Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47351 * 2 1 4 4 C 1.53000 * 109.47485 * 239.99429 * 2 1 3 5 5 C 1.52996 * 109.47271 * 175.00232 * 4 2 1 6 6 N 1.46499 * 109.46959 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00065 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00118 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 6 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21703 * 120.00193 * 359.72118 * 12 11 10 14 14 C 1.46586 * 119.99782 * 179.72446 * 12 11 10 15 15 C 1.36647 * 125.45923 * 179.97438 * 14 12 11 16 16 C 1.37473 * 113.29720 * 179.97438 * 15 14 12 17 17 C 1.33816 * 115.10141 * 359.97438 * 16 15 14 18 18 S 1.70618 * 110.95485 * 359.76349 * 17 16 15 19 19 N 1.46503 * 109.46784 * 119.99872 * 2 1 3 20 20 C 1.36943 * 119.99680 * 274.99846 * 19 2 1 21 21 H 1.07994 * 120.00097 * 0.02562 * 20 19 2 22 22 C 1.38809 * 119.99534 * 180.02562 * 20 19 2 23 23 N 1.31616 * 120.00551 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99715 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47232 * 89.99775 * 24 22 20 26 26 H 1.48497 * 109.47138 * 209.99656 * 24 22 20 27 27 H 1.48499 * 109.47274 * 329.99620 * 24 22 20 28 28 H 1.09004 * 109.47048 * 60.00302 * 1 2 3 29 29 H 1.08999 * 109.47589 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47345 * 300.00657 * 1 2 3 31 31 H 1.09000 * 109.46793 * 54.99954 * 4 2 1 32 32 H 1.08998 * 109.47049 * 295.00628 * 4 2 1 33 33 H 1.08994 * 109.47190 * 60.00487 * 5 4 2 34 34 H 1.08998 * 109.47408 * 300.00176 * 5 4 2 35 35 H 0.97000 * 120.00386 * 0.02562 * 6 5 4 36 36 H 1.08995 * 109.47322 * 60.00554 * 9 7 6 37 37 H 1.09006 * 109.46960 * 300.00111 * 9 7 6 38 38 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 39 39 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 40 40 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 41 41 H 1.08000 * 123.34736 * 359.93752 * 15 14 12 42 42 H 1.07996 * 122.44428 * 180.02562 * 16 15 14 43 43 H 1.07996 * 124.52398 * 180.02562 * 17 16 15 44 44 H 0.96999 * 120.00596 * 95.00240 * 19 2 1 45 45 H 0.96998 * 120.00570 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0531 -1.3036 -2.5099 7 6 5.3740 -1.3389 -2.7757 8 8 6.1584 -0.7997 -2.0241 9 6 5.8763 -2.0494 -4.0061 10 6 7.4012 -1.9414 -4.0706 11 7 7.8894 -2.6316 -5.2670 12 6 9.2108 -2.6720 -5.5295 13 8 9.9979 -2.1309 -4.7753 14 6 9.6999 -3.3678 -6.7234 15 6 11.0099 -3.4772 -7.0963 16 6 11.1863 -4.1849 -8.2615 17 6 10.0612 -4.6406 -8.8247 18 16 8.6954 -4.2024 -7.9008 19 7 2.0182 -0.6906 1.1962 20 6 2.1489 -0.0074 2.3758 21 1 1.8917 1.0404 2.4243 22 6 2.6121 -0.6616 3.5091 23 7 2.9250 -1.9386 3.4501 24 14 2.7898 0.2702 5.1184 25 1 1.5221 0.1781 5.8863 26 1 3.8947 -0.3224 5.9141 27 1 3.0938 1.6957 4.8341 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -0.2619 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.9994 -1.0729 -0.4258 34 1 3.8532 0.4368 -1.3572 35 1 3.4258 -1.7346 -3.1113 36 1 5.4414 -1.5903 -4.8938 37 1 5.5883 -3.0998 -3.9621 38 1 7.8358 -2.4009 -3.1827 39 1 7.6894 -0.8912 -4.1142 40 1 7.2621 -3.0632 -5.8679 41 1 11.8255 -3.0496 -6.5320 42 1 12.1616 -4.3609 -8.6905 43 1 10.0231 -5.2133 -9.7396 44 1 2.2489 -1.6318 1.1528 45 1 3.2483 -2.3959 4.2421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317413725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -40.290166 kcal Electronic energy + Delta-G solvation = -25287.524793 eV Core-core repulsion = 21431.620766 eV Total energy + Delta-G solvation = -3855.904027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18859 -39.52154 -37.92920 -36.65509 -35.42894 -34.37779 -32.31573 -31.69251 -30.10072 -29.13729 -28.05449 -25.79009 -24.28366 -23.61268 -22.31270 -21.63511 -20.64556 -19.85260 -19.58409 -18.94067 -17.34841 -17.04220 -16.45535 -16.28119 -15.98024 -15.64174 -15.37097 -15.17091 -14.91206 -14.26346 -13.97455 -13.74421 -13.53221 -13.44327 -13.28103 -13.20607 -12.80169 -12.73470 -12.48928 -12.20844 -12.02918 -11.75781 -11.54805 -11.50483 -11.07744 -10.91294 -10.74336 -10.62436 -10.45700 -10.29661 -10.01000 -9.71455 -9.61964 -9.55100 -9.28471 -9.09352 -8.92110 -8.82591 -6.93858 -5.73523 -3.02286 0.03834 0.96902 1.36763 1.95081 2.60978 2.69694 2.86336 3.39237 3.46750 3.52336 3.53981 4.29503 4.46683 4.57389 4.62582 4.77192 4.79120 4.82470 5.00338 5.14153 5.29644 5.38684 5.47062 5.57032 5.61361 5.65724 5.68042 5.78085 5.84343 5.87545 6.00096 6.05977 6.17290 6.33597 6.39055 6.46680 6.65626 6.70066 6.86281 7.03863 7.05897 7.58518 7.73708 7.79837 8.31045 8.44813 9.56284 10.12606 10.47035 11.49084 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.001624 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.030487 B =17241.439651 C =18167.891160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.728 5.728 7 C 0.511 3.489 8 O -0.531 6.531 9 C -0.154 4.154 10 C 0.134 3.866 11 N -0.728 5.728 12 C 0.589 3.411 13 O -0.521 6.521 14 C -0.265 4.265 15 C -0.055 4.055 16 C -0.149 4.149 17 C -0.229 4.229 18 S 0.197 5.803 19 N -0.723 5.723 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.170 0.830 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.251 -6.914 -30.723 32.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.379 5.379 7 C 0.296 3.704 8 O -0.408 6.408 9 C -0.195 4.195 10 C 0.011 3.989 11 N -0.380 5.380 12 C 0.375 3.625 13 O -0.398 6.398 14 C -0.386 4.386 15 C -0.088 4.088 16 C -0.180 4.180 17 C -0.367 4.367 18 S 0.464 5.536 19 N -0.365 5.365 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.839 -6.234 -29.606 31.254 hybrid contribution 1.006 -0.217 0.326 1.080 sum 8.845 -6.451 -29.280 31.260 Atomic orbital electron populations 1.22424 0.99148 1.00804 0.99953 1.20156 0.91876 0.95610 0.86050 0.93286 1.22053 0.93883 1.01769 0.99331 1.21477 0.94419 0.97214 0.87072 1.46100 1.07044 1.57126 1.27618 1.20194 0.82705 0.80772 0.86741 1.90793 1.55117 1.45397 1.49452 1.21813 0.96498 1.02904 0.98248 1.21115 0.91888 0.98729 0.87179 1.45844 1.06953 1.57610 1.27577 1.16915 0.82256 0.79597 0.83756 1.90885 1.55259 1.45339 1.48318 1.24670 0.98372 1.12457 1.03055 1.20863 0.95738 0.96627 0.95620 1.20090 0.99879 1.01418 0.96636 1.25337 0.97359 1.07821 1.06136 1.82955 1.08904 1.47089 1.14666 1.42446 1.78107 1.10632 1.05339 1.19223 1.36535 0.93876 0.87346 0.91197 1.24725 1.02113 0.95975 0.98064 1.69647 1.50901 1.08680 1.28850 0.86215 0.77208 0.78894 0.84030 1.21832 1.21809 1.20760 0.94604 0.93544 0.92724 0.91964 0.91620 0.89639 0.91781 0.77036 0.88284 0.88148 0.89879 0.90010 0.76968 0.82725 0.83559 0.81284 0.78309 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.15 0.35 -2.44 16 2 C 0.17 3.26 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.92 4.87 -26.73 -0.13 -2.05 16 5 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 6 N -0.73 -8.82 5.56 -60.30 -0.33 -9.15 16 7 C 0.51 6.80 7.83 -10.98 -0.09 6.71 16 8 O -0.53 -9.93 15.98 5.55 0.09 -9.84 16 9 C -0.15 -1.25 5.81 -27.88 -0.16 -1.41 16 10 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 11 N -0.73 -6.39 5.55 -61.64 -0.34 -6.73 16 12 C 0.59 6.68 7.78 -12.89 -0.10 6.58 16 13 O -0.52 -8.12 16.84 5.19 0.09 -8.03 16 14 C -0.27 -2.32 6.45 -36.79 -0.24 -2.55 16 15 C -0.06 -0.44 10.01 -40.44 -0.40 -0.85 16 16 C -0.15 -0.87 10.15 -41.41 -0.42 -1.29 16 17 C -0.23 -1.13 10.92 29.18 0.32 -0.81 16 18 S 0.20 1.05 22.16 -107.50 -2.38 -1.34 16 19 N -0.72 -17.58 4.57 -53.43 -0.24 -17.82 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 24 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.30 8.47 -40.82 -0.35 2.95 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.09 8.10 -51.92 -0.42 0.66 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.40 2.20 7.59 -40.82 -0.31 1.89 16 41 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -36.48 398.09 -9.62 -46.09 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.83 Total: 9.61 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.35 Total: 1.07 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.20 Total: -61.30 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.87 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.38 Total: -1.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.48 -9.62 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317413725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.802 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds