Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00334 * 0.02562 * 7 6 5 9 9 C 1.47277 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.35204 * 123.14319 * 179.70684 * 9 7 6 11 11 S 1.70937 * 108.82850 * 179.90596 * 10 9 7 12 12 C 1.70778 * 91.12885 * 0.30465 * 11 10 9 13 13 C 1.50693 * 124.71975 * 179.82311 * 12 11 10 14 14 H 1.09005 * 110.33295 * 197.24462 * 13 12 11 15 15 C 1.54482 * 110.37253 * 74.99860 * 13 12 11 16 16 C 1.54505 * 104.06245 * 217.18710 * 15 13 12 17 17 C 1.54479 * 104.06549 * 0.02562 * 16 15 13 18 18 O 1.44418 * 110.37570 * 319.61594 * 13 12 11 19 19 N 1.28651 * 110.55596 * 359.81970 * 12 11 10 20 20 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 34 34 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 35 35 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 36 36 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 37 37 H 1.08004 * 125.58603 * 0.02562 * 10 9 7 38 38 H 1.08998 * 110.50946 * 335.83094 * 15 13 12 39 39 H 1.08998 * 110.50996 * 98.40842 * 15 13 12 40 40 H 1.09005 * 110.51248 * 118.64378 * 16 15 13 41 41 H 1.09006 * 110.51364 * 241.21698 * 16 15 13 42 42 H 1.08996 * 110.37511 * 142.80581 * 17 16 15 43 43 H 1.09001 * 110.37331 * 265.03906 * 17 16 15 44 44 H 0.97000 * 119.99792 * 94.99575 * 20 2 1 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1606 -0.7983 -2.0219 9 6 5.8649 -2.0333 -3.9781 10 6 7.1741 -2.1030 -4.3087 11 16 7.3297 -2.9902 -5.7615 12 6 5.6383 -3.2091 -5.8486 13 6 4.9249 -3.9557 -6.9461 14 1 3.8644 -3.7035 -6.9484 15 6 5.1149 -5.4789 -6.7718 16 6 5.2514 -6.0080 -8.2170 17 6 5.1284 -4.7419 -9.0935 18 8 5.5185 -3.6541 -8.2276 19 7 5.0580 -2.6480 -4.8469 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6062 -0.6633 3.5106 24 7 2.9191 -1.9403 3.4515 25 14 2.7773 0.2668 5.1216 26 1 2.3647 1.6796 4.9237 27 1 1.9116 -0.3627 6.1509 28 1 4.1921 0.2230 5.5706 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4368 -1.3573 35 1 3.9994 -1.0730 -0.4258 36 1 3.4258 -1.7352 -3.1109 37 1 7.9883 -1.6708 -3.7459 38 1 6.0198 -5.6881 -6.2014 39 1 4.2458 -5.9186 -6.2824 40 1 6.2239 -6.4788 -8.3611 41 1 4.4502 -6.7116 -8.4435 42 1 5.8005 -4.8060 -9.9492 43 1 4.0996 -4.6110 -9.4288 44 1 2.2489 -1.6318 1.1527 45 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317394116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -33.148283 kcal Electronic energy + Delta-G solvation = -26165.001655 eV Core-core repulsion = 22309.407323 eV Total energy + Delta-G solvation = -3855.594332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72080 -39.83702 -38.53804 -36.52703 -34.33646 -32.77089 -32.23289 -31.93984 -29.38845 -29.06502 -28.15487 -25.84129 -24.21778 -23.57792 -22.47170 -21.93973 -21.18842 -20.21161 -19.67402 -18.77350 -17.19169 -16.93599 -16.69033 -16.57233 -15.78166 -15.60368 -15.39745 -14.96248 -14.54672 -14.36797 -14.25993 -13.78498 -13.66850 -13.44706 -13.28729 -12.87676 -12.45419 -12.35608 -12.23537 -12.12620 -11.98449 -11.88978 -11.50463 -11.26427 -11.03811 -10.89079 -10.71947 -10.60490 -10.51658 -10.26899 -10.14912 -10.03208 -9.91421 -9.79247 -9.59982 -9.19809 -8.88292 -8.72625 -6.90791 -5.71104 -2.99528 0.25006 0.93492 1.38063 1.76056 2.98951 3.35872 3.45101 3.47717 3.53301 3.55449 3.82571 4.02580 4.32128 4.37511 4.58001 4.64529 4.70105 4.77899 5.00166 5.06247 5.14582 5.17835 5.29933 5.34682 5.43077 5.45332 5.46732 5.59104 5.61102 5.75112 5.92346 6.12610 6.16937 6.22277 6.39024 6.43951 6.51586 6.71002 6.75159 6.90857 7.10080 7.11166 7.71925 7.76473 8.33955 8.47247 9.58663 10.15707 10.50400 11.51654 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.002079 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.545044 B =13462.240114 C =14068.533831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.708 5.708 7 C 0.588 3.412 8 O -0.531 6.531 9 C 0.015 3.985 10 C -0.229 4.229 11 S 0.245 5.755 12 C 0.018 3.982 13 C 0.154 3.846 14 H 0.104 0.896 15 C -0.147 4.147 16 C -0.155 4.155 17 C 0.045 3.955 18 O -0.366 6.366 19 N -0.433 5.433 20 N -0.724 5.724 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.192 0.808 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -8.383 -29.375 31.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.002 4.002 6 N -0.358 5.358 7 C 0.370 3.630 8 O -0.407 6.407 9 C -0.120 4.120 10 C -0.372 4.372 11 S 0.502 5.498 12 C -0.261 4.261 13 C 0.093 3.907 14 H 0.122 0.878 15 C -0.186 4.186 16 C -0.193 4.193 17 C -0.032 4.032 18 O -0.285 6.285 19 N -0.150 5.150 20 N -0.366 5.366 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.240 0.760 37 H 0.209 0.791 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.587 -7.979 -29.292 31.066 hybrid contribution -0.657 0.217 1.590 1.734 sum 5.930 -7.762 -27.703 29.375 Atomic orbital electron populations 1.22418 0.99113 1.00834 0.99949 1.20157 0.91888 0.95581 0.85992 0.93248 1.22059 0.93749 1.01902 0.99365 1.21532 0.94603 0.97199 0.86831 1.45936 1.06755 1.55865 1.27289 1.17015 0.83010 0.79820 0.83157 1.90854 1.55624 1.45986 1.48250 1.20493 0.89449 1.03786 0.98272 1.26783 1.01903 1.05941 1.02536 1.82876 1.06735 1.44331 1.15824 1.26559 0.95947 1.04338 0.99275 1.21221 0.96545 0.92315 0.80590 0.87838 1.23038 1.04243 0.93380 0.97910 1.22966 1.03664 0.98511 0.94132 1.23467 1.01014 0.84922 0.93755 1.89167 1.74079 1.45199 1.20025 1.66789 1.37151 1.08723 1.02290 1.42467 1.78067 1.10662 1.05369 1.19273 1.36350 0.93821 0.87238 0.91142 1.24732 1.02314 0.95960 0.98033 1.69668 1.51166 1.08635 1.28639 0.86145 0.77278 0.78787 0.84163 1.20586 1.22012 1.21916 0.94562 0.93520 0.92726 0.91530 0.91844 0.91593 0.89486 0.76020 0.79063 0.90178 0.89131 0.90179 0.89872 0.88406 0.91571 0.78288 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.42 2.89 -67.93 -0.20 3.23 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C -0.13 -2.13 4.87 -26.73 -0.13 -2.26 16 5 C 0.12 2.14 5.56 -4.04 -0.02 2.11 16 6 N -0.71 -11.10 5.55 -61.43 -0.34 -11.44 16 7 C 0.59 10.00 7.80 -12.59 -0.10 9.91 16 8 O -0.53 -10.87 16.71 5.25 0.09 -10.78 16 9 C 0.02 0.22 6.70 -84.52 -0.57 -0.35 16 10 C -0.23 -2.70 10.62 29.65 0.31 -2.38 16 11 S 0.25 2.18 22.69 -107.50 -2.44 -0.26 16 12 C 0.02 0.18 6.26 -13.61 -0.09 0.10 16 13 C 0.15 1.21 3.82 -27.11 -0.10 1.11 16 14 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 15 C -0.15 -0.84 6.62 -25.16 -0.17 -1.01 16 16 C -0.15 -0.60 7.09 -25.16 -0.18 -0.78 16 17 C 0.05 0.21 7.63 37.93 0.29 0.50 16 18 O -0.37 -2.94 11.12 -35.23 -0.39 -3.33 16 19 N -0.43 -5.44 10.12 -8.51 -0.09 -5.52 16 20 N -0.72 -18.04 4.57 -53.42 -0.24 -18.29 16 21 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 25 Si 0.90 22.93 29.55 -169.99 -5.02 17.90 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.87 7.75 -51.93 -0.40 1.47 16 36 H 0.40 5.45 7.99 -40.82 -0.33 5.12 16 37 H 0.19 2.07 8.03 -52.48 -0.42 1.65 16 38 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -34.11 390.85 -9.58 -43.69 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.92 Total: 9.71 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.84 Total: 0.35 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.05 Total: -63.18 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.30 Total: -14.11 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.44 Total: -0.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.11 -9.58 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317394116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.541 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds