Wall clock time and date at job start Sat Apr 11 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 C 1.53000 * 109.47340 * 239.99999 * 2 1 3 5 5 N 1.46496 * 109.46986 * 185.00262 * 4 2 1 6 6 C 1.34784 * 119.99741 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.33391 * 125.19937 * 90.00083 * 10 9 8 12 12 C 1.38423 * 114.92045 * 179.97438 * 11 10 9 13 13 C 1.33390 * 114.91979 * 359.97438 * 12 11 10 14 14 S 1.75878 * 125.20693 * 269.69344 * 10 9 8 15 15 N 1.46903 * 109.46891 * 119.99962 * 2 1 3 16 16 C 1.46902 * 110.99999 * 275.00084 * 15 2 1 17 17 C 1.50693 * 109.47058 * 180.02562 * 16 15 2 18 18 O 1.21291 * 120.00239 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00132 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00541 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99797 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00228 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00290 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47063 * 89.99716 * 24 22 20 26 26 H 1.48502 * 109.47189 * 209.99803 * 24 22 20 27 27 H 1.48493 * 109.47457 * 329.99709 * 24 22 20 28 28 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47269 * 299.99696 * 1 2 3 30 30 H 1.08999 * 109.46880 * 60.00646 * 1 2 3 31 31 H 1.09000 * 109.47214 * 64.99568 * 4 2 1 32 32 H 1.09000 * 109.46955 * 304.99783 * 4 2 1 33 33 H 0.96998 * 120.00681 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 35 35 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 36 36 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 37 37 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 38 38 H 1.07995 * 122.54106 * 359.95411 * 11 10 9 39 39 H 1.08001 * 122.53959 * 180.02562 * 12 11 10 40 40 H 1.07998 * 125.20163 * 180.02562 * 13 12 11 41 41 H 1.00901 * 110.99850 * 151.04835 * 15 2 1 42 42 H 1.08998 * 109.46937 * 300.00113 * 16 15 2 43 43 H 1.09001 * 109.46871 * 59.99969 * 16 15 2 44 44 H 0.97004 * 120.00214 * 359.97438 * 19 17 16 45 45 H 0.97000 * 119.99873 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8833 -3.1399 8 6 5.6751 -1.5360 -2.1309 9 6 6.1851 -2.2573 -3.3801 10 6 7.6872 -2.3644 -3.3202 11 6 8.3648 -3.3752 -2.7738 12 6 9.7424 -3.2556 -2.8371 13 6 10.1835 -2.1480 -3.4354 14 16 8.8148 -1.1796 -3.9668 15 7 2.0197 -0.6925 1.1995 16 6 2.0824 0.2226 2.3469 17 6 2.5884 -0.5215 3.5557 18 8 2.8687 -1.6985 3.4700 19 7 2.7285 0.1205 4.7324 20 6 3.1893 -0.5562 5.8321 21 1 3.4397 -1.6040 5.7555 22 6 3.3332 0.1057 7.0453 23 7 3.0281 1.3805 7.1386 24 14 3.9604 -0.8167 8.5437 25 1 5.4414 -0.7215 8.5995 26 1 3.3793 -0.2184 9.7723 27 1 3.5593 -2.2434 8.4506 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.7517 -0.1584 -2.1370 32 1 1.6055 -1.7198 -1.2951 33 1 3.9825 -0.4622 -0.4318 34 1 5.9638 -2.0989 -1.2434 35 1 6.1095 -0.5372 -2.0848 36 1 5.8965 -1.6946 -4.2679 37 1 5.7509 -3.2560 -3.4257 38 1 7.8757 -4.2224 -2.3164 39 1 10.4095 -4.0028 -2.4334 40 1 11.2222 -1.8876 -3.5756 41 1 2.9173 -1.1205 1.0288 42 1 2.7588 1.0462 2.1183 43 1 1.0870 0.6163 2.5525 44 1 2.5040 1.0617 4.8012 45 1 3.1290 1.8425 7.9855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317289296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:45 Heat of formation + Delta-G solvation = -49.244618 kcal Electronic energy + Delta-G solvation = -25757.749888 eV Core-core repulsion = 21901.457566 eV Total energy + Delta-G solvation = -3856.292322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04891 -38.51765 -38.15689 -37.03031 -34.18118 -33.95032 -33.74871 -31.36486 -30.90759 -29.24284 -26.89682 -26.28139 -24.83869 -23.94421 -22.71140 -20.72573 -20.43721 -19.51997 -19.34024 -17.98568 -17.73607 -17.02076 -16.38181 -16.18905 -15.82005 -15.66315 -15.41032 -15.06700 -14.52737 -14.18125 -14.04356 -13.80862 -13.54855 -13.36451 -13.05871 -12.87254 -12.74045 -12.57432 -12.43187 -12.24986 -12.20609 -11.93408 -11.76677 -11.68150 -11.45188 -11.34603 -11.10783 -10.96085 -10.89464 -10.42311 -10.25520 -10.06184 -9.55047 -9.24920 -8.92908 -8.75669 -8.52155 -8.17356 -8.00637 -6.45737 -3.86692 0.70159 1.34681 1.71995 2.46018 2.47893 2.99748 3.14932 3.24140 3.30059 3.85101 4.00544 4.23880 4.34470 4.61618 4.64903 4.75287 4.79974 4.93429 4.94667 5.13667 5.17885 5.21196 5.26056 5.29086 5.35309 5.49429 5.53074 5.64873 5.72339 5.74208 5.76595 5.87859 5.91899 5.95384 6.01939 6.14793 6.21446 6.22596 6.33367 7.10863 7.25948 7.51476 7.53124 8.01872 8.02830 8.56559 9.13759 9.49576 10.00692 10.71886 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.002221 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.033679 B =12601.731624 C =15061.045508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.731 5.731 6 C 0.517 3.483 7 O -0.542 6.542 8 C -0.139 4.139 9 C -0.032 4.032 10 C -0.172 4.172 11 C -0.139 4.139 12 C -0.132 4.132 13 C -0.217 4.217 14 S 0.092 5.908 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.439 3.561 18 O -0.583 6.583 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.347 0.653 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -0.418 -21.253 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.384 5.384 6 C 0.304 3.696 7 O -0.419 6.419 8 C -0.179 4.179 9 C -0.072 4.072 10 C -0.289 4.289 11 C -0.169 4.169 12 C -0.162 4.162 13 C -0.352 4.352 14 S 0.355 5.645 15 N -0.299 5.299 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.848 -0.283 -22.411 23.436 hybrid contribution 1.439 -0.307 1.923 2.421 sum 8.287 -0.590 -20.488 22.109 Atomic orbital electron populations 1.21738 0.93378 1.02985 1.01556 1.21814 0.97164 0.95910 0.89026 0.93352 1.21608 0.79316 1.02049 0.97603 1.46088 1.08204 1.60222 1.23923 1.20586 0.89924 0.77140 0.81987 1.90706 1.70500 1.47469 1.33259 1.21715 0.91918 1.03490 1.00809 1.19853 0.86785 1.02852 0.97668 1.24530 0.99373 0.98821 1.06160 1.20206 0.93650 1.00158 1.02893 1.20208 0.95495 0.98629 1.01913 1.25614 1.02337 0.99627 1.07672 1.84319 0.96737 1.24872 1.58543 1.60123 1.34807 1.32280 1.02710 1.21757 1.01512 0.93777 0.91289 1.19788 0.85118 0.88220 0.84459 1.90531 1.55359 1.16073 1.84738 1.41866 1.57616 1.12455 1.07969 1.19699 1.39953 0.96480 0.86797 0.87910 1.25266 0.97602 0.95790 0.99252 1.69609 1.48505 1.08899 1.27247 0.85858 0.78769 0.79547 0.80132 1.20399 1.20895 1.19377 0.91500 0.91972 0.92485 0.90840 0.90291 0.76477 0.88026 0.88628 0.89965 0.88985 0.84085 0.84261 0.81995 0.83163 0.93859 0.89382 0.77462 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.42 37.16 0.35 -1.12 16 2 C 0.07 0.80 2.81 -67.71 -0.19 0.61 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.29 5.31 -4.04 -0.02 1.27 16 5 N -0.73 -7.68 4.99 -60.30 -0.30 -7.98 16 6 C 0.52 5.87 7.83 -10.98 -0.09 5.78 16 7 O -0.54 -7.95 15.98 5.56 0.09 -7.86 16 8 C -0.14 -1.20 5.68 -27.89 -0.16 -1.36 16 9 C -0.03 -0.29 5.00 -27.88 -0.14 -0.43 16 10 C -0.17 -1.53 5.76 -36.00 -0.21 -1.74 16 11 C -0.14 -1.21 10.05 -41.21 -0.41 -1.62 16 12 C -0.13 -1.07 10.18 -41.21 -0.42 -1.49 16 13 C -0.22 -1.69 11.23 29.04 0.33 -1.36 16 14 S 0.09 0.77 23.33 -107.50 -2.51 -1.74 16 15 N -0.66 -9.97 5.93 -107.99 -0.64 -10.61 16 16 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 17 C 0.44 10.00 7.82 -10.99 -0.09 9.92 16 18 O -0.58 -15.41 15.78 5.55 0.09 -15.33 16 19 N -0.56 -13.88 5.29 -10.97 -0.06 -13.94 16 20 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 24 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.75 7.37 -40.82 -0.30 3.45 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.35 5.32 6.41 -39.29 -0.25 5.07 16 42 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.09 1.36 7.44 -51.93 -0.39 0.98 16 44 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -32.76 394.56 -9.63 -42.39 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -6.63 Total: 15.39 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.32 Total: 1.39 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.27 Total: -55.92 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.18 Total: -23.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.76 -9.63 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317289296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.853 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds