Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35961 * 116.99562 * 2 1 4 4 C 1.37568 * 120.82238 * 180.02562 * 3 2 1 5 5 C 1.38040 * 114.24798 * 180.21207 * 4 3 2 6 6 C 1.47117 * 127.75982 * 179.73476 * 5 4 3 7 7 O 1.21626 * 120.00042 * 26.04887 * 6 5 4 8 8 N 1.34776 * 120.00009 * 206.05294 * 6 5 4 9 9 C 1.46931 * 120.63176 * 6.09103 * 8 6 5 10 10 C 1.53619 * 108.54695 * 126.36761 * 9 8 6 11 11 C 1.53036 * 109.24431 * 54.85335 * 10 9 8 12 12 C 1.53000 * 109.46478 * 178.49222 * 11 10 9 13 13 H 1.09002 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47009 * 60.06958 * 12 11 10 15 15 N 1.46506 * 109.46795 * 300.06865 * 12 11 10 16 16 C 1.36939 * 119.99683 * 204.99313 * 15 12 11 17 17 H 1.07995 * 120.00145 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99575 * 179.97438 * 16 15 12 19 19 N 1.31615 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99738 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47044 * 90.00321 * 20 18 16 22 22 H 1.48500 * 109.47375 * 210.00127 * 20 18 16 23 23 H 1.48498 * 109.47411 * 330.00699 * 20 18 16 24 24 C 1.53042 * 109.53780 * 298.51465 * 11 10 9 25 25 C 1.46928 * 120.63288 * 186.36349 * 8 6 5 26 26 S 1.77241 * 104.48270 * 359.68081 * 5 4 3 27 27 N 1.30365 * 120.82937 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.47230 * 60.00037 * 1 2 3 29 29 H 1.09003 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47038 * 299.99438 * 1 2 3 31 31 H 1.08001 * 122.87450 * 359.94215 * 4 3 2 32 32 H 1.08997 * 109.58514 * 246.20334 * 9 8 6 33 33 H 1.09006 * 109.58421 * 6.62070 * 9 8 6 34 34 H 1.09002 * 109.63220 * 294.86470 * 10 9 8 35 35 H 1.08995 * 109.46094 * 174.74190 * 10 9 8 36 36 H 1.09003 * 109.46101 * 58.53495 * 11 10 9 37 37 H 1.09001 * 109.46801 * 300.00413 * 14 12 11 38 38 H 1.08998 * 109.47212 * 59.99961 * 14 12 11 39 39 H 1.09002 * 109.47193 * 180.02562 * 14 12 11 40 40 H 0.97000 * 119.99878 * 25.00422 * 15 12 11 41 41 H 0.97000 * 119.99869 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.49552 * 301.40598 * 24 11 10 43 43 H 1.09003 * 109.49964 * 181.31283 * 24 11 10 44 44 H 1.08997 * 109.58506 * 353.37831 * 25 8 6 45 45 H 1.09004 * 109.58173 * 113.65444 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9005 2.5969 0.0042 6 6 5.3048 3.0353 0.0104 7 8 6.1691 2.3143 -0.4506 8 7 5.6337 4.2359 0.5270 9 6 4.6250 5.0603 1.2065 10 6 5.1539 5.4291 2.6008 11 6 6.5221 6.0999 2.4600 12 6 7.0369 6.5034 3.8432 13 1 8.0112 6.9816 3.7431 14 6 7.1691 5.2576 4.7215 15 7 6.0939 7.4389 4.4613 16 6 6.5291 8.3187 5.4162 17 1 7.5674 8.3233 5.7133 18 6 5.6357 9.2055 6.0015 19 7 4.3705 9.2003 5.6390 20 14 6.2294 10.4062 7.3035 21 1 6.6684 11.6662 6.6516 22 1 5.1225 10.6979 8.2494 23 1 7.3694 9.8092 8.0445 24 6 7.5073 5.1227 1.8145 25 6 7.0064 4.7480 0.4162 26 16 2.4470 3.6111 -0.0005 27 7 1.3521 2.3149 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0643 0.4374 0.0000 32 1 4.4450 5.9672 0.6292 33 1 3.6972 4.4963 1.3034 34 1 5.2512 4.5277 3.2058 35 1 4.4592 6.1172 3.0824 36 1 6.4287 6.9877 1.8345 37 1 6.1951 4.7786 4.8216 38 1 7.8706 4.5616 4.2615 39 1 7.5354 5.5450 5.7071 40 1 5.1614 7.4349 4.1943 41 1 3.7463 9.8202 6.0477 42 1 7.5825 4.2243 2.4270 43 1 8.4875 5.5930 1.7358 44 1 7.6504 3.9780 -0.0085 45 1 7.0171 5.6285 -0.2263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317672214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -7.060771 kcal Electronic energy + Delta-G solvation = -27338.946499 eV Core-core repulsion = 23484.483406 eV Total energy + Delta-G solvation = -3854.463093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64366 -40.18749 -38.18945 -36.69411 -35.53503 -33.10897 -32.01000 -30.88057 -30.62719 -28.51111 -28.13461 -26.00808 -24.84685 -23.66978 -23.34778 -22.12036 -20.97555 -19.53983 -19.18392 -18.30551 -17.89121 -17.27069 -16.62562 -16.40566 -16.24100 -15.48229 -15.00791 -14.98786 -14.57602 -14.28776 -14.03241 -13.92376 -13.68465 -13.61399 -13.19913 -13.05827 -12.68856 -12.38089 -12.27044 -12.06894 -11.81159 -11.65557 -11.48635 -11.35815 -11.07891 -11.01635 -10.85884 -10.63688 -10.42250 -10.35732 -10.27536 -10.10396 -9.99652 -9.75930 -9.57670 -8.93515 -8.79990 -8.56077 -6.97165 -5.78698 -3.06493 -0.13450 0.82006 1.24995 1.94488 2.41549 2.76573 2.99022 3.41899 3.47685 3.48830 4.06995 4.49889 4.56726 4.71829 4.81474 4.91483 4.92709 4.96644 5.00439 5.08280 5.20206 5.28151 5.33341 5.37505 5.49948 5.57602 5.68181 5.75407 5.80523 5.90115 5.92419 6.05126 6.14054 6.18109 6.26940 6.40036 6.47870 6.62548 6.69243 6.72423 6.89066 7.06871 7.13992 7.69323 7.76404 8.40862 9.52032 10.09967 10.44319 11.44179 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002693 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.775375 B =10394.514122 C =11551.801339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.305 3.695 4 C -0.130 4.130 5 C -0.184 4.184 6 C 0.594 3.406 7 O -0.522 6.522 8 N -0.595 5.595 9 C 0.092 3.908 10 C -0.125 4.125 11 C -0.091 4.091 12 C 0.178 3.822 13 H 0.047 0.953 14 C -0.168 4.168 15 N -0.724 5.724 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.129 4.129 25 C 0.114 3.886 26 S 0.314 5.686 27 N -0.525 5.525 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.176 0.824 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -15.445 -14.192 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.203 6.203 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.316 4.316 6 C 0.379 3.621 7 O -0.399 6.399 8 N -0.328 5.328 9 C -0.033 4.033 10 C -0.163 4.163 11 C -0.110 4.110 12 C 0.068 3.932 13 H 0.065 0.935 14 C -0.228 4.228 15 N -0.367 5.367 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.209 1.209 24 C -0.168 4.168 25 C -0.007 4.007 26 S 0.465 5.535 27 N -0.365 5.365 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.461 -14.392 -14.325 20.790 hybrid contribution 0.501 -0.636 0.831 1.160 sum -3.960 -15.028 -13.495 20.582 Atomic orbital electron populations 1.22989 0.76599 1.03624 1.02669 1.86302 1.23087 1.22659 1.88223 1.19865 0.89703 0.85324 0.95930 1.20719 0.92464 0.98386 1.05182 1.26001 0.99599 0.97862 1.08141 1.16689 0.85069 0.81514 0.78808 1.90831 1.48674 1.53275 1.47146 1.48001 1.12044 1.17524 1.55207 1.22432 0.90330 0.95372 0.95148 1.22038 0.98193 1.01828 0.94249 1.21418 0.93900 0.97390 0.98324 1.20184 0.93784 0.89968 0.89217 0.93505 1.22543 1.00240 0.98997 1.00999 1.42487 1.08048 1.39841 1.46294 1.19239 0.94114 1.10352 1.13017 0.91284 1.24709 0.95611 1.00124 1.00551 1.69641 1.02214 1.40281 1.46134 0.86223 0.77368 0.81378 0.81423 1.21791 1.21848 1.20854 1.22031 0.99395 1.00366 0.94976 1.21764 0.81080 0.99619 0.98260 1.85309 0.88897 1.11118 1.68188 1.76388 1.27972 1.01825 1.30361 0.92113 0.87984 0.91982 0.80658 0.89924 0.90159 0.91089 0.89113 0.90783 0.93382 0.94354 0.93102 0.78202 0.93563 0.90960 0.90375 0.88861 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.43 101.05 1.05 1.32 16 2 O -0.30 -3.05 10.51 -19.62 -0.21 -3.26 16 3 C 0.31 3.46 7.36 -18.42 -0.14 3.33 16 4 C -0.13 -1.44 10.18 -39.90 -0.41 -1.85 16 5 C -0.18 -2.14 6.08 -36.05 -0.22 -2.36 16 6 C 0.59 7.70 7.65 -12.66 -0.10 7.61 16 7 O -0.52 -8.06 16.45 5.25 0.09 -7.98 16 8 N -0.60 -7.03 2.97 -173.89 -0.52 -7.54 16 9 C 0.09 1.04 5.70 -3.49 -0.02 1.02 16 10 C -0.12 -1.71 4.83 -26.39 -0.13 -1.84 16 11 C -0.09 -1.30 2.14 -90.58 -0.19 -1.49 16 12 C 0.18 3.24 2.72 -67.93 -0.18 3.06 16 13 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 14 C -0.17 -2.87 8.79 37.16 0.33 -2.55 16 15 N -0.72 -16.93 5.04 -53.42 -0.27 -17.20 16 16 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 20 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.13 -1.52 4.96 -26.61 -0.13 -1.65 16 25 C 0.11 1.26 6.44 -3.71 -0.02 1.23 16 26 S 0.31 3.35 20.21 -107.50 -2.17 1.17 16 27 N -0.53 -6.21 11.03 29.19 0.32 -5.88 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.87 3.78 -25.10 -0.09 0.78 16 34 H 0.07 1.00 6.51 -51.93 -0.34 0.67 16 35 H 0.09 1.42 6.46 -51.93 -0.34 1.09 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.83 6.46 -51.93 -0.34 0.49 16 38 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.38 9.36 6.04 -40.82 -0.25 9.11 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 0.90 6.51 -51.93 -0.34 0.56 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -31.38 369.46 -8.05 -39.43 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.16 Total: 6.41 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -0.40 Total: -1.12 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.26 Total: -57.17 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.12 Total: -11.24 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.17 Total: 1.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.38 -8.05 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317672214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.369 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds