Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35966 * 116.99959 * 2 1 4 4 C 1.37575 * 120.82338 * 180.29154 * 3 2 1 5 5 C 1.38048 * 114.24561 * 180.21573 * 4 3 2 6 6 C 1.47118 * 127.75618 * 179.80514 * 5 4 3 7 7 O 1.21628 * 120.00106 * 334.23598 * 6 5 4 8 8 N 1.34775 * 119.99717 * 154.23176 * 6 5 4 9 9 C 1.46925 * 120.62879 * 353.55676 * 8 6 5 10 10 C 1.53194 * 108.77579 * 233.62991 * 9 8 6 11 11 C 1.53042 * 109.31147 * 305.36839 * 10 9 8 12 12 C 1.52998 * 109.46225 * 181.38522 * 11 10 9 13 13 H 1.09006 * 109.47181 * 299.97548 * 12 11 10 14 14 C 1.53012 * 109.47071 * 59.96902 * 12 11 10 15 15 N 1.46495 * 109.47593 * 179.97438 * 12 11 10 16 16 C 1.36939 * 120.00013 * 154.99877 * 15 12 11 17 17 H 1.07995 * 120.00323 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99701 * 180.02562 * 16 15 12 19 19 N 1.31618 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99628 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46959 * 90.00212 * 20 18 16 22 22 H 1.48498 * 109.46880 * 209.99692 * 20 18 16 23 23 H 1.48498 * 109.47443 * 330.00032 * 20 18 16 24 24 C 1.53043 * 109.52728 * 61.37105 * 11 10 9 25 25 C 1.46925 * 120.62891 * 173.58223 * 8 6 5 26 26 S 1.77230 * 104.47975 * 359.54580 * 5 4 3 27 27 N 1.30355 * 120.82900 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46903 * 300.00074 * 1 2 3 30 30 H 1.08994 * 109.47047 * 60.00124 * 1 2 3 31 31 H 1.07996 * 122.87906 * 0.04342 * 4 3 2 32 32 H 1.09007 * 109.58364 * 113.84877 * 9 8 6 33 33 H 1.08994 * 109.70990 * 353.48760 * 9 8 6 34 34 H 1.08999 * 109.49684 * 185.42033 * 10 9 8 35 35 H 1.08998 * 109.52537 * 65.33404 * 10 9 8 36 36 H 1.09000 * 109.45900 * 301.35492 * 11 10 9 37 37 H 1.09006 * 109.46591 * 60.00284 * 14 12 11 38 38 H 1.08993 * 109.46829 * 300.00689 * 14 12 11 39 39 H 1.09002 * 109.46851 * 179.97438 * 14 12 11 40 40 H 0.97004 * 119.99987 * 335.00201 * 15 12 11 41 41 H 0.96995 * 120.00049 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.49573 * 58.58130 * 24 11 10 43 43 H 1.09001 * 109.49580 * 178.67695 * 24 11 10 44 44 H 1.09003 * 109.58348 * 246.15522 * 25 8 6 45 45 H 1.08994 * 109.58817 * 6.43993 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3032 -0.0060 5 6 3.9006 2.5969 -0.0005 6 6 5.3050 3.0352 -0.0006 7 8 6.1689 2.3087 0.4524 8 7 5.6343 4.2419 -0.5026 9 6 4.6277 5.0709 -1.1796 10 6 5.1576 5.4575 -2.5641 11 6 6.5255 6.1271 -2.4136 12 6 7.0425 6.5458 -3.7913 13 1 7.1372 5.6653 -4.4269 14 6 6.0590 7.5304 -4.4275 15 7 8.3516 7.1873 -3.6476 16 6 9.2330 7.1873 -4.6957 17 1 8.9628 6.7146 -5.6284 18 6 10.4737 7.7947 -4.5592 19 7 10.8031 8.3703 -3.4223 20 14 11.6762 7.7940 -5.9887 21 1 11.4535 9.0019 -6.8234 22 1 13.0662 7.8028 -5.4661 23 1 11.4648 6.5769 -6.8128 24 6 7.5096 5.1428 -1.7773 25 6 7.0066 4.7529 -0.3838 26 16 2.4472 3.6110 -0.0010 27 7 1.3522 2.3149 -0.0005 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.0644 0.4374 -0.0116 32 1 4.4429 5.9718 -0.5945 33 1 3.7004 4.5084 -1.2874 34 1 4.4634 6.1510 -3.0387 35 1 5.2561 4.5631 -3.1793 36 1 6.4308 7.0078 -1.7783 37 1 5.9643 8.4109 -3.7920 38 1 5.0851 7.0530 -4.5344 39 1 6.4276 7.8290 -5.4089 40 1 8.5942 7.6122 -2.8099 41 1 11.6699 8.7951 -3.3271 42 1 7.5858 4.2512 -2.3995 43 1 8.4897 5.6123 -1.6919 44 1 7.0157 5.6279 0.2662 45 1 7.6496 3.9793 0.0357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317672215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -9.162923 kcal Electronic energy + Delta-G solvation = -27155.063853 eV Core-core repulsion = 23300.509604 eV Total energy + Delta-G solvation = -3854.554249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66728 -40.19668 -38.09880 -36.74671 -35.54354 -33.00221 -32.12325 -30.92006 -30.75772 -28.45830 -28.27432 -26.16769 -24.58510 -23.92997 -22.93737 -21.96629 -20.70005 -19.70271 -19.41747 -18.70432 -18.01922 -17.13894 -16.67702 -16.44254 -16.24685 -15.51820 -15.06378 -14.96598 -14.42486 -14.20789 -14.04859 -13.85889 -13.80206 -13.49961 -13.34022 -12.90099 -12.63752 -12.46656 -12.29456 -12.12739 -11.86964 -11.66678 -11.50539 -11.25180 -11.09612 -11.03827 -10.88060 -10.77127 -10.45595 -10.22321 -10.19519 -10.17603 -10.03627 -9.82503 -9.61202 -8.92190 -8.77107 -8.64069 -6.95622 -5.77246 -3.05193 -0.19099 0.74951 1.17468 1.88932 2.40071 2.75519 2.95948 3.42908 3.48682 3.49869 4.03535 4.44277 4.55840 4.65976 4.74821 4.84322 4.87121 4.89561 5.01808 5.13641 5.16659 5.27619 5.33391 5.38533 5.52074 5.58314 5.70332 5.74008 5.85586 5.88239 5.98794 6.05119 6.09552 6.26216 6.30001 6.44691 6.52721 6.62953 6.63448 6.77745 6.91682 7.07933 7.11832 7.70256 7.78330 8.41701 9.53042 10.10756 10.45341 11.45359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024592 B = 0.002314 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.316693 B =12095.802352 C =12433.376722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.296 6.296 3 C 0.307 3.693 4 C -0.131 4.131 5 C -0.179 4.179 6 C 0.591 3.409 7 O -0.517 6.517 8 N -0.595 5.595 9 C 0.093 3.907 10 C -0.126 4.126 11 C -0.091 4.091 12 C 0.178 3.822 13 H 0.045 0.955 14 C -0.167 4.167 15 N -0.722 5.722 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.122 4.122 25 C 0.112 3.888 26 S 0.304 5.696 27 N -0.527 5.527 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.177 0.823 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.362 -11.740 8.511 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.202 6.202 3 C 0.094 3.906 4 C -0.168 4.168 5 C -0.311 4.311 6 C 0.376 3.624 7 O -0.394 6.394 8 N -0.328 5.328 9 C -0.031 4.031 10 C -0.165 4.165 11 C -0.110 4.110 12 C 0.068 3.932 13 H 0.063 0.937 14 C -0.227 4.227 15 N -0.364 5.364 16 C -0.366 4.366 17 H 0.086 0.914 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.735 3.265 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.161 4.161 25 C -0.009 4.009 26 S 0.455 5.545 27 N -0.367 5.367 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.194 0.806 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.172 -10.847 8.615 26.143 hybrid contribution 1.385 -1.074 -0.620 1.860 sum -20.787 -11.921 7.994 25.261 Atomic orbital electron populations 1.22987 0.76605 1.03670 1.02604 1.86313 1.23081 1.22648 1.88146 1.19875 0.89713 0.85317 0.95719 1.20759 0.92475 0.98492 1.05067 1.26045 0.99564 0.97733 1.07735 1.16707 0.84996 0.81677 0.79021 1.90853 1.48599 1.53037 1.46908 1.48029 1.12323 1.16904 1.55543 1.22257 0.90481 0.95387 0.95015 1.22006 0.98141 1.01466 0.94865 1.21405 0.93163 0.97659 0.98780 1.20208 0.86510 0.94084 0.92386 0.93689 1.22508 0.98222 1.00346 1.01597 1.42402 1.12156 1.66611 1.15200 1.19208 0.94780 1.29618 0.93000 0.91350 1.24711 0.97955 1.01231 0.97095 1.69645 1.22165 1.42252 1.24099 0.86234 0.80869 0.77589 0.81762 1.21850 1.21834 1.20847 1.21907 1.00559 0.99646 0.93942 1.21881 0.80439 0.99628 0.98935 1.85168 0.89103 1.11455 1.68802 1.76385 1.27875 1.01787 1.30641 0.87947 0.92103 0.92047 0.80566 0.90101 0.90270 0.89816 0.91333 0.91129 0.93543 0.94326 0.92995 0.78308 0.93575 0.91774 0.88617 0.90826 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.43 101.05 1.05 1.29 16 2 O -0.30 -2.84 10.51 -19.63 -0.21 -3.04 16 3 C 0.31 3.24 7.36 -18.42 -0.14 3.10 16 4 C -0.13 -1.38 10.18 -39.89 -0.41 -1.79 16 5 C -0.18 -1.98 6.10 -36.05 -0.22 -2.20 16 6 C 0.59 7.76 7.65 -12.66 -0.10 7.67 16 7 O -0.52 -8.38 16.45 5.25 0.09 -8.30 16 8 N -0.60 -7.13 2.97 -174.16 -0.52 -7.65 16 9 C 0.09 0.92 5.66 -3.71 -0.02 0.90 16 10 C -0.13 -1.41 5.04 -26.61 -0.13 -1.54 16 11 C -0.09 -1.29 1.79 -90.58 -0.16 -1.45 16 12 C 0.18 3.22 2.47 -67.93 -0.17 3.05 16 13 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 14 C -0.17 -2.76 9.14 37.16 0.34 -2.42 16 15 N -0.72 -16.85 4.41 -53.42 -0.24 -17.08 16 16 C -0.23 -6.26 9.93 -15.06 -0.15 -6.41 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 20 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.12 -1.82 5.22 -26.61 -0.14 -1.96 16 25 C 0.11 1.45 6.44 -3.71 -0.02 1.42 16 26 S 0.30 2.85 20.19 -107.50 -2.17 0.68 16 27 N -0.53 -5.62 11.03 29.19 0.32 -5.30 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.70 3.77 -24.94 -0.09 0.61 16 34 H 0.08 0.83 6.36 -51.93 -0.33 0.50 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.51 6.40 -51.93 -0.33 0.18 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.38 9.50 7.58 -40.82 -0.31 9.19 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.68 7.41 -51.93 -0.38 1.30 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -31.36 374.58 -8.16 -39.52 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.43 Total: 5.94 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.36 Total: -0.84 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.29 Total: -56.66 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.12 Total: -11.34 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.17 Total: 0.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.36 -8.16 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317672215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.361 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds