Wall clock time and date at job start Sat Apr 11 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47438 * 2 1 4 4 C 1.52997 * 109.47210 * 119.99708 * 2 1 3 5 5 C 1.52999 * 109.47319 * 185.00002 * 4 2 1 6 6 N 1.46509 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99779 * 180.02562 * 6 5 4 8 8 O 1.21631 * 120.00187 * 359.97438 * 7 6 5 9 9 C 1.47263 * 119.99754 * 179.97438 * 7 6 5 10 10 C 1.35199 * 123.14321 * 180.02562 * 9 7 6 11 11 S 1.70945 * 108.83153 * 179.70087 * 10 9 7 12 12 C 1.70772 * 91.12351 * 0.34061 * 11 10 9 13 13 C 1.50700 * 124.71715 * 179.91870 * 12 11 10 14 14 H 1.08999 * 110.67744 * 197.66294 * 13 12 11 15 15 C 1.54994 * 110.62228 * 74.69601 * 13 12 11 16 16 C 1.54807 * 102.09860 * 204.47433 * 15 13 12 17 17 C 1.54105 * 104.18504 * 20.88235 * 16 15 13 18 18 O 1.43746 * 107.42259 * 1.95340 * 17 16 15 19 19 N 1.28642 * 110.56321 * 359.65281 * 12 11 10 20 20 N 1.46491 * 109.47070 * 239.99828 * 2 1 3 21 21 C 1.36940 * 120.00221 * 85.00059 * 20 2 1 22 22 H 1.07996 * 119.99308 * 0.02562 * 21 20 2 23 23 C 1.38814 * 120.00112 * 180.02562 * 21 20 2 24 24 N 1.31620 * 119.99580 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00117 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46925 * 90.00100 * 25 23 21 27 27 H 1.48492 * 109.47152 * 209.99839 * 25 23 21 28 28 H 1.48499 * 109.46902 * 330.00360 * 25 23 21 29 29 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46863 * 300.00144 * 1 2 3 31 31 H 1.08991 * 109.47201 * 59.99922 * 1 2 3 32 32 H 1.09001 * 109.47407 * 64.99934 * 4 2 1 33 33 H 1.09005 * 109.47721 * 305.00087 * 4 2 1 34 34 H 1.09003 * 109.47154 * 60.00394 * 5 4 2 35 35 H 1.08996 * 109.46899 * 299.99834 * 5 4 2 36 36 H 0.97002 * 119.99778 * 359.97438 * 6 5 4 37 37 H 1.08001 * 125.58438 * 359.96587 * 10 9 7 38 38 H 1.09007 * 110.90973 * 86.27291 * 15 13 12 39 39 H 1.08999 * 110.90910 * 322.67689 * 15 13 12 40 40 H 1.08996 * 110.48875 * 262.20504 * 16 15 13 41 41 H 1.09000 * 110.48902 * 139.55378 * 16 15 13 42 42 H 1.09002 * 109.88076 * 121.45430 * 17 16 15 43 43 H 1.08996 * 109.87584 * 242.45546 * 17 16 15 44 44 H 0.97006 * 120.00272 * 264.99813 * 20 2 1 45 45 H 0.97006 * 119.99346 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 7 4.0533 -1.3043 2.5097 7 6 5.3741 -1.3397 2.7753 8 8 6.1607 -0.7983 2.0219 9 6 5.8650 -2.0339 3.9777 10 6 7.1746 -2.1082 4.3055 11 16 7.3291 -2.9842 5.7653 12 6 5.6384 -3.2092 5.8484 13 6 4.9248 -3.9555 6.9462 14 1 3.9180 -4.2313 6.6326 15 6 4.8796 -3.1075 8.2427 16 6 4.7329 -4.1937 9.3359 17 6 5.2406 -5.4817 8.6591 18 8 5.6738 -5.1298 7.3344 19 7 5.0580 -2.6484 4.8467 20 7 2.0183 -0.6906 -1.1961 21 6 2.1491 -0.0075 -2.3757 22 1 1.8927 1.0404 -2.4241 23 6 2.6113 -0.6621 -3.5092 24 7 2.7375 -0.0053 -4.6429 25 14 3.0556 -2.4746 -3.4253 26 1 1.8581 -3.2929 -3.7441 27 1 4.1304 -2.7667 -4.4073 28 1 3.5311 -2.8048 -2.0578 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7714 1.2057 33 1 1.6054 -0.2617 2.1371 34 1 3.8532 0.4371 1.3574 35 1 3.9994 -1.0728 0.4260 36 1 3.4259 -1.7358 3.1107 37 1 7.9892 -1.6802 3.7401 38 1 4.0185 -2.4391 8.2405 39 1 5.8051 -2.5467 8.3733 40 1 3.6884 -4.3024 9.6280 41 1 5.3487 -3.9495 10.2015 42 1 6.0762 -5.8934 9.2252 43 1 4.4347 -6.2134 8.6033 44 1 2.2491 -1.6318 -1.1525 45 1 3.0608 -0.4627 -5.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317394115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:52 Heat of formation + Delta-G solvation = -29.163569 kcal Electronic energy + Delta-G solvation = -26251.807779 eV Core-core repulsion = 22396.386237 eV Total energy + Delta-G solvation = -3855.421542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78806 -39.89167 -38.63762 -36.72026 -34.47175 -32.84255 -32.24721 -32.01273 -29.85701 -29.17414 -28.48181 -25.93730 -24.25829 -23.35089 -22.34861 -22.04146 -21.35389 -20.30252 -19.81321 -18.90176 -17.53652 -17.06345 -16.77489 -16.62855 -15.86406 -15.64685 -15.47061 -15.13948 -14.72948 -14.41042 -14.16793 -13.96341 -13.78051 -13.47320 -13.34961 -12.90412 -12.50885 -12.44098 -12.28830 -12.22354 -12.12377 -12.01305 -11.90599 -11.39751 -11.19688 -11.02220 -10.76069 -10.62511 -10.48129 -10.42023 -10.20182 -10.08767 -9.97641 -9.88346 -9.53536 -9.27500 -8.91756 -8.83816 -7.22634 -5.71762 -3.07054 0.17693 0.86619 1.31101 1.67207 2.89777 3.28986 3.31954 3.42559 3.45808 3.50488 3.75275 3.92124 4.26087 4.31884 4.52136 4.62557 4.64461 4.68458 4.92390 4.99537 5.09633 5.14757 5.18505 5.22874 5.23632 5.32804 5.44849 5.49410 5.54486 5.62862 5.67257 6.00017 6.10072 6.16956 6.26914 6.29494 6.39105 6.51847 6.59371 6.81424 7.00556 7.02762 7.60789 8.04381 8.23151 8.47281 9.25642 9.98351 10.17607 11.46679 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.002243 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.720689 B =12477.699124 C =13007.225673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.119 3.881 6 N -0.710 5.710 7 C 0.588 3.412 8 O -0.529 6.529 9 C 0.014 3.986 10 C -0.229 4.229 11 S 0.248 5.752 12 C 0.018 3.982 13 C 0.155 3.845 14 H 0.105 0.895 15 C -0.145 4.145 16 C -0.155 4.155 17 C 0.047 3.953 18 O -0.369 6.369 19 N -0.433 5.433 20 N -0.748 5.748 21 C -0.240 4.240 22 H 0.091 0.909 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.193 0.807 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.636 -9.315 34.137 35.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.360 5.360 7 C 0.370 3.630 8 O -0.406 6.406 9 C -0.121 4.121 10 C -0.371 4.371 11 S 0.506 5.494 12 C -0.261 4.261 13 C 0.094 3.906 14 H 0.123 0.877 15 C -0.184 4.184 16 C -0.193 4.193 17 C -0.030 4.030 18 O -0.288 6.288 19 N -0.150 5.150 20 N -0.392 5.392 21 C -0.370 4.370 22 H 0.108 0.892 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.210 0.790 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.602 -9.169 33.826 35.664 hybrid contribution -0.498 -1.037 -0.600 1.297 sum 6.104 -10.206 33.227 35.291 Atomic orbital electron populations 1.22387 0.98571 1.00867 1.00512 1.20124 0.92084 0.95867 0.84930 0.92362 1.22109 0.93790 1.01825 0.99704 1.21537 0.94551 0.97530 0.86711 1.45941 1.06823 1.55950 1.27326 1.17030 0.82967 0.79767 0.83216 1.90862 1.55612 1.45836 1.48278 1.20462 0.89409 1.04129 0.98128 1.26795 1.01854 1.05542 1.02937 1.82901 1.06794 1.43854 1.15887 1.26517 0.96080 1.04185 0.99305 1.21377 0.94361 0.84631 0.90195 0.87705 1.23211 1.04280 0.98287 0.92597 1.22955 1.02942 0.94398 0.98982 1.23212 1.00313 0.96728 0.82762 1.88971 1.63223 1.44679 1.31908 1.66779 1.37246 1.09394 1.01575 1.42834 1.79670 1.09446 1.07221 1.19059 1.36857 0.95574 0.85531 0.89165 1.24658 1.01459 0.97400 0.95618 1.69702 1.52770 1.35494 1.00250 0.86574 0.78027 0.86981 0.77102 1.21229 1.21800 1.20333 0.93625 0.94217 0.92220 0.91658 0.91330 0.91111 0.90038 0.75944 0.79030 0.88932 0.90002 0.90004 0.89852 0.89232 0.91660 0.80694 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 2 C 0.18 3.36 2.89 -67.94 -0.20 3.16 16 3 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 4 C -0.14 -2.03 4.87 -26.73 -0.13 -2.16 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.97 16 6 N -0.71 -10.49 5.55 -61.43 -0.34 -10.83 16 7 C 0.59 9.55 7.80 -12.59 -0.10 9.45 16 8 O -0.53 -10.44 16.71 5.25 0.09 -10.35 16 9 C 0.01 0.19 6.70 -84.53 -0.57 -0.38 16 10 C -0.23 -2.55 10.62 29.65 0.31 -2.24 16 11 S 0.25 2.08 22.69 -107.50 -2.44 -0.36 16 12 C 0.02 0.18 6.40 -13.61 -0.09 0.09 16 13 C 0.16 1.15 3.87 -26.83 -0.10 1.04 16 14 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.14 -0.71 6.58 -24.73 -0.16 -0.87 16 16 C -0.15 -0.51 7.01 -25.20 -0.18 -0.69 16 17 C 0.05 0.21 7.69 37.73 0.29 0.50 16 18 O -0.37 -2.90 11.02 -35.23 -0.39 -3.29 16 19 N -0.43 -5.15 10.12 -8.51 -0.09 -5.24 16 20 N -0.75 -17.58 4.38 -53.43 -0.23 -17.82 16 21 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 23 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 24 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 25 Si 0.88 22.85 27.74 -169.99 -4.71 18.13 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.64 7.75 -51.93 -0.40 1.23 16 36 H 0.41 5.07 7.99 -40.82 -0.33 4.75 16 37 H 0.19 1.97 8.03 -52.49 -0.42 1.55 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.36 8.44 5.66 -40.82 -0.23 8.21 16 45 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -35.16 387.94 -9.22 -44.38 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.88 Total: 8.11 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.84 Total: 0.52 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.11 Total: -62.99 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.30 Total: -13.64 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.44 Total: -0.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.16 -9.22 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317394115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.216 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds