Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46745 * 2 1 4 4 C 1.52997 * 109.47072 * 120.00624 * 2 1 3 5 5 C 1.53004 * 109.47000 * 184.99738 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21633 * 120.00238 * 359.72097 * 7 6 5 9 9 C 1.47263 * 119.99630 * 179.72408 * 7 6 5 10 10 C 1.35209 * 123.14030 * 180.02562 * 9 7 6 11 11 S 1.70943 * 108.82690 * 179.97438 * 10 9 7 12 12 C 1.70763 * 91.12969 * 359.97438 * 11 10 9 13 13 C 1.50701 * 124.72187 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.86971 * 164.27426 * 13 12 11 15 15 C 1.54097 * 109.88058 * 285.28248 * 13 12 11 16 16 C 1.54811 * 104.19051 * 121.44900 * 15 13 12 17 17 C 1.55001 * 102.09003 * 20.88306 * 16 15 13 18 18 O 1.43742 * 109.87840 * 43.26818 * 13 12 11 19 19 N 1.28646 * 110.56016 * 359.76899 * 12 11 10 20 20 N 1.46496 * 109.46451 * 240.00353 * 2 1 3 21 21 C 1.36939 * 120.00442 * 85.00577 * 20 2 1 22 22 H 1.08006 * 119.99454 * 359.97438 * 21 20 2 23 23 C 1.38807 * 120.00698 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99442 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00501 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46923 * 89.99731 * 25 23 21 27 27 H 1.48499 * 109.47327 * 209.99863 * 25 23 21 28 28 H 1.48506 * 109.46911 * 330.00183 * 25 23 21 29 29 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47019 * 299.99619 * 1 2 3 31 31 H 1.08996 * 109.47178 * 59.99299 * 1 2 3 32 32 H 1.08995 * 109.47672 * 65.00068 * 4 2 1 33 33 H 1.09006 * 109.46819 * 304.99498 * 4 2 1 34 34 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 35 35 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 36 36 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 37 37 H 1.07995 * 125.58950 * 0.02562 * 10 9 7 38 38 H 1.09000 * 110.49214 * 240.13163 * 15 13 12 39 39 H 1.09000 * 110.48672 * 2.77859 * 15 13 12 40 40 H 1.09002 * 110.90656 * 139.07815 * 16 15 13 41 41 H 1.08999 * 110.91369 * 262.65198 * 16 15 13 42 42 H 1.08999 * 110.61371 * 81.47544 * 17 16 15 43 43 H 1.08996 * 110.61950 * 204.47270 * 17 16 15 44 44 H 0.97008 * 120.00047 * 264.99289 * 20 2 1 45 45 H 0.97003 * 119.99361 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3135 6 7 4.0532 -1.3037 2.5099 7 6 5.3736 -1.3345 2.7783 8 8 6.1603 -0.7938 2.0245 9 6 5.8640 -2.0231 3.9841 10 6 7.1731 -2.0927 4.3148 11 16 7.3278 -2.9696 5.7740 12 6 5.6368 -3.1921 5.8589 13 6 4.9230 -3.9358 6.9582 14 1 3.8588 -3.7013 6.9336 15 6 5.1294 -5.4529 6.7842 16 6 5.8016 -5.8985 8.1057 17 6 5.4159 -4.7479 9.0701 18 8 5.4748 -3.5699 8.2340 19 7 5.0565 -2.6319 4.8567 20 7 2.0182 -0.6905 -1.1962 21 6 2.1490 -0.0074 -2.3758 22 1 1.8919 1.0405 -2.4243 23 6 2.6121 -0.6615 -3.5091 24 7 2.9259 -1.9384 -3.4499 25 14 2.7899 0.2702 -5.1183 26 1 4.1518 0.8561 -5.2032 27 1 2.5801 -0.6614 -6.2556 28 1 1.7791 1.3568 -5.1755 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7517 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8532 0.4369 1.3572 35 1 3.9994 -1.0729 0.4258 36 1 3.4258 -1.7346 3.1113 37 1 7.9877 -1.6638 3.7501 38 1 4.1712 -5.9561 6.6550 39 1 5.7844 -5.6541 5.9364 40 1 5.3918 -6.8482 8.4496 41 1 6.8835 -5.9630 7.9895 42 1 4.4067 -4.8925 9.4557 43 1 6.1334 -4.6754 9.8874 44 1 2.2490 -1.6318 -1.1527 45 1 3.2491 -2.3956 -4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317394112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = -33.080409 kcal Electronic energy + Delta-G solvation = -26196.346739 eV Core-core repulsion = 22340.755350 eV Total energy + Delta-G solvation = -3855.591389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72706 -39.83922 -38.52277 -36.52221 -34.33100 -32.81220 -32.22606 -31.91049 -29.38435 -29.06819 -28.14961 -25.81445 -24.13757 -23.54196 -22.57359 -22.01021 -21.15441 -20.19991 -19.66066 -18.77205 -17.19518 -17.02097 -16.69347 -16.56514 -15.71437 -15.57171 -15.42393 -14.94521 -14.48439 -14.35092 -14.20087 -13.77843 -13.69124 -13.43913 -13.40130 -12.87392 -12.44779 -12.34249 -12.25883 -12.10418 -11.97916 -11.82899 -11.50154 -11.36004 -11.03258 -10.88003 -10.70460 -10.60947 -10.53133 -10.26337 -10.10457 -10.04909 -9.91325 -9.79362 -9.59272 -9.18730 -8.87378 -8.72031 -6.90438 -5.70654 -2.99149 0.26088 0.94503 1.38691 1.77427 3.02607 3.36311 3.45766 3.48482 3.53412 3.54688 3.78075 3.96979 4.31995 4.34070 4.55134 4.64861 4.69228 4.84543 5.00720 5.08244 5.13790 5.21380 5.25734 5.35047 5.39849 5.45783 5.48376 5.60356 5.61530 5.75584 5.92699 6.13048 6.21636 6.22733 6.39437 6.44416 6.52054 6.71487 6.75605 6.91277 7.10747 7.12336 7.72499 7.76232 8.34439 8.47794 9.59029 10.16096 10.50769 11.52046 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018871 B = 0.002076 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.419897 B =13481.292819 C =14051.315859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.708 5.708 7 C 0.588 3.412 8 O -0.531 6.531 9 C 0.015 3.985 10 C -0.229 4.229 11 S 0.239 5.761 12 C 0.016 3.984 13 C 0.156 3.844 14 H 0.104 0.896 15 C -0.148 4.148 16 C -0.156 4.156 17 C 0.045 3.955 18 O -0.367 6.367 19 N -0.433 5.433 20 N -0.724 5.724 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.192 0.808 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -8.611 29.390 31.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.002 4.002 6 N -0.358 5.358 7 C 0.370 3.630 8 O -0.407 6.407 9 C -0.120 4.120 10 C -0.371 4.371 11 S 0.496 5.504 12 C -0.264 4.264 13 C 0.095 3.905 14 H 0.121 0.879 15 C -0.187 4.187 16 C -0.194 4.194 17 C -0.031 4.031 18 O -0.285 6.285 19 N -0.150 5.150 20 N -0.366 5.366 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.240 0.760 37 H 0.209 0.791 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.084 -8.185 29.308 31.243 hybrid contribution -0.598 0.227 -1.619 1.741 sum 6.485 -7.958 27.689 29.531 Atomic orbital electron populations 1.22420 0.99113 1.00833 0.99946 1.20154 0.91892 0.95574 0.85990 0.93259 1.22059 0.93747 1.01904 0.99366 1.21533 0.94604 0.97189 0.86838 1.45937 1.06785 1.55884 1.27232 1.17020 0.83010 0.79805 0.83180 1.90855 1.55611 1.45907 1.48371 1.20499 0.89433 1.03885 0.98172 1.26760 1.01901 1.06057 1.02410 1.82825 1.07013 1.44932 1.15584 1.26852 0.95865 1.04208 0.99430 1.21023 0.96924 0.92136 0.80442 0.87865 1.23055 1.03026 0.93375 0.99234 1.23184 1.02017 0.99576 0.94635 1.23686 1.01886 0.83620 0.93939 1.88989 1.83683 1.33835 1.22032 1.66799 1.37114 1.08794 1.02321 1.42460 1.78085 1.10656 1.05355 1.19225 1.36344 0.93831 0.87334 0.91208 1.24729 1.02260 0.95974 0.98058 1.69664 1.50998 1.08657 1.28820 0.86213 0.77799 0.78563 0.83761 1.21740 1.21891 1.20838 0.93522 0.94566 0.92726 0.91527 0.91844 0.91606 0.89485 0.76014 0.79105 0.89113 0.89864 0.89464 0.90077 0.91402 0.88303 0.78285 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.17 3.44 2.89 -67.93 -0.20 3.24 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C -0.13 -2.14 4.87 -26.73 -0.13 -2.27 16 5 C 0.12 2.15 5.56 -4.04 -0.02 2.13 16 6 N -0.71 -11.16 5.55 -61.43 -0.34 -11.50 16 7 C 0.59 10.06 7.80 -12.59 -0.10 9.96 16 8 O -0.53 -10.92 16.71 5.25 0.09 -10.83 16 9 C 0.02 0.22 6.70 -84.53 -0.57 -0.35 16 10 C -0.23 -2.71 10.62 29.65 0.31 -2.39 16 11 S 0.24 2.12 22.72 -107.50 -2.44 -0.33 16 12 C 0.02 0.16 6.10 -13.61 -0.08 0.08 16 13 C 0.16 1.22 3.94 -27.31 -0.11 1.12 16 14 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.15 -0.82 6.63 -25.20 -0.17 -0.98 16 16 C -0.16 -0.59 7.16 -24.72 -0.18 -0.77 16 17 C 0.05 0.20 7.72 38.21 0.30 0.50 16 18 O -0.37 -2.94 11.01 -35.23 -0.39 -3.33 16 19 N -0.43 -5.49 10.12 -8.51 -0.09 -5.57 16 20 N -0.72 -18.08 4.57 -53.43 -0.24 -18.32 16 21 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 25 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 35 H 0.09 1.88 7.75 -51.93 -0.40 1.48 16 36 H 0.40 5.50 7.99 -40.82 -0.33 5.17 16 37 H 0.19 2.09 8.03 -52.49 -0.42 1.66 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.51 7.69 -51.93 -0.40 0.11 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 45 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -34.25 390.72 -9.56 -43.81 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.91 Total: 9.82 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.83 Total: 0.40 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.05 Total: -63.36 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.30 Total: -14.16 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.44 Total: -0.33 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.25 -9.56 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317394112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.729 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds