Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46896 * 2 1 4 4 C 1.52997 * 109.47227 * 120.00110 * 2 1 3 5 5 N 1.46496 * 109.47194 * 174.99954 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 6 11 11 C 1.33382 * 125.20677 * 90.00103 * 10 9 8 12 12 C 1.38420 * 114.92515 * 179.97438 * 11 10 9 13 13 C 1.33394 * 114.91627 * 0.02562 * 12 11 10 14 14 S 1.75875 * 109.59538 * 359.75485 * 13 12 11 15 15 N 1.46897 * 109.47277 * 240.00544 * 2 1 3 16 16 C 1.46899 * 111.00484 * 84.99564 * 15 2 1 17 17 C 1.50693 * 109.47522 * 179.97438 * 16 15 2 18 18 O 1.21295 * 119.99866 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00074 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99857 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00245 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99895 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00004 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99974 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47447 * 89.99519 * 24 22 20 26 26 H 1.48502 * 109.46885 * 209.99816 * 24 22 20 27 27 H 1.48506 * 109.46921 * 329.99227 * 24 22 20 28 28 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46986 * 299.99785 * 1 2 3 30 30 H 1.08996 * 109.46934 * 59.99737 * 1 2 3 31 31 H 1.09002 * 109.47045 * 55.00081 * 4 2 1 32 32 H 1.09001 * 109.47375 * 295.00005 * 4 2 1 33 33 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 34 34 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 35 35 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 36 36 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 37 37 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 38 38 H 1.08005 * 122.53953 * 359.95474 * 11 10 9 39 39 H 1.07998 * 122.54488 * 180.02562 * 12 11 10 40 40 H 1.08001 * 125.19831 * 180.02562 * 13 12 11 41 41 H 1.00902 * 110.99852 * 208.95267 * 15 2 1 42 42 H 1.09001 * 109.47128 * 300.00427 * 16 15 2 43 43 H 1.09003 * 109.47164 * 59.99884 * 16 15 2 44 44 H 0.96994 * 120.00344 * 0.02562 * 19 17 16 45 45 H 0.96994 * 119.99839 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1398 8 6 5.6751 -1.5359 2.1310 9 6 6.1851 -2.2573 3.3801 10 6 7.6872 -2.3643 3.3203 11 6 8.5423 -1.4630 3.8056 12 6 9.8796 -1.7767 3.6350 13 6 10.1105 -2.9327 3.0107 14 16 8.5807 -3.7002 2.6056 15 7 2.0197 -0.6924 -1.1995 16 6 2.0825 0.2227 -2.3469 17 6 2.5885 -0.5213 -3.5557 18 8 2.8689 -1.6982 -3.4700 19 7 2.7286 0.1209 -4.7324 20 6 3.1895 -0.5559 -5.8320 21 1 3.4400 -1.6036 -5.7555 22 6 3.3345 0.1063 -7.0450 23 7 3.7758 -0.5425 -8.0991 24 14 2.9020 1.9187 -7.1772 25 1 4.1020 2.7377 -6.8701 26 1 2.4382 2.2176 -8.5559 27 1 1.8217 2.2416 -6.2106 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1370 33 1 3.9825 -0.4621 0.4318 34 1 6.1094 -0.5372 2.0849 35 1 5.9638 -2.0989 1.2433 36 1 5.8964 -1.6946 4.2679 37 1 5.7508 -3.2559 3.4258 38 1 8.2160 -0.5569 4.2943 39 1 10.6758 -1.1344 3.9812 40 1 11.0875 -3.3376 2.7916 41 1 2.9174 -1.1203 -1.0288 42 1 1.0871 0.6164 -2.5525 43 1 2.7588 1.0464 -2.1182 44 1 2.5041 1.0620 -4.8011 45 1 3.8773 -0.0802 -8.9457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317289299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -41.803899 kcal Electronic energy + Delta-G solvation = -25807.067137 eV Core-core repulsion = 21951.097469 eV Total energy + Delta-G solvation = -3855.969668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08862 -38.67495 -38.18465 -37.13430 -34.23612 -33.96585 -33.81391 -31.73847 -31.08608 -29.26239 -27.00025 -26.41016 -24.85419 -23.78041 -22.72563 -20.78012 -20.48856 -19.52653 -19.45674 -18.46336 -17.76304 -17.02941 -16.37662 -16.27232 -15.91292 -15.60703 -15.44635 -15.23123 -14.78996 -14.24957 -13.96857 -13.86685 -13.45645 -13.22663 -13.09895 -12.93748 -12.76318 -12.72502 -12.49013 -12.28853 -12.23786 -12.19787 -12.06657 -11.86230 -11.60727 -11.35194 -11.23991 -10.98358 -10.93068 -10.63538 -10.09311 -10.01547 -9.61860 -9.29152 -8.93413 -8.74480 -8.65327 -8.29225 -8.21633 -6.35040 -3.86776 0.70490 1.36195 1.74313 2.43365 2.45721 2.95663 2.98928 3.02669 3.11769 3.67850 3.94613 4.06450 4.31325 4.55473 4.63737 4.71241 4.73367 4.79338 4.89823 5.03675 5.15593 5.16880 5.17894 5.24725 5.32904 5.43718 5.50034 5.50910 5.62630 5.66532 5.74589 5.77639 5.85884 5.86033 5.87828 6.00627 6.12261 6.20738 6.26658 6.98097 7.21796 7.43338 7.53635 7.99447 8.09957 8.55052 8.90652 9.37828 9.77343 10.77992 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.002263 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.230077 B =12371.354042 C =14526.108793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.517 3.483 7 O -0.541 6.541 8 C -0.139 4.139 9 C -0.032 4.032 10 C -0.173 4.173 11 C -0.141 4.141 12 C -0.135 4.135 13 C -0.217 4.217 14 S 0.103 5.897 15 N -0.664 5.664 16 C 0.047 3.953 17 C 0.448 3.552 18 O -0.564 6.564 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.349 0.651 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 4.027 23.893 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.385 5.385 6 C 0.304 3.696 7 O -0.419 6.419 8 C -0.179 4.179 9 C -0.072 4.072 10 C -0.291 4.291 11 C -0.171 4.171 12 C -0.165 4.165 13 C -0.353 4.353 14 S 0.367 5.633 15 N -0.299 5.299 16 C -0.086 4.086 17 C 0.233 3.767 18 O -0.446 6.446 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.235 0.765 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.909 1.281 23.511 24.052 hybrid contribution 1.211 3.564 0.018 3.765 sum 6.121 4.845 23.529 24.790 Atomic orbital electron populations 1.21743 0.93330 1.03082 1.01539 1.21816 0.97187 0.95877 0.88994 0.93343 1.21606 0.79363 1.02099 0.97528 1.46084 1.08165 1.60311 1.23951 1.20593 0.89944 0.77101 0.81974 1.90708 1.70495 1.47384 1.33264 1.21718 0.91871 1.03613 1.00734 1.19849 0.86866 1.02468 0.97989 1.24546 0.99575 0.98774 1.06171 1.20143 0.92335 1.00964 1.03705 1.20172 0.97016 0.97486 1.01868 1.25652 1.01502 1.00532 1.07611 1.84490 0.97306 1.23000 1.58497 1.60103 1.34962 1.32173 1.02703 1.21793 1.01555 0.93892 0.91381 1.19685 0.84706 0.88235 0.84038 1.90577 1.53827 1.15785 1.84376 1.42207 1.59956 1.11121 1.09585 1.19432 1.40109 0.98053 0.85858 0.86259 1.25049 0.97442 0.98435 0.95224 1.69622 1.44962 1.36551 1.00854 0.86671 0.78973 0.85093 0.78642 1.19653 1.20132 1.19480 0.91403 0.92436 0.92031 0.90231 0.90794 0.76510 0.88420 0.88205 0.89171 0.89790 0.84332 0.84387 0.81969 0.82976 0.89256 0.93733 0.79700 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.42 37.16 0.35 -1.02 16 2 C 0.07 0.75 2.81 -67.71 -0.19 0.56 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.05 16 4 C 0.12 1.22 5.31 -4.05 -0.02 1.20 16 5 N -0.73 -7.32 4.99 -60.30 -0.30 -7.62 16 6 C 0.52 5.69 7.83 -10.98 -0.09 5.61 16 7 O -0.54 -7.78 15.98 5.56 0.09 -7.69 16 8 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 9 C -0.03 -0.28 5.00 -27.88 -0.14 -0.42 16 10 C -0.17 -1.53 5.76 -36.00 -0.21 -1.74 16 11 C -0.14 -1.15 10.05 -41.21 -0.41 -1.56 16 12 C -0.13 -1.04 10.18 -41.21 -0.42 -1.46 16 13 C -0.22 -1.72 11.23 29.04 0.33 -1.40 16 14 S 0.10 0.92 23.33 -107.50 -2.51 -1.59 16 15 N -0.66 -9.44 5.93 -108.00 -0.64 -10.08 16 16 C 0.05 0.71 5.96 -4.98 -0.03 0.68 16 17 C 0.45 9.77 7.82 -10.99 -0.09 9.68 16 18 O -0.56 -14.73 15.78 5.54 0.09 -14.64 16 19 N -0.59 -13.61 5.09 -10.96 -0.06 -13.66 16 20 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 24 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 3.51 7.37 -40.82 -0.30 3.20 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.35 5.10 6.41 -39.29 -0.25 4.85 16 42 H 0.09 1.25 7.44 -51.93 -0.39 0.86 16 43 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 44 H 0.37 7.46 5.76 -40.82 -0.24 7.23 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -34.17 391.44 -9.28 -43.45 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.59 Total: 15.13 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.32 Total: 1.19 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.22 Total: -55.99 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.18 Total: -22.33 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.17 -9.28 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317289299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.650 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds