Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47022 * 2 1 4 4 C 1.52999 * 109.47178 * 239.99483 * 2 1 3 5 5 N 1.46502 * 109.47101 * 185.00099 * 4 2 1 6 6 C 1.34773 * 119.99880 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00612 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99971 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47211 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00122 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00161 * 0.02562 * 10 9 8 12 12 C 1.38804 * 120.00006 * 180.02562 * 10 9 8 13 13 N 1.31623 * 119.99887 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99794 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47214 * 89.99731 * 14 12 10 16 16 H 1.48498 * 109.47128 * 209.99889 * 14 12 10 17 17 H 1.48502 * 109.47322 * 329.99836 * 14 12 10 18 18 N 1.46902 * 109.47018 * 119.99654 * 2 1 3 19 19 C 1.46895 * 111.00059 * 274.99958 * 18 2 1 20 20 C 1.50706 * 109.47186 * 180.02562 * 19 18 2 21 21 C 1.35451 * 126.77668 * 90.00426 * 20 19 18 22 22 C 1.41380 * 103.98649 * 180.22754 * 21 20 19 23 23 C 1.50696 * 126.80347 * 179.77327 * 22 21 20 24 24 C 1.52994 * 117.49796 * 343.61429 * 23 22 21 25 25 C 1.52997 * 117.49539 * 274.99277 * 23 22 21 26 26 N 1.30187 * 106.39102 * 359.62830 * 22 21 20 27 27 O 1.20916 * 111.60590 * 0.39612 * 26 22 21 28 28 H 1.09002 * 109.46990 * 60.00523 * 1 2 3 29 29 H 1.09001 * 109.47549 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47509 * 300.00534 * 1 2 3 31 31 H 1.08992 * 109.47247 * 304.99990 * 4 2 1 32 32 H 1.09000 * 109.47200 * 65.00445 * 4 2 1 33 33 H 0.96997 * 120.00285 * 0.02562 * 5 4 2 34 34 H 1.08991 * 109.47418 * 300.00210 * 8 6 5 35 35 H 1.09009 * 109.46883 * 60.00353 * 8 6 5 36 36 H 0.97008 * 119.99791 * 180.02562 * 13 12 10 37 37 H 1.00906 * 110.99966 * 151.04705 * 18 2 1 38 38 H 1.09003 * 109.47552 * 60.00111 * 19 18 2 39 39 H 1.09005 * 109.47296 * 299.99790 * 19 18 2 40 40 H 1.08002 * 128.00468 * 359.95534 * 21 20 19 41 41 H 1.09004 * 115.55166 * 129.32481 * 23 22 21 42 42 H 1.09003 * 117.49944 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50149 * 145.02148 * 24 23 22 44 44 H 1.09009 * 117.49699 * 214.97886 * 25 23 22 45 45 H 1.08999 * 117.50557 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1904 6 6 4.1730 -1.4285 -2.1910 7 8 3.5700 -1.8836 -3.1397 8 6 5.6750 -1.5361 -2.1309 9 16 6.2784 -2.3896 -3.6086 10 6 8.0101 -2.3767 -3.2837 11 1 8.3863 -1.9241 -2.3782 12 6 8.8908 -2.9483 -4.1917 13 7 8.4322 -3.5004 -5.2950 14 14 10.7266 -2.9353 -3.8469 15 1 11.0976 -4.1604 -3.0940 16 1 11.4712 -2.8990 -5.1312 17 1 11.0705 -1.7361 -3.0413 18 7 2.0196 -0.6924 1.1995 19 6 2.0824 0.2227 2.3469 20 6 2.5884 -0.5214 3.5558 21 6 3.8795 -0.6593 3.9414 22 6 3.8033 -1.4399 5.1177 23 6 4.9565 -1.9030 5.9701 24 6 6.3572 -1.8407 5.3579 25 6 5.6682 -3.1924 5.5556 26 7 2.5393 -1.6766 5.3203 27 8 1.8496 -1.1772 4.4618 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -1.7198 -1.2950 32 1 1.7517 -0.1585 -2.1369 33 1 3.9823 -0.4629 -0.4315 34 1 6.1093 -0.5375 -2.0849 35 1 5.9637 -2.0992 -1.2432 36 1 9.0477 -3.9002 -5.9294 37 1 2.9173 -1.1205 1.0288 38 1 1.0870 0.6165 2.5525 39 1 2.7588 1.0463 2.1182 40 1 4.7630 -0.2679 3.4591 41 1 4.8638 -1.7000 7.0371 42 1 6.4447 -1.4644 4.3386 43 1 7.1864 -1.5965 6.0219 44 1 6.0440 -3.8375 6.3499 45 1 5.3021 -3.7060 4.6666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317228589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = 49.792361 kcal Electronic energy + Delta-G solvation = -26006.768885 eV Core-core repulsion = 22154.771129 eV Total energy + Delta-G solvation = -3851.997756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.21831 -39.54113 -37.91652 -37.80526 -34.60340 -33.51772 -32.75071 -32.46091 -30.54820 -29.39695 -26.50232 -25.62643 -25.20683 -24.94664 -23.07805 -22.33159 -21.04656 -20.53374 -20.11519 -18.10715 -17.87500 -17.60481 -16.59060 -16.32693 -16.24578 -16.04875 -15.38555 -14.92253 -14.87925 -14.83518 -14.61532 -14.16373 -14.04278 -13.41135 -13.12191 -12.97428 -12.69638 -12.67923 -12.46702 -12.28554 -12.02776 -11.91149 -11.85623 -11.77580 -11.44694 -11.25658 -11.09217 -11.05871 -10.79372 -10.79093 -10.09294 -9.85559 -9.76330 -9.49459 -9.10830 -9.01303 -9.00378 -8.27872 -6.53930 -6.24899 -3.95855 1.09759 1.84705 2.72187 2.94457 3.01565 3.19847 3.24823 3.28296 3.28458 3.57709 3.69349 3.76546 4.14066 4.17015 4.37086 4.41998 4.52360 4.61728 4.69552 4.79040 4.84462 4.84841 4.98670 5.07192 5.10396 5.14581 5.23741 5.32564 5.41495 5.44982 5.47749 5.50567 5.59030 5.63682 5.69717 5.71661 5.78866 5.82223 5.96134 6.06457 6.41337 6.46193 6.79726 7.53292 7.56366 7.98921 8.31577 8.51371 9.20398 10.82514 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.002710 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.401270 B =10331.472662 C =13279.500809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.056 0.944 4 C 0.117 3.883 5 N -0.744 5.744 6 C 0.533 3.467 7 O -0.512 6.512 8 C -0.154 4.154 9 S -0.058 6.058 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.682 5.682 19 C 0.137 3.863 20 C -0.023 4.023 21 C -0.222 4.222 22 C 0.048 3.952 23 C -0.091 4.091 24 C -0.162 4.162 25 C -0.162 4.162 26 N -0.359 5.359 27 O 0.111 5.889 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.392 0.608 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.349 0.651 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.171 0.829 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 9.991 21.258 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 H 0.074 0.926 4 C -0.007 4.007 5 N -0.400 5.400 6 C 0.319 3.681 7 O -0.386 6.386 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.318 5.318 19 C 0.007 3.993 20 C -0.087 4.087 21 C -0.244 4.244 22 C -0.110 4.110 23 C -0.109 4.109 24 C -0.199 4.199 25 C -0.199 4.199 26 N -0.061 5.061 27 O 0.043 5.957 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.225 0.775 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.170 0.830 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.188 0.812 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.528 8.215 20.589 25.969 hybrid contribution 3.526 1.566 1.068 4.003 sum -10.002 9.782 21.657 25.783 Atomic orbital electron populations 1.21758 0.92968 1.03263 1.01840 1.21814 0.97146 0.96135 0.88257 0.92627 1.21529 0.80407 1.01849 0.96900 1.46047 1.07139 1.62311 1.24455 1.20300 0.89499 0.76673 0.81606 1.90716 1.69859 1.45588 1.32400 1.23537 0.93470 1.05648 1.07836 1.85428 1.04636 1.73067 1.20053 1.22856 0.91495 1.44456 1.09673 0.90951 1.24992 0.99611 0.94524 0.94433 1.70014 1.35466 1.35349 1.09383 0.86169 0.82814 0.78620 0.77906 1.20236 1.20730 1.19701 1.60490 1.34579 1.32776 1.03951 1.20398 1.02593 0.91778 0.84523 1.24246 0.90567 0.98829 0.95054 1.22410 0.97944 1.05394 0.98663 1.22624 0.92232 0.99628 0.96487 1.20111 0.89096 1.03753 0.97986 1.23038 0.93630 1.00567 1.02660 1.23036 1.02494 0.90563 1.03848 1.73841 1.04881 1.16574 1.10792 1.84857 1.34095 1.49868 1.26851 0.91822 0.91293 0.92209 0.90419 0.90552 0.77463 0.89283 0.89247 0.92139 0.83017 0.88196 0.91330 0.81171 0.86054 0.88094 0.87737 0.87839 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.41 37.15 0.35 -0.56 16 2 C 0.08 0.54 2.81 -67.72 -0.19 0.35 16 3 H 0.06 0.33 7.80 -51.93 -0.40 -0.07 16 4 C 0.12 1.22 5.31 -4.04 -0.02 1.20 16 5 N -0.74 -8.86 4.99 -60.30 -0.30 -9.16 16 6 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 7 O -0.51 -11.28 15.86 5.56 0.09 -11.19 16 8 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 11 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 14 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 N -0.68 -5.12 6.29 -107.99 -0.68 -5.80 16 19 C 0.14 0.83 6.05 -4.98 -0.03 0.79 16 20 C -0.02 -0.19 7.00 -35.30 -0.25 -0.44 16 21 C -0.22 -1.87 10.40 -39.38 -0.41 -2.28 16 22 C 0.05 0.49 6.95 -82.10 -0.57 -0.08 16 23 C -0.09 -0.75 6.33 -91.78 -0.58 -1.33 16 24 C -0.16 -1.09 10.04 -26.74 -0.27 -1.36 16 25 C -0.16 -1.24 10.23 -26.73 -0.27 -1.51 16 26 N -0.36 -4.31 12.07 33.43 0.40 -3.91 16 27 O 0.11 1.22 11.20 17.17 0.19 1.42 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.33 7.45 -51.93 -0.39 -0.05 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.39 3.48 7.37 -40.82 -0.30 3.18 16 34 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 35 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.35 2.81 6.70 -39.29 -0.26 2.54 16 38 H 0.10 0.52 7.44 -51.93 -0.39 0.13 16 39 H 0.07 0.29 8.06 -51.93 -0.42 -0.12 16 40 H 0.17 1.05 7.63 -52.49 -0.40 0.65 16 41 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 0.67 7.35 -51.93 -0.38 0.29 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -35.17 395.94 -9.45 -44.63 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.71 Total: 2.28 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.91 Total: -11.36 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.16 Total: -44.02 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.28 Total: -9.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.17 -9.45 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317228589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.418 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds