Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00071 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47152 * 300.00160 * 8 6 5 10 10 C 1.53002 * 109.47292 * 60.00215 * 8 6 5 11 11 C 1.50701 * 109.47064 * 180.02562 * 8 6 5 12 12 C 1.38416 * 122.54011 * 119.73912 * 11 8 6 13 13 C 1.33390 * 114.92394 * 179.76338 * 12 11 8 14 14 S 1.75883 * 109.58877 * 0.47228 * 13 12 11 15 15 C 1.33393 * 122.53548 * 300.02400 * 11 8 6 16 16 N 1.46898 * 109.47313 * 239.99764 * 2 1 3 17 17 C 1.46900 * 110.99992 * 84.99993 * 16 2 1 18 18 C 1.50693 * 109.47353 * 180.02562 * 17 16 2 19 19 O 1.21301 * 119.99654 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00227 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99653 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00549 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99713 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99908 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99993 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46899 * 90.00046 * 25 23 21 27 27 H 1.48494 * 109.47336 * 210.00434 * 25 23 21 28 28 H 1.48499 * 109.47079 * 330.00552 * 25 23 21 29 29 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 30 30 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 31 31 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47067 * 59.99892 * 10 8 6 36 36 H 1.08992 * 109.47461 * 180.02562 * 10 8 6 37 37 H 1.09004 * 109.46930 * 299.99975 * 10 8 6 38 38 H 1.08006 * 122.54164 * 359.97438 * 12 11 8 39 39 H 1.08003 * 125.21118 * 180.20820 * 13 12 11 40 40 H 1.07995 * 125.20327 * 359.97438 * 15 11 8 41 41 H 1.00897 * 111.00246 * 208.95472 * 16 2 1 42 42 H 1.09005 * 109.47227 * 300.00476 * 17 16 2 43 43 H 1.09006 * 109.46943 * 59.99937 * 17 16 2 44 44 H 0.96997 * 119.99819 * 359.97438 * 20 18 17 45 45 H 0.97000 * 119.99913 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5698 -1.8840 3.1396 8 6 5.6749 -1.5368 2.1308 9 1 5.9636 -2.0991 1.2428 10 6 6.2846 -0.1350 2.0674 11 6 6.1770 -2.2484 3.3606 12 6 6.8859 -3.4355 3.2967 13 6 7.2610 -3.9306 4.4771 14 16 6.6958 -2.8752 5.7656 15 6 5.9672 -1.7847 4.5937 16 7 2.0197 -0.6925 -1.1994 17 6 2.0825 0.2225 -2.3469 18 6 2.5874 -0.5218 -3.5559 19 8 2.8679 -1.6989 -3.4700 20 7 2.7283 0.1204 -4.7324 21 6 3.1882 -0.5568 -5.8322 22 1 3.4371 -1.6049 -5.7560 23 6 3.3340 0.1055 -7.0451 24 7 3.7743 -0.5437 -8.0994 25 14 2.9028 1.9182 -7.1772 26 1 4.1035 2.7363 -6.8696 27 1 2.4395 2.2177 -8.5558 28 1 1.8227 2.2418 -6.2108 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9824 -0.4622 0.4320 35 1 5.9959 0.4273 2.9554 36 1 7.3709 -0.2128 2.0235 37 1 5.9213 0.3793 1.1776 38 1 7.1208 -3.9223 2.3616 39 1 7.8218 -4.8424 4.6202 40 1 5.4323 -0.8782 4.8353 41 1 2.9173 -1.1205 -1.0287 42 1 1.0871 0.6163 -2.5525 43 1 2.7589 1.0462 -2.1181 44 1 2.5044 1.0617 -4.8010 45 1 3.8757 -0.0815 -8.9461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317263052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -34.602924 kcal Electronic energy + Delta-G solvation = -26491.323467 eV Core-core repulsion = 22635.666057 eV Total energy + Delta-G solvation = -3855.657410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45217 -38.77547 -38.09696 -36.95393 -34.28460 -33.93883 -33.19242 -31.73108 -30.96383 -29.01824 -26.97984 -26.35009 -25.44969 -23.84861 -23.03766 -20.75271 -20.52034 -19.47849 -18.92693 -18.41993 -18.01401 -17.33890 -16.37135 -16.17875 -15.76005 -15.48226 -15.13762 -14.95978 -14.70118 -14.22055 -13.91551 -13.83823 -13.34762 -13.22115 -13.02381 -12.90740 -12.74937 -12.72304 -12.56073 -12.42871 -12.23956 -12.06671 -11.98100 -11.83399 -11.67674 -11.59181 -11.24224 -10.98696 -10.90670 -10.63895 -10.01905 -9.91746 -9.62139 -9.26050 -8.94622 -8.65372 -8.58547 -8.29167 -8.21890 -6.35370 -3.87078 0.85000 1.47942 1.79501 2.41216 2.50316 2.98628 3.02290 3.06776 3.11537 3.67647 3.95215 4.06139 4.40479 4.45141 4.57705 4.71181 4.76379 4.93542 4.97202 5.03702 5.13024 5.16142 5.16898 5.36343 5.40627 5.45015 5.49042 5.50094 5.62624 5.66261 5.75966 5.77976 5.83883 5.85973 5.88221 6.13321 6.16559 6.27427 6.28469 6.98380 7.25186 7.43611 7.53320 8.03953 8.09646 8.54739 8.90347 9.37527 9.77089 10.77627 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.002152 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.248552 B =13009.251076 C =14037.098469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.731 5.731 6 C 0.521 3.479 7 O -0.530 6.530 8 C -0.053 4.053 9 H 0.110 0.890 10 C -0.140 4.140 11 C -0.091 4.091 12 C -0.123 4.123 13 C -0.216 4.216 14 S 0.088 5.912 15 C -0.174 4.174 16 N -0.664 5.664 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.349 0.651 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 4.278 24.712 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 H 0.067 0.933 4 C -0.005 4.005 5 N -0.384 5.384 6 C 0.306 3.694 7 O -0.406 6.406 8 C -0.077 4.077 9 H 0.128 0.872 10 C -0.198 4.198 11 C -0.103 4.103 12 C -0.154 4.154 13 C -0.351 4.351 14 S 0.351 5.649 15 C -0.310 4.310 16 N -0.299 5.299 17 C -0.086 4.086 18 C 0.233 3.767 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.177 0.823 41 H 0.170 0.830 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.101 2.850 26.666 26.996 hybrid contribution 0.483 2.150 -2.156 3.083 sum 3.584 5.000 24.510 25.270 Atomic orbital electron populations 1.21741 0.93347 1.03077 1.01521 1.21815 0.97167 0.95865 0.88997 0.93344 1.21595 0.79348 1.02063 0.97478 1.46038 1.08037 1.60392 1.23952 1.20451 0.89601 0.77194 0.82122 1.90715 1.70061 1.46723 1.33086 1.20012 0.91637 0.98447 0.97620 0.87235 1.21798 1.01883 0.93520 1.02555 1.18313 1.01779 0.96384 0.93828 1.20077 1.00372 0.95977 0.98951 1.25502 1.09015 1.05124 0.95492 1.84211 1.52285 1.17535 1.10870 1.25317 1.05947 1.04469 0.95273 1.60100 1.34962 1.32162 1.02697 1.21794 1.01561 0.93889 0.91381 1.19686 0.84699 0.88234 0.84040 1.90579 1.53818 1.15793 1.84383 1.42208 1.59977 1.11088 1.09593 1.19429 1.40151 0.98003 0.85856 0.86262 1.25050 0.97449 0.98435 0.95233 1.69618 1.44971 1.36542 1.00837 0.86672 0.78970 0.85097 0.78642 1.19651 1.20138 1.19486 0.92450 0.92042 0.91413 0.90856 0.90280 0.76595 0.91999 0.90916 0.91640 0.84092 0.81894 0.82270 0.82981 0.89270 0.93728 0.79702 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.41 37.16 0.35 -1.02 16 2 C 0.07 0.75 2.81 -67.71 -0.19 0.56 16 3 H 0.05 0.45 7.80 -51.92 -0.40 0.05 16 4 C 0.12 1.25 5.31 -4.04 -0.02 1.22 16 5 N -0.73 -7.39 4.88 -60.29 -0.29 -7.68 16 6 C 0.52 6.00 7.06 -10.98 -0.08 5.93 16 7 O -0.53 -7.95 15.23 5.56 0.08 -7.87 16 8 C -0.05 -0.49 2.97 -92.92 -0.28 -0.77 16 9 H 0.11 0.91 8.03 -51.93 -0.42 0.49 16 10 C -0.14 -1.00 8.92 37.16 0.33 -0.67 16 11 C -0.09 -0.93 4.29 -106.25 -0.46 -1.39 16 12 C -0.12 -1.19 9.92 -41.21 -0.41 -1.60 16 13 C -0.22 -1.92 11.23 29.04 0.33 -1.59 16 14 S 0.09 0.80 23.34 -107.50 -2.51 -1.71 16 15 C -0.17 -1.78 9.26 29.04 0.27 -1.52 16 16 N -0.66 -9.39 5.93 -107.99 -0.64 -10.03 16 17 C 0.05 0.71 5.96 -4.98 -0.03 0.68 16 18 C 0.45 9.70 7.82 -10.99 -0.09 9.62 16 19 O -0.56 -14.65 15.78 5.54 0.09 -14.56 16 20 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 21 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.29 13.96 55.50 0.77 -24.51 16 25 Si 0.88 18.85 27.74 -169.99 -4.71 14.14 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.52 6.79 -40.82 -0.28 3.24 16 35 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 7.57 -51.93 -0.39 0.01 16 38 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.16 1.54 7.95 -52.49 -0.42 1.13 16 41 H 0.35 5.08 6.41 -39.29 -0.25 4.82 16 42 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 43 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 44 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -34.21 386.81 -8.46 -42.67 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.51 Total: 15.43 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.52 Total: 1.88 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.22 Total: -55.81 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.17 Total: -22.43 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.71 Total: 14.14 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.21 -8.46 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317263052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.068 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds