Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.46972 * 300.00080 * 8 6 5 10 10 C 1.53005 * 109.47094 * 60.00350 * 8 6 5 11 11 C 1.50697 * 109.47135 * 179.97438 * 8 6 5 12 12 C 1.38420 * 122.53979 * 119.99879 * 11 8 6 13 13 C 1.33392 * 114.92088 * 179.97438 * 12 11 8 14 14 S 1.75881 * 109.59410 * 359.97438 * 13 12 11 15 15 C 1.33395 * 122.53838 * 299.71248 * 11 8 6 16 16 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 17 17 C 1.46895 * 111.00561 * 275.00137 * 16 2 1 18 18 C 1.50699 * 109.47505 * 180.02562 * 17 16 2 19 19 O 1.21295 * 119.99607 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00043 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99820 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00168 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99647 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99567 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00375 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47206 * 89.99625 * 25 23 21 27 27 H 1.48500 * 109.47157 * 210.00190 * 25 23 21 28 28 H 1.48507 * 109.47022 * 330.00203 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 34 34 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 35 35 H 1.09004 * 109.46908 * 299.99611 * 10 8 6 36 36 H 1.09000 * 109.47443 * 59.99455 * 10 8 6 37 37 H 1.09001 * 109.47099 * 179.97438 * 10 8 6 38 38 H 1.08001 * 122.53809 * 359.95981 * 12 11 8 39 39 H 1.07996 * 125.20554 * 179.97438 * 13 12 11 40 40 H 1.07997 * 125.20057 * 0.02791 * 15 11 8 41 41 H 1.00902 * 110.99927 * 151.04624 * 16 2 1 42 42 H 1.09004 * 109.46925 * 300.00216 * 17 16 2 43 43 H 1.09001 * 109.46797 * 59.99650 * 17 16 2 44 44 H 0.97001 * 120.00239 * 359.97438 * 20 18 17 45 45 H 0.96999 * 119.99901 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8825 -3.1403 8 6 5.6751 -1.5359 -2.1310 9 1 6.1093 -0.5372 -2.0849 10 6 6.0803 -2.3262 -0.8851 11 6 6.1775 -2.2464 -3.3613 12 6 7.0564 -1.6579 -4.2542 13 6 7.4020 -2.4239 -5.2902 14 16 6.5948 -3.9817 -5.1671 15 6 5.8133 -3.4922 -3.6694 16 7 2.0196 -0.6924 1.1995 17 6 2.0824 0.2226 2.3469 18 6 2.5885 -0.5214 3.5558 19 8 2.8688 -1.6984 3.4700 20 7 2.7286 0.1207 4.7324 21 6 3.1885 -0.5564 5.8323 22 1 3.4381 -1.6043 5.7560 23 6 3.3335 0.1058 7.0453 24 7 3.7738 -0.5433 8.0997 25 14 2.9025 1.9186 7.1772 26 1 1.4731 2.0615 7.5535 27 1 3.7535 2.5556 8.2141 28 1 3.1382 2.5800 5.8686 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 3.9824 -0.4628 -0.4315 35 1 5.7169 -1.8127 0.0051 36 1 5.6460 -3.3249 -0.9311 37 1 7.1667 -2.4044 -0.8418 38 1 7.4334 -0.6545 -4.1223 39 1 8.0745 -2.1322 -6.0832 40 1 5.1403 -4.1056 -3.0888 41 1 2.9173 -1.1204 1.0288 42 1 2.7588 1.0463 2.1182 43 1 1.0870 0.6164 2.5525 44 1 2.5041 1.0619 4.8011 45 1 3.8754 -0.0810 8.9463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317263051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = -34.691659 kcal Electronic energy + Delta-G solvation = -26561.652850 eV Core-core repulsion = 22705.991592 eV Total energy + Delta-G solvation = -3855.661258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44342 -38.77471 -38.09691 -36.95485 -34.27599 -33.93233 -33.16941 -31.73128 -30.96083 -28.99452 -26.98074 -26.31801 -25.41601 -23.84882 -23.03580 -20.75506 -20.50220 -19.48039 -18.91833 -18.42517 -18.00637 -17.33099 -16.36522 -16.25338 -15.63206 -15.45413 -15.14730 -14.98680 -14.74985 -14.14928 -13.88091 -13.83962 -13.31996 -13.24352 -13.01974 -12.86420 -12.71264 -12.71038 -12.54781 -12.39440 -12.23462 -12.08219 -11.89976 -11.82811 -11.66818 -11.57618 -11.23697 -10.98843 -10.88705 -10.64027 -10.02087 -9.90560 -9.62245 -9.25871 -8.94201 -8.65655 -8.57951 -8.29132 -8.22165 -6.35535 -3.87246 0.85799 1.48605 1.80650 2.42026 2.48922 2.97717 3.03076 3.07755 3.11497 3.67243 3.95013 4.06044 4.43181 4.47993 4.57879 4.71704 4.80382 4.94074 4.99247 5.04041 5.12734 5.16047 5.17564 5.41049 5.45841 5.50139 5.52696 5.53871 5.62540 5.66790 5.77455 5.82707 5.85830 5.88033 5.93469 6.13346 6.17534 6.27222 6.28595 6.98078 7.25448 7.43383 7.53149 8.04260 8.09444 8.54528 8.90154 9.37366 9.76847 10.77456 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015841 B = 0.002182 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.150189 B =12826.965439 C =13895.319355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.731 5.731 6 C 0.520 3.480 7 O -0.530 6.530 8 C -0.050 4.050 9 H 0.105 0.895 10 C -0.143 4.143 11 C -0.093 4.093 12 C -0.124 4.124 13 C -0.219 4.219 14 S 0.091 5.909 15 C -0.171 4.171 16 N -0.664 5.664 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.349 0.651 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.646 3.447 -24.274 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.384 5.384 6 C 0.306 3.694 7 O -0.406 6.406 8 C -0.074 4.074 9 H 0.123 0.877 10 C -0.201 4.201 11 C -0.106 4.106 12 C -0.155 4.155 13 C -0.354 4.354 14 S 0.355 5.645 15 C -0.307 4.307 16 N -0.299 5.299 17 C -0.087 4.087 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.170 0.830 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.832 0.724 -25.529 25.696 hybrid contribution 0.658 3.572 1.393 3.890 sum 3.489 4.296 -24.136 24.762 Atomic orbital electron populations 1.21740 0.93333 1.03068 1.01530 1.21815 0.97176 0.95885 0.88996 0.93345 1.21593 0.79355 1.02046 0.97496 1.46044 1.08039 1.60486 1.23875 1.20477 0.89647 0.77301 0.81983 1.90714 1.70077 1.46864 1.32955 1.19996 0.92015 1.01065 0.94345 0.87737 1.21836 1.02780 1.00570 0.94905 1.18313 1.00311 0.94210 0.97728 1.20019 0.99640 1.01203 0.94591 1.25490 1.07838 0.97865 1.04230 1.84248 1.42223 1.16117 1.21920 1.25383 1.05198 0.99809 1.00301 1.60106 1.34937 1.32159 1.02693 1.21797 1.01558 0.93903 0.91398 1.19682 0.84721 0.88242 0.84004 1.90576 1.53858 1.15782 1.84349 1.42208 1.60027 1.11046 1.09581 1.19428 1.40355 0.97939 0.85708 0.86259 1.25052 0.97440 0.98435 0.95248 1.69622 1.44929 1.36602 1.00819 0.86668 0.79365 0.84875 0.78431 1.19581 1.20172 1.19559 0.91417 0.92447 0.92036 0.90288 0.90849 0.76605 0.91254 0.91630 0.90954 0.84363 0.81987 0.82055 0.83001 0.93748 0.89255 0.79703 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.41 37.16 0.35 -1.01 16 2 C 0.07 0.75 2.81 -67.72 -0.19 0.56 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.05 16 4 C 0.12 1.25 5.31 -4.05 -0.02 1.23 16 5 N -0.73 -7.42 4.88 -60.30 -0.29 -7.71 16 6 C 0.52 6.01 7.06 -10.98 -0.08 5.93 16 7 O -0.53 -7.96 15.25 5.56 0.08 -7.87 16 8 C -0.05 -0.47 2.98 -92.92 -0.28 -0.74 16 9 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 10 C -0.14 -1.27 8.92 37.16 0.33 -0.94 16 11 C -0.09 -0.96 4.28 -106.25 -0.45 -1.42 16 12 C -0.12 -1.13 9.92 -41.21 -0.41 -1.54 16 13 C -0.22 -1.87 11.23 29.04 0.33 -1.55 16 14 S 0.09 0.85 23.34 -107.50 -2.51 -1.66 16 15 C -0.17 -1.85 9.27 29.04 0.27 -1.58 16 16 N -0.66 -9.32 5.93 -108.00 -0.64 -9.96 16 17 C 0.05 0.70 5.97 -4.98 -0.03 0.67 16 18 C 0.45 9.66 7.82 -10.99 -0.09 9.57 16 19 O -0.56 -14.54 15.78 5.54 0.09 -14.45 16 20 N -0.59 -13.48 5.09 -10.96 -0.06 -13.54 16 21 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 22 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 23 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 24 N -0.88 -25.26 13.96 55.50 0.77 -24.48 16 25 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.40 3.54 6.79 -40.82 -0.28 3.26 16 35 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 36 H 0.06 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.16 1.76 7.93 -52.49 -0.42 1.34 16 41 H 0.35 5.02 6.41 -39.29 -0.25 4.77 16 42 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 43 H 0.09 1.23 7.44 -51.93 -0.39 0.84 16 44 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 45 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -33.98 386.79 -8.46 -42.44 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -6.50 Total: 15.66 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.52 Total: 1.63 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.22 Total: -55.70 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.17 Total: -22.32 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.98 -8.46 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317263051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.748 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds