Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47276 * 2 1 4 4 C 1.50701 * 109.46985 * 120.00072 * 2 1 3 5 5 O 1.21280 * 120.00379 * 120.00324 * 4 2 1 6 6 N 1.34783 * 120.00085 * 299.99609 * 4 2 1 7 7 C 1.46492 * 120.00112 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47123 * 180.02562 * 7 6 4 9 9 H 1.09007 * 109.46814 * 295.00313 * 8 7 6 10 10 C 1.53001 * 109.47237 * 175.00409 * 8 7 6 11 11 N 1.46897 * 109.46955 * 55.00218 * 8 7 6 12 12 C 1.46901 * 110.99852 * 204.99926 * 11 8 7 13 13 C 1.50700 * 109.47048 * 179.97438 * 12 11 8 14 14 O 1.21294 * 120.00020 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99729 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99651 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00173 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99944 * 179.97438 * 16 15 13 19 19 N 1.31412 * 119.99825 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00070 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46780 * 60.00204 * 20 18 16 22 22 H 1.48495 * 109.47122 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47140 * 300.00604 * 20 18 16 24 24 C 1.50697 * 109.47070 * 239.99752 * 2 1 3 25 25 C 1.38421 * 122.53935 * 119.99754 * 24 2 1 26 26 C 1.33388 * 114.92066 * 179.72463 * 25 24 2 27 27 S 1.75885 * 109.59458 * 0.27968 * 26 25 24 28 28 C 1.33395 * 122.53872 * 300.25814 * 24 2 1 29 29 H 1.09003 * 109.47012 * 300.00262 * 1 2 3 30 30 H 1.08993 * 109.47394 * 60.00009 * 1 2 3 31 31 H 1.09006 * 109.47505 * 180.02562 * 1 2 3 32 32 H 0.96997 * 119.99389 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47563 * 300.00500 * 7 6 4 34 34 H 1.09000 * 109.47045 * 60.00519 * 7 6 4 35 35 H 1.09006 * 109.46861 * 300.00172 * 10 8 7 36 36 H 1.08999 * 109.46961 * 59.99916 * 10 8 7 37 37 H 1.08994 * 109.46979 * 179.97438 * 10 8 7 38 38 H 1.00905 * 110.99909 * 328.94966 * 11 8 7 39 39 H 1.08995 * 109.47572 * 300.00329 * 12 11 8 40 40 H 1.09006 * 109.46862 * 60.00347 * 12 11 8 41 41 H 0.96999 * 120.00067 * 0.02562 * 15 13 12 42 42 H 0.97005 * 120.00024 * 180.02562 * 19 18 16 43 43 H 1.08002 * 122.54201 * 0.02562 * 25 24 2 44 44 H 1.08004 * 125.20514 * 180.24987 * 26 25 24 45 45 H 1.07998 * 125.20353 * 359.97100 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 6 1.6849 -0.2193 4.9000 9 1 2.1188 0.7796 4.9459 10 6 2.0902 -1.0092 6.1461 11 7 0.2208 -0.1150 4.8411 12 6 -0.2586 1.0208 5.6399 13 6 -1.7613 1.0960 5.5550 14 8 -2.3728 0.2830 4.8944 15 7 -2.4258 2.0659 6.2139 16 6 -3.7929 2.1340 6.1371 17 1 -4.3374 1.4101 5.5488 18 6 -4.4781 3.1336 6.8168 19 7 -3.8156 4.0140 7.5329 20 14 -6.3408 3.2268 6.7115 21 1 -6.9297 1.9682 7.2354 22 1 -6.8254 4.3746 7.5195 23 1 -6.7479 3.4119 5.2954 24 6 2.0323 -0.7104 -1.2304 25 6 2.8305 -0.0890 -2.1752 26 6 3.1926 -0.8614 -3.2007 27 16 2.5015 -2.4666 -3.0030 28 6 1.7372 -1.9843 -1.4941 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.1488 0.5385 2.5435 33 1 1.8326 -1.9680 3.6510 34 1 3.2855 -0.9397 3.6506 35 1 1.6563 -2.0081 6.1001 36 1 3.1766 -1.0866 6.1898 37 1 1.7269 -0.4954 7.0360 38 1 -0.0987 -0.0461 3.8865 39 1 0.0407 0.8861 6.6793 40 1 0.1734 1.9443 5.2542 41 1 -1.9367 2.7158 6.7425 42 1 -4.2939 4.7117 8.0078 43 1 3.1409 0.9416 -2.0863 44 1 3.8146 -0.5487 -4.0265 45 1 1.1264 -2.6232 -0.8735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317263053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -41.953992 kcal Electronic energy + Delta-G solvation = -26510.770601 eV Core-core repulsion = 22654.794425 eV Total energy + Delta-G solvation = -3855.976176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41180 -38.63508 -38.01887 -36.86303 -34.22427 -33.87704 -33.12971 -31.33211 -30.80435 -28.97978 -26.86187 -26.19673 -25.39406 -24.01327 -23.02070 -20.69436 -20.46181 -19.37579 -18.85518 -17.99558 -17.96010 -17.31441 -16.33121 -16.19068 -15.63164 -15.32004 -15.10361 -14.89469 -14.50627 -14.06820 -13.98171 -13.79846 -13.44423 -13.29905 -12.98371 -12.80107 -12.66471 -12.57602 -12.52632 -12.35449 -11.93635 -11.84863 -11.76838 -11.69802 -11.59794 -11.44384 -11.09061 -10.91686 -10.85573 -10.47419 -10.25176 -9.87546 -9.54139 -9.21684 -8.93052 -8.56789 -8.52048 -8.17200 -8.00722 -6.45738 -3.86742 0.86901 1.49681 1.81657 2.43660 2.51978 3.11593 3.17168 3.23410 3.27586 3.85054 4.00792 4.24289 4.45053 4.51479 4.64001 4.82349 4.93943 4.97208 5.01241 5.13167 5.16606 5.21156 5.26455 5.42610 5.51228 5.54249 5.55223 5.64999 5.72476 5.74393 5.84156 5.91966 5.94523 5.95746 6.15454 6.18724 6.22887 6.29440 6.34318 7.11071 7.29545 7.51132 7.53404 8.01541 8.07617 8.56476 9.13529 9.49441 10.00605 10.71748 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.002168 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.500734 B =12910.024136 C =14288.781743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 H 0.105 0.895 4 C 0.520 3.480 5 O -0.531 6.531 6 N -0.730 5.730 7 C 0.119 3.881 8 C 0.071 3.929 9 H 0.049 0.951 10 C -0.138 4.138 11 N -0.664 5.664 12 C 0.049 3.951 13 C 0.439 3.561 14 O -0.583 6.583 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.093 4.093 25 C -0.124 4.124 26 C -0.219 4.219 27 S 0.090 5.910 28 C -0.171 4.171 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.347 0.653 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.789 -5.067 -15.007 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 H 0.123 0.877 4 C 0.306 3.694 5 O -0.407 6.407 6 N -0.384 5.384 7 C -0.005 4.005 8 C -0.039 4.039 9 H 0.066 0.934 10 C -0.196 4.196 11 N -0.299 5.299 12 C -0.084 4.084 13 C 0.224 3.776 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.105 4.105 25 C -0.154 4.154 26 C -0.354 4.354 27 S 0.354 5.646 28 C -0.307 4.307 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.168 0.832 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.157 0.843 44 H 0.180 0.820 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 15.765 -7.986 -15.779 23.691 hybrid contribution -0.637 3.040 0.792 3.206 sum 15.128 -4.946 -14.987 21.861 Atomic orbital electron populations 1.21831 0.91401 1.03444 1.03392 1.19994 0.97862 0.99822 0.89763 0.87724 1.20468 0.80033 0.84611 0.84322 1.90712 1.37396 1.25939 1.86646 1.46043 1.54091 1.32377 1.05850 1.21596 0.99065 0.97282 0.82530 1.21813 0.88820 0.98328 0.94936 0.93359 1.21735 1.00123 1.01159 0.96620 1.60120 1.07657 1.44578 1.17529 1.21760 0.95407 0.91629 0.99558 1.19786 0.88236 0.84390 0.85184 1.90531 1.68995 1.42130 1.45038 1.41859 1.07541 1.26747 1.43722 1.19649 0.81586 1.12980 1.28771 0.87962 1.25267 1.00683 0.95667 0.96278 1.69602 1.36734 1.16515 1.31395 0.85917 0.82130 0.77782 0.78396 1.19856 1.20968 1.19901 1.18318 1.01198 0.94128 0.96876 1.20023 0.99944 1.01238 0.94234 1.25488 1.08537 0.96856 1.04528 1.84240 1.47318 1.13161 1.19889 1.25379 1.06215 0.99083 1.00015 0.91239 0.90992 0.91666 0.76571 0.90356 0.90890 0.91514 0.92510 0.91975 0.83176 0.89395 0.93874 0.77466 0.91785 0.84346 0.81989 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.92 37.16 0.33 -0.96 16 2 C -0.05 -0.48 2.97 -92.93 -0.28 -0.76 16 3 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 4 C 0.52 6.18 7.06 -10.98 -0.08 6.10 16 5 O -0.53 -8.13 15.24 5.56 0.08 -8.04 16 6 N -0.73 -7.76 4.88 -60.30 -0.29 -8.05 16 7 C 0.12 1.31 5.31 -4.04 -0.02 1.29 16 8 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 9 H 0.05 0.50 7.80 -51.92 -0.40 0.10 16 10 C -0.14 -1.47 9.41 37.16 0.35 -1.12 16 11 N -0.66 -9.87 5.93 -107.99 -0.64 -10.51 16 12 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 13 C 0.44 9.91 7.82 -10.98 -0.09 9.82 16 14 O -0.58 -15.25 15.78 5.55 0.09 -15.16 16 15 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 16 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 17 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 20 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C -0.09 -0.97 4.28 -106.25 -0.45 -1.43 16 25 C -0.12 -1.14 9.92 -41.21 -0.41 -1.55 16 26 C -0.22 -1.90 11.23 29.04 0.33 -1.57 16 27 S 0.09 0.85 23.34 -107.50 -2.51 -1.66 16 28 C -0.17 -1.87 9.27 29.04 0.27 -1.60 16 29 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 7.73 -51.93 -0.40 0.24 16 32 H 0.40 3.77 6.79 -40.82 -0.28 3.49 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 38 H 0.35 5.25 6.41 -39.29 -0.25 5.00 16 39 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 40 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 41 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.16 1.77 7.93 -52.49 -0.42 1.36 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -32.62 389.92 -8.81 -41.43 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -6.55 Total: 15.77 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.51 Total: 1.80 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.27 Total: -55.67 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.20 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.62 -8.81 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317263053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.523 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds