1.09002 * 109.46994 * 60.00703 * 19 18 2 39 39 H 1.08992 * 109.47339 * 300.00478 * 19 18 2 40 40 H 1.08002 * 128.01287 * 0.02562 * 21 20 19 41 41 H 1.08992 * 115.55272 * 129.32925 * 23 22 21 42 42 H 1.08998 * 117.49888 * 0.02562 * 24 23 22 43 43 H 1.08996 * 117.49332 * 145.02375 * 24 23 22 44 44 H 1.08996 * 117.50011 * 252.51302 * 25 24 23 45 45 H 1.09003 * 117.51607 * 107.48305 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1731 -1.4280 2.1913 7 8 3.5699 -1.8829 3.1402 8 6 5.6750 -1.5355 2.1313 9 16 6.2783 -2.3888 3.6092 10 6 8.0101 -2.3759 3.2844 11 1 8.3863 -1.9234 2.3788 12 6 8.8907 -2.9482 4.1919 13 7 8.4321 -3.5001 5.2954 14 14 10.7266 -2.9338 3.8479 15 1 11.3278 -1.7022 4.4198 16 1 11.3561 -4.1266 4.4696 17 1 10.9557 -2.9613 2.3810 18 7 2.0197 -0.6924 -1.1994 19 6 2.0825 0.2226 -2.3469 20 6 2.5875 -0.5219 -3.5559 21 6 1.8401 -1.1842 -4.4710 22 6 2.7908 -1.6908 -5.3866 23 6 2.5093 -2.5111 -6.6191 24 6 1.1303 -3.1638 -6.7335 25 6 2.3619 -4.0237 -6.4425 26 7 3.9575 -1.3087 -4.9539 27 8 3.8649 -0.6606 -3.9372 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7516 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9824 -0.4620 0.4320 34 1 5.9638 -2.0986 1.2437 35 1 6.1092 -0.5368 2.0852 36 1 9.0475 -3.8998 5.9298 37 1 2.9173 -1.1204 -1.0286 38 1 2.7588 1.0462 -2.1182 39 1 1.0871 0.6162 -2.5525 40 1 0.7661 -1.2953 -4.4979 41 1 2.9756 -2.1547 -7.5376 42 1 0.4265 -2.9996 -5.9176 43 1 0.6890 -3.2368 -7.7275 44 1 2.7308 -4.6624 -7.2450 45 1 2.4688 -4.4256 -5.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317228588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = 24.931825 kcal Electronic energy + Delta-G solvation = -25807.869102 eV Core-core repulsion = 21954.793313 eV Total energy + Delta-G solvation = -3853.075790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.95422 -40.78555 -38.63882 -38.50114 -35.53545 -34.59687 -34.25665 -33.60234 -31.43945 -30.60164 -27.75595 -27.12522 -26.11824 -25.58229 -23.70662 -22.94021 -21.84978 -21.67758 -20.72808 -19.87770 -18.66835 -18.43868 -17.87735 -17.45676 -17.05485 -16.89269 -16.79349 -16.42617 -15.97570 -15.87565 -15.53796 -15.09494 -14.75543 -14.55222 -14.30510 -14.09315 -13.82342 -13.58981 -13.25794 -13.17902 -13.05273 -12.90214 -12.84709 -12.66030 -12.59742 -12.45442 -12.41394 -12.07647 -11.88062 -11.72205 -11.37359 -11.15412 -10.99941 -10.69990 -10.45813 -10.29534 -10.18346 -9.54784 -8.67728 -8.35917 -6.13804 0.42948 1.19583 1.25554 1.41294 1.45471 1.56294 1.57989 2.09929 2.22414 2.27100 2.70533 2.98183 3.07708 3.16643 3.30783 3.51988 3.68965 3.83781 3.93897 3.98262 4.08270 4.10566 4.17992 4.26342 4.29994 4.39338 4.42796 4.48937 4.64008 4.66334 4.70568 4.76580 4.86661 4.93903 4.96829 5.05925 5.07641 5.10453 5.19956 5.32891 5.40825 5.48985 5.87521 6.13758 6.18704 6.39082 7.05524 7.18431 7.28495 8.73268 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.002261 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.479379 B =12378.539818 C =14314.658185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.076 0.924 4 C 0.116 3.884 5 N -0.716 5.716 6 C 0.536 3.464 7 O -0.562 6.562 8 C -0.132 4.132 9 S -0.149 6.149 10 C -0.547 4.547 11 H 0.081 0.919 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.260 1.260 18 N -0.690 5.690 19 C 0.143 3.857 20 C -0.032 4.032 21 C -0.206 4.206 22 C 0.036 3.964 23 C -0.109 4.109 24 C -0.140 4.140 25 C -0.170 4.170 26 N -0.396 5.396 27 O 0.083 5.917 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.342 0.658 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.195 0.805 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.410 9.646 -25.518 33.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.094 0.906 4 C -0.008 4.008 5 N -0.371 5.371 6 C 0.322 3.678 7 O -0.440 6.440 8 C -0.283 4.283 9 S 0.078 5.922 10 C -0.695 4.695 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.184 1.184 18 N -0.325 5.325 19 C 0.014 3.986 20 C -0.096 4.096 21 C -0.227 4.227 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.177 4.177 25 C -0.208 4.208 26 N -0.102 5.102 27 O 0.018 5.982 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.212 0.788 41 H 0.142 0.858 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.753 8.418 -24.385 32.491 hybrid contribution 2.214 0.782 -0.816 2.486 sum -17.539 9.200 -25.201 32.052 Atomic orbital electron populations 1.21749 0.91849 1.02826 1.03060 1.21766 0.97727 0.96399 0.86296 0.90591 1.21683 0.78615 1.01499 0.98960 1.45772 1.08120 1.59982 1.23229 1.20002 0.88785 0.76898 0.82113 1.90702 1.70391 1.48224 1.34663 1.23388 0.94902 1.05815 1.04200 1.85546 1.05790 1.75162 1.25660 1.23196 0.91728 1.44415 1.10112 0.90039 1.26120 1.05192 0.93794 0.94058 1.70179 1.37376 1.36515 1.10601 0.84961 0.75905 0.78177 0.78994 1.19189 1.20244 1.18389 1.60579 1.34203 1.33298 1.04457 1.20592 1.02888 0.91671 0.83443 1.24794 0.82988 1.01867 0.99921 1.22645 1.02785 1.02282 0.95034 1.23164 0.88731 1.01008 0.99304 1.20246 1.04610 0.94105 0.93796 1.23150 0.89391 1.00179 1.05013 1.23075 1.02986 0.91314 1.03442 1.73845 1.24611 1.11815 0.99919 1.84801 1.28815 1.53391 1.31142 0.90417 0.92498 0.91212 0.90832 0.92038 0.75298 0.87503 0.87153 0.91968 0.83845 0.90945 0.85022 0.78795 0.85817 0.87532 0.85763 0.86681 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.41 71.98 0.68 -0.56 16 2 C 0.09 0.99 2.81 44.92 0.13 1.11 16 3 H 0.08 0.63 7.80 -2.39 -0.02 0.61 16 4 C 0.12 2.28 5.31 86.38 0.46 2.74 16 5 N -0.72 -16.78 4.99 -463.06 -2.31 -19.09 16 6 C 0.54 19.37 7.85 87.66 0.69 20.06 16 7 O -0.56 -25.72 15.86 -3.06 -0.05 -25.77 16 8 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.55 -31.50 9.50 67.95 0.65 -30.86 16 11 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.76 5.49 84.86 0.47 1.22 16 13 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 14 Si 1.00 44.11 29.55 68.60 2.03 46.14 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 18 N -0.69 -8.52 6.29 -495.59 -3.12 -11.63 16 19 C 0.14 1.28 6.05 85.56 0.52 1.80 16 20 C -0.03 -0.49 7.00 25.04 0.18 -0.31 16 21 C -0.21 -3.03 10.40 22.40 0.23 -2.80 16 22 C 0.04 0.70 6.95 43.58 0.30 1.00 16 23 C -0.11 -1.59 6.33 -11.54 -0.07 -1.67 16 24 C -0.14 -1.25 10.04 30.60 0.31 -0.95 16 25 C -0.17 -2.19 10.23 30.60 0.31 -1.87 16 26 N -0.40 -9.76 12.07 -49.54 -0.60 -10.36 16 27 O 0.08 1.82 11.20 71.69 0.80 2.62 16 28 H 0.08 0.44 7.45 -2.39 -0.02 0.42 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.41 7.03 7.37 -92.71 -0.68 6.35 16 34 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.34 5.21 6.70 -89.70 -0.60 4.61 16 38 H 0.07 0.49 8.06 -2.39 -0.02 0.47 16 39 H 0.13 0.58 7.43 -2.39 -0.02 0.56 16 40 H 0.19 1.73 7.63 -2.91 -0.02 1.71 16 41 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.11 0.82 7.35 -2.39 -0.02 0.80 16 43 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -81.02 395.95 0.89 -80.12 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.27 Total: 19.28 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.28 Total: -15.86 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.74 Total: -97.07 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.75 Total: -23.15 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -81.02 0.89 -80.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317228588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.056 kcal (2) G-P(sol) polarization free energy of solvation -81.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds