Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47340 * 2 1 4 4 C 1.52996 * 109.47461 * 119.99872 * 2 1 3 5 5 C 1.52997 * 109.47131 * 184.99710 * 4 2 1 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00072 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99838 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.47353 * 180.02562 * 9 7 6 11 11 N 1.46496 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99544 * 179.97438 * 11 10 9 13 13 O 1.21707 * 120.00375 * 0.02562 * 12 11 10 14 14 C 1.46586 * 120.00036 * 179.97438 * 12 11 10 15 15 C 1.36650 * 125.46101 * 180.02562 * 14 12 11 16 16 C 1.37469 * 113.29587 * 180.02562 * 15 14 12 17 17 C 1.33813 * 115.10525 * 359.97438 * 16 15 14 18 18 S 1.70624 * 110.95203 * 359.72885 * 17 16 15 19 19 N 1.46501 * 109.46987 * 240.00309 * 2 1 3 20 20 C 1.36937 * 120.00101 * 84.99377 * 19 2 1 21 21 H 1.07997 * 119.99850 * 0.02562 * 20 19 2 22 22 C 1.38819 * 119.99854 * 180.02562 * 20 19 2 23 23 N 1.31615 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99749 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47322 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47183 * 120.00337 * 24 22 20 27 27 H 1.48500 * 109.47107 * 239.99921 * 24 22 20 28 28 H 1.09001 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46649 * 300.00091 * 1 2 3 30 30 H 1.08992 * 109.47282 * 59.99495 * 1 2 3 31 31 H 1.09001 * 109.46997 * 65.00136 * 4 2 1 32 32 H 1.08996 * 109.47452 * 304.99710 * 4 2 1 33 33 H 1.09001 * 109.47289 * 60.00050 * 5 4 2 34 34 H 1.09004 * 109.47261 * 300.00306 * 5 4 2 35 35 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.47043 * 299.99952 * 9 7 6 37 37 H 1.09001 * 109.47324 * 59.99585 * 9 7 6 38 38 H 1.08996 * 109.46524 * 299.99867 * 10 9 7 39 39 H 1.08992 * 109.46876 * 59.99534 * 10 9 7 40 40 H 0.96994 * 120.00700 * 359.97438 * 11 10 9 41 41 H 1.08000 * 123.34914 * 359.97438 * 15 14 12 42 42 H 1.08005 * 122.44640 * 180.02562 * 16 15 14 43 43 H 1.07998 * 124.52430 * 180.02562 * 17 16 15 44 44 H 0.97001 * 119.99956 * 265.00435 * 19 2 1 45 45 H 0.97004 * 119.99573 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3135 6 7 4.0534 -1.3044 2.5094 7 6 5.3742 -1.3398 2.7749 8 8 6.1585 -0.7991 2.0241 9 6 5.8767 -2.0512 4.0047 10 6 7.4015 -1.9421 4.0699 11 7 7.8899 -2.6331 5.2657 12 6 9.2107 -2.6684 5.5313 13 8 9.9977 -2.1259 4.7779 14 6 9.6994 -3.3594 6.7281 15 6 11.0090 -3.4634 7.1043 16 6 11.1851 -4.1675 8.2717 17 6 10.0602 -4.6246 8.8342 18 16 8.6938 -4.1804 7.9140 19 7 2.0183 -0.6906 -1.1962 20 6 2.1489 -0.0074 -2.3758 21 1 1.8924 1.0405 -2.4242 22 6 2.6111 -0.6619 -3.5094 23 7 2.9233 -1.9392 -3.4505 24 14 2.7900 0.2701 -5.1183 25 1 2.3772 1.6828 -4.9205 26 1 4.2068 0.2263 -5.5608 27 1 1.9289 -0.3577 -6.1524 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -1.7715 1.2056 32 1 1.6056 -0.2617 2.1369 33 1 3.8533 0.4370 1.3571 34 1 3.9995 -1.0728 0.4257 35 1 3.4261 -1.7364 3.1100 36 1 5.4418 -1.5927 4.8929 37 1 5.5888 -3.1015 3.9600 38 1 7.8367 -2.4002 3.1818 39 1 7.6889 -0.8917 4.1147 40 1 7.2627 -3.0652 5.8663 41 1 11.8246 -3.0358 6.5400 42 1 12.1600 -4.3385 8.7039 43 1 10.0219 -5.1943 9.7509 44 1 2.2489 -1.6317 -1.1527 45 1 3.2466 -2.3964 -4.2426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317413726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -40.379131 kcal Electronic energy + Delta-G solvation = -25287.429445 eV Core-core repulsion = 21431.521559 eV Total energy + Delta-G solvation = -3855.907885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18892 -39.52184 -37.92959 -36.65630 -35.42954 -34.37855 -32.31727 -31.69312 -30.10102 -29.13905 -28.05565 -25.79057 -24.28470 -23.61506 -22.31347 -21.63553 -20.64640 -19.85315 -19.58459 -18.94093 -17.34978 -17.04394 -16.45558 -16.28170 -15.98042 -15.64209 -15.37340 -15.16952 -14.91531 -14.26182 -13.97497 -13.74212 -13.53491 -13.44484 -13.28218 -13.20559 -12.80165 -12.73509 -12.49282 -12.20912 -12.03082 -11.75814 -11.54860 -11.50508 -11.07963 -10.92162 -10.74760 -10.63054 -10.45705 -10.28328 -9.99123 -9.71377 -9.62506 -9.55124 -9.28485 -9.09386 -8.92604 -8.82893 -6.93957 -5.73923 -3.02526 0.03806 0.96885 1.36738 1.95075 2.60969 2.69644 2.86301 3.39179 3.46530 3.52270 3.54415 4.29473 4.46655 4.57357 4.62413 4.77160 4.79085 4.82430 5.00321 5.14109 5.29519 5.38572 5.47031 5.56912 5.61335 5.65729 5.67929 5.78103 5.84326 5.87400 6.00086 6.05889 6.17136 6.33487 6.38928 6.46563 6.65518 6.69906 6.86192 7.03835 7.05798 7.58479 7.74063 7.79821 8.30988 8.44469 9.56024 10.12392 10.46817 11.48788 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020068 B = 0.001623 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.929051 B =17244.935767 C =18173.325409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.728 5.728 7 C 0.511 3.489 8 O -0.531 6.531 9 C -0.154 4.154 10 C 0.134 3.866 11 N -0.728 5.728 12 C 0.589 3.411 13 O -0.521 6.521 14 C -0.265 4.265 15 C -0.055 4.055 16 C -0.149 4.149 17 C -0.229 4.229 18 S 0.197 5.803 19 N -0.723 5.723 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.293 1.293 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.170 0.830 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 -6.860 30.760 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.379 5.379 7 C 0.296 3.704 8 O -0.408 6.408 9 C -0.195 4.195 10 C 0.011 3.989 11 N -0.380 5.380 12 C 0.375 3.625 13 O -0.398 6.398 14 C -0.386 4.386 15 C -0.088 4.088 16 C -0.180 4.180 17 C -0.366 4.366 18 S 0.464 5.536 19 N -0.365 5.365 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.794 -6.162 29.653 31.274 hybrid contribution 1.022 -0.235 -0.331 1.100 sum 8.817 -6.397 29.323 31.280 Atomic orbital electron populations 1.22423 0.99143 1.00804 0.99958 1.20159 0.91881 0.95609 0.86048 0.93285 1.22053 0.93883 1.01770 0.99331 1.21481 0.94417 0.97209 0.87084 1.46101 1.07045 1.57051 1.27691 1.20192 0.82702 0.80787 0.86727 1.90793 1.55132 1.45366 1.49469 1.21813 0.96499 1.02904 0.98250 1.21112 0.91889 0.98703 0.87203 1.45840 1.06989 1.57570 1.27580 1.16915 0.82257 0.79580 0.83775 1.90886 1.55244 1.45212 1.48462 1.24670 0.98367 1.12669 1.02849 1.20863 0.95756 0.96647 0.95581 1.20090 0.99897 1.01372 0.96665 1.25338 0.97344 1.07765 1.06202 1.82955 1.08788 1.47504 1.14375 1.42452 1.78089 1.10636 1.05356 1.19271 1.36457 0.93869 0.87309 0.91138 1.24729 1.02154 0.95968 0.98078 1.69662 1.50977 1.08657 1.28767 0.86144 0.77331 0.78799 0.84083 1.20576 1.21876 1.21977 0.93541 0.94601 0.92720 0.91620 0.91960 0.91770 0.89649 0.77035 0.88292 0.88139 0.89875 0.90015 0.76968 0.82725 0.83558 0.81283 0.78313 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.26 2.89 -67.93 -0.20 3.06 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.92 4.87 -26.73 -0.13 -2.05 16 5 C 0.12 1.93 5.56 -4.04 -0.02 1.91 16 6 N -0.73 -8.81 5.56 -60.29 -0.33 -9.15 16 7 C 0.51 6.80 7.83 -10.99 -0.09 6.71 16 8 O -0.53 -9.93 15.98 5.55 0.09 -9.84 16 9 C -0.15 -1.25 5.81 -27.88 -0.16 -1.41 16 10 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 11 N -0.73 -6.39 5.55 -61.65 -0.34 -6.73 16 12 C 0.59 6.68 7.78 -12.90 -0.10 6.58 16 13 O -0.52 -8.12 16.84 5.18 0.09 -8.04 16 14 C -0.27 -2.32 6.45 -36.79 -0.24 -2.55 16 15 C -0.06 -0.44 10.01 -40.44 -0.40 -0.85 16 16 C -0.15 -0.87 10.15 -41.42 -0.42 -1.29 16 17 C -0.23 -1.13 10.92 29.18 0.32 -0.81 16 18 S 0.20 1.05 22.16 -107.50 -2.38 -1.34 16 19 N -0.72 -17.57 4.57 -53.42 -0.24 -17.82 16 20 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 24 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.74 7.75 -51.93 -0.40 1.34 16 35 H 0.40 3.30 8.47 -40.82 -0.35 2.95 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.40 2.20 7.59 -40.82 -0.31 1.89 16 41 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 43 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -36.51 398.09 -9.61 -46.13 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.83 Total: 9.57 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.35 Total: 1.07 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.20 Total: -61.30 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.38 Total: -1.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.51 -9.61 -46.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317413726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.746 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds