Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47377 * 2 1 4 4 C 1.53005 * 109.47094 * 239.99815 * 2 1 3 5 5 N 1.46492 * 109.47123 * 185.00358 * 4 2 1 6 6 C 1.34783 * 120.00112 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99536 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00085 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47172 * 59.99745 * 8 6 5 10 10 C 1.52998 * 109.46985 * 299.99609 * 8 6 5 11 11 C 1.50697 * 109.46955 * 179.97438 * 8 6 5 12 12 C 1.38421 * 122.53935 * 239.99453 * 11 8 6 13 13 C 1.33388 * 114.92066 * 179.72463 * 12 11 8 14 14 S 1.75885 * 109.59458 * 0.27968 * 13 12 11 15 15 C 1.33395 * 122.53872 * 60.25513 * 11 8 6 16 16 N 1.46898 * 109.46979 * 119.99981 * 2 1 3 17 17 C 1.46898 * 111.00033 * 274.99846 * 16 2 1 18 18 C 1.50699 * 109.47228 * 180.02562 * 17 16 2 19 19 O 1.21298 * 120.00243 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00317 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00563 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99852 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00290 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99883 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00137 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47235 * 59.99983 * 25 23 21 27 27 H 1.48503 * 109.47213 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46557 * 300.00233 * 25 23 21 29 29 H 1.08998 * 109.46864 * 60.00200 * 1 2 3 30 30 H 1.09004 * 109.47522 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46972 * 300.00158 * 1 2 3 32 32 H 1.08995 * 109.47242 * 64.99744 * 4 2 1 33 33 H 1.09000 * 109.46804 * 305.00069 * 4 2 1 34 34 H 0.96997 * 120.00499 * 359.97438 * 5 4 2 35 35 H 1.08993 * 109.47394 * 180.02562 * 10 8 6 36 36 H 1.09006 * 109.47505 * 300.00502 * 10 8 6 37 37 H 1.09003 * 109.47012 * 60.00334 * 10 8 6 38 38 H 1.08002 * 122.54201 * 0.02562 * 12 11 8 39 39 H 1.08004 * 125.20514 * 180.24987 * 13 12 11 40 40 H 1.07998 * 125.20353 * 359.97100 * 15 11 8 41 41 H 1.00908 * 110.99891 * 151.04416 * 16 2 1 42 42 H 1.08997 * 109.46903 * 300.00002 * 17 16 2 43 43 H 1.08995 * 109.47361 * 60.00300 * 17 16 2 44 44 H 0.97007 * 120.00039 * 359.97438 * 20 18 17 45 45 H 0.97004 * 120.00298 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1730 -1.4285 -2.1912 7 8 3.5699 -1.8834 -3.1399 8 6 5.6749 -1.5372 -2.1305 9 1 5.9628 -2.1008 -1.2431 10 6 6.2854 -0.1358 -2.0651 11 6 6.1772 -2.2475 -3.3610 12 6 6.8899 -3.4325 -3.2978 13 6 7.2552 -3.9323 -4.4794 14 16 6.6937 -2.8735 -5.7667 15 6 5.9730 -1.7794 -4.5933 16 7 2.0196 -0.6925 1.1994 17 6 2.0824 0.2226 2.3469 18 6 2.5884 -0.5215 3.5557 19 8 2.8687 -1.6985 3.4700 20 7 2.7286 0.1205 4.7324 21 6 3.1885 -0.5565 5.8323 22 1 3.4388 -1.6043 5.7558 23 6 3.3335 0.1056 7.0452 24 7 3.0293 1.3807 7.1382 25 14 3.9607 -0.8167 8.5437 26 1 5.3169 -1.3527 8.2632 27 1 4.0236 0.1082 9.7038 28 1 3.0395 -1.9391 8.8554 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -0.1585 -2.1370 33 1 1.6053 -1.7199 -1.2951 34 1 3.9824 -0.4623 -0.4320 35 1 7.3717 -0.2144 -2.0216 36 1 5.9974 0.4278 -2.9525 37 1 5.9221 0.3776 -1.1748 38 1 7.1279 -3.9182 -2.3630 39 1 7.8112 -4.8469 -4.6235 40 1 5.4422 -0.8701 -4.8339 41 1 2.9173 -1.1206 1.0287 42 1 2.7588 1.0461 2.1182 43 1 1.0871 0.6163 2.5525 44 1 2.5041 1.0618 4.8011 45 1 3.1302 1.8429 7.9851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317263047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -41.885190 kcal Electronic energy + Delta-G solvation = -26438.050152 eV Core-core repulsion = 22582.076959 eV Total energy + Delta-G solvation = -3855.973193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41878 -38.63683 -38.01990 -36.86306 -34.23252 -33.88346 -33.14995 -31.33148 -30.80670 -29.00097 -26.86180 -26.22579 -25.42394 -24.01317 -23.02451 -20.69051 -20.48070 -19.37393 -18.86222 -18.01250 -17.94764 -17.32163 -16.33792 -16.11380 -15.74637 -15.36611 -15.10536 -14.81263 -14.50972 -14.12764 -13.98638 -13.80725 -13.47083 -13.29906 -13.00239 -12.81720 -12.70865 -12.56563 -12.54449 -12.38905 -11.93781 -11.93063 -11.76176 -11.67042 -11.64668 -11.44438 -11.08964 -10.92075 -10.87023 -10.47261 -10.25042 -9.88583 -9.54027 -9.21793 -8.93595 -8.57303 -8.51882 -8.16978 -8.00570 -6.45596 -3.86629 0.86063 1.49012 1.80557 2.42902 2.53231 3.10599 3.17281 3.23472 3.27695 3.85232 4.01114 4.24662 4.42656 4.48308 4.63861 4.78441 4.94104 4.95816 4.99538 5.13807 5.15947 5.21209 5.26289 5.38274 5.43412 5.49288 5.51798 5.65006 5.71593 5.74328 5.79395 5.84875 5.92127 5.95853 6.15433 6.17725 6.22932 6.29396 6.34337 7.11391 7.29333 7.51300 7.53516 8.01726 8.07372 8.56631 9.13699 9.49570 10.00793 10.71894 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.002132 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.265599 B =13132.660202 C =14470.016078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.730 5.730 6 C 0.521 3.479 7 O -0.531 6.531 8 C -0.053 4.053 9 H 0.109 0.891 10 C -0.140 4.140 11 C -0.090 4.090 12 C -0.123 4.123 13 C -0.216 4.216 14 S 0.088 5.912 15 C -0.175 4.175 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.347 0.653 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -0.033 -22.110 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.005 4.005 5 N -0.383 5.383 6 C 0.306 3.694 7 O -0.407 6.407 8 C -0.077 4.077 9 H 0.127 0.873 10 C -0.198 4.198 11 C -0.103 4.103 12 C -0.154 4.154 13 C -0.352 4.352 14 S 0.351 5.649 15 C -0.310 4.310 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.795 -1.314 -24.124 24.631 hybrid contribution 0.952 0.923 2.658 2.971 sum 5.747 -0.390 -21.466 22.225 Atomic orbital electron populations 1.21737 0.93400 1.02979 1.01535 1.21809 0.97141 0.95890 0.89030 0.93360 1.21596 0.79304 1.02014 0.97554 1.46040 1.08070 1.60341 1.23893 1.20443 0.89577 0.77228 0.82141 1.90713 1.70059 1.46781 1.33117 1.20008 0.91692 0.98453 0.97559 0.87274 1.21801 1.01844 0.93528 1.02609 1.18315 1.01685 0.96395 0.93858 1.20073 1.00392 0.96018 0.98911 1.25498 1.09100 1.05057 0.95498 1.84207 1.52802 1.17032 1.10860 1.25321 1.05999 1.04429 0.95272 1.60117 1.34816 1.32274 1.02706 1.21755 1.01502 0.93770 0.91294 1.19791 0.85131 0.88222 0.84463 1.90534 1.55361 1.16068 1.84743 1.41860 1.57633 1.12436 1.07946 1.19649 1.40083 0.96432 0.86819 0.87965 1.25266 0.97600 0.95780 0.99250 1.69602 1.48492 1.08852 1.27310 0.85917 0.79430 0.78862 0.80013 1.19897 1.20966 1.19858 0.92509 0.91508 0.91976 0.90901 0.90346 0.76563 0.90942 0.91991 0.91588 0.84123 0.81914 0.82255 0.83160 0.93871 0.89395 0.77463 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.41 37.16 0.35 -1.12 16 2 C 0.07 0.81 2.81 -67.71 -0.19 0.62 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 4 C 0.12 1.31 5.31 -4.04 -0.02 1.29 16 5 N -0.73 -7.75 4.88 -60.30 -0.29 -8.04 16 6 C 0.52 6.18 7.06 -10.98 -0.08 6.11 16 7 O -0.53 -8.13 15.24 5.56 0.08 -8.04 16 8 C -0.05 -0.50 2.97 -92.93 -0.28 -0.78 16 9 H 0.11 0.93 8.03 -51.93 -0.42 0.52 16 10 C -0.14 -1.04 8.92 37.16 0.33 -0.71 16 11 C -0.09 -0.94 4.28 -106.25 -0.45 -1.40 16 12 C -0.12 -1.20 9.92 -41.21 -0.41 -1.61 16 13 C -0.22 -1.94 11.23 29.04 0.33 -1.61 16 14 S 0.09 0.81 23.34 -107.50 -2.51 -1.70 16 15 C -0.17 -1.82 9.27 29.04 0.27 -1.55 16 16 N -0.66 -9.94 5.93 -108.00 -0.64 -10.58 16 17 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 18 C 0.44 9.95 7.82 -10.99 -0.09 9.87 16 19 O -0.58 -15.37 15.78 5.54 0.09 -15.28 16 20 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 25 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.76 6.79 -40.82 -0.28 3.48 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 37 H 0.07 0.44 7.56 -51.93 -0.39 0.04 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.16 1.58 7.93 -52.49 -0.42 1.16 16 41 H 0.35 5.32 6.41 -39.29 -0.25 5.06 16 42 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 44 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -32.84 389.92 -8.81 -41.65 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -6.55 Total: 15.57 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.51 Total: 2.04 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.27 Total: -55.79 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.32 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.84 -8.81 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317263047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.236 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds