Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47233 * 2 1 4 4 C 1.53002 * 109.46778 * 119.99771 * 2 1 3 5 5 N 1.46894 * 109.47108 * 294.99739 * 4 2 1 6 6 C 1.46906 * 110.99765 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47080 * 180.02562 * 6 5 4 8 8 O 1.21293 * 120.00291 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99815 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00480 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99966 * 179.97438 * 10 9 7 13 13 N 1.31417 * 119.99572 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00226 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47030 * 90.00156 * 14 12 10 16 16 H 1.48502 * 109.46989 * 210.00197 * 14 12 10 17 17 H 1.48495 * 109.46824 * 329.99925 * 14 12 10 18 18 C 1.52997 * 109.46644 * 239.99443 * 2 1 3 19 19 N 1.46499 * 109.47209 * 65.00697 * 18 2 1 20 20 C 1.34773 * 120.00292 * 179.97438 * 19 18 2 21 21 O 1.21279 * 119.99704 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99956 * 179.97438 * 20 19 18 23 23 C 1.50703 * 109.46791 * 179.97438 * 22 20 19 24 24 C 1.38424 * 122.54128 * 270.00036 * 23 22 20 25 25 C 1.33385 * 114.92103 * 180.02562 * 24 23 22 26 26 S 1.75884 * 109.59663 * 359.97438 * 25 24 23 27 27 C 1.33394 * 122.53830 * 90.02896 * 23 22 20 28 28 H 1.08993 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47101 * 300.00680 * 1 2 3 30 30 H 1.08999 * 109.47150 * 60.00083 * 1 2 3 31 31 H 1.09002 * 109.46867 * 54.99876 * 4 2 1 32 32 H 1.08998 * 109.46683 * 174.99517 * 4 2 1 33 33 H 1.00899 * 111.00289 * 56.04746 * 5 4 2 34 34 H 1.09000 * 109.47171 * 299.99996 * 6 5 4 35 35 H 1.09002 * 109.47200 * 59.99934 * 6 5 4 36 36 H 0.96999 * 119.99839 * 359.97438 * 9 7 6 37 37 H 0.97006 * 119.99497 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.47879 * 305.00003 * 18 2 1 39 39 H 1.09008 * 109.46734 * 184.99951 * 18 2 1 40 40 H 0.97000 * 119.99789 * 359.97438 * 19 18 2 41 41 H 1.08998 * 109.47384 * 60.00127 * 22 20 19 42 42 H 1.09001 * 109.47304 * 299.99530 * 22 20 19 43 43 H 1.07999 * 122.53445 * 0.04604 * 24 23 22 44 44 H 1.08001 * 125.20152 * 180.02562 * 25 24 23 45 45 H 1.07995 * 125.20296 * 359.70761 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0375 2.4456 6 6 2.1257 -0.6265 3.6672 7 6 1.7087 0.1787 4.8708 8 8 1.0787 1.2050 4.7254 9 7 2.0366 -0.2410 6.1089 10 6 1.6576 0.4919 7.2039 11 1 1.0960 1.4052 7.0744 12 6 1.9952 0.0589 8.4803 13 7 2.6782 -1.0527 8.6379 14 14 1.4783 1.0570 9.9724 15 1 0.1455 0.5967 10.4382 16 1 2.4732 0.8735 11.0595 17 1 1.4054 2.4941 9.6054 18 6 2.0399 -0.7214 -1.2492 19 7 1.6524 0.0352 -2.4424 20 6 1.9963 -0.4133 -3.6659 21 8 2.6270 -1.4430 -3.7791 22 6 1.5972 0.3648 -4.8933 23 6 2.1006 -0.3451 -6.1236 24 6 3.3458 -0.0915 -6.6725 25 6 3.6362 -0.8054 -7.7611 26 16 2.2889 -1.8686 -8.1461 27 6 1.3798 -1.2651 -6.7666 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6052 -1.7198 1.2952 32 1 3.1262 -0.7995 1.2056 33 1 0.6528 0.1795 2.4753 34 1 1.6920 -1.6245 3.7301 35 1 3.2126 -0.7037 3.6401 36 1 2.5407 -1.0615 6.2252 37 1 2.9142 -1.3548 9.5290 38 1 1.6053 -1.7199 -1.2951 39 1 3.1263 -0.7996 -1.2055 40 1 1.1483 0.8590 -2.3518 41 1 2.0312 1.3636 -4.8474 42 1 0.5108 0.4422 -4.9370 43 1 4.0305 0.6296 -6.2509 44 1 4.5580 -0.7412 -8.3202 45 1 0.3912 -1.5928 -6.4810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319153446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -48.873910 kcal Electronic energy + Delta-G solvation = -25191.993409 eV Core-core repulsion = 21335.717162 eV Total energy + Delta-G solvation = -3856.276246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25422 -38.51300 -38.14736 -37.12852 -34.88020 -33.87038 -32.51796 -31.43663 -31.17032 -28.64304 -27.42133 -26.66409 -24.84606 -23.67748 -22.94101 -20.95518 -20.37094 -19.26802 -19.04194 -18.01567 -17.89150 -17.31314 -16.67487 -16.08066 -15.83380 -15.56504 -15.30122 -14.76562 -14.48999 -14.39532 -14.06577 -13.76823 -13.53133 -13.40158 -13.26797 -13.03420 -12.91592 -12.75535 -12.68275 -12.51030 -12.13604 -11.96610 -11.59383 -11.54848 -11.22050 -11.10827 -11.08058 -10.97970 -10.91094 -10.39827 -10.22486 -10.15600 -9.51456 -9.32030 -9.12106 -8.71401 -8.47157 -8.07398 -7.96384 -6.42127 -3.83042 0.68611 1.34032 1.65241 2.26892 2.38939 3.03373 3.17445 3.26183 3.32175 3.90385 4.08929 4.30565 4.36688 4.51271 4.61340 4.69797 4.79376 4.84085 4.87654 5.00319 5.09430 5.12691 5.25133 5.27037 5.34827 5.42322 5.53609 5.58949 5.67691 5.70846 5.78775 5.84319 5.98113 6.01692 6.04397 6.09539 6.11766 6.21554 6.26822 7.19354 7.21213 7.54732 7.64899 7.96782 8.05849 8.60781 9.17345 9.53896 10.05232 10.75570 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.048443 B = 0.001313 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.862332 B =21316.103703 C =21511.552486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.125 3.875 19 N -0.729 5.729 20 C 0.512 3.488 21 O -0.531 6.531 22 C -0.083 4.083 23 C -0.084 4.084 24 C -0.121 4.121 25 C -0.213 4.213 26 S 0.094 5.906 27 C -0.200 4.200 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.349 0.651 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.139 0.861 44 H 0.164 0.836 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -0.684 -31.729 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.381 5.381 20 C 0.297 3.703 21 O -0.407 6.407 22 C -0.125 4.125 23 C -0.097 4.097 24 C -0.152 4.152 25 C -0.348 4.348 26 S 0.358 5.642 27 C -0.335 4.335 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.157 0.843 44 H 0.181 0.819 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.174 -1.504 -32.903 32.958 hybrid contribution -0.395 0.502 2.184 2.275 sum -1.569 -1.003 -30.719 30.775 Atomic orbital electron populations 1.21901 0.94756 1.02023 1.02279 1.21363 0.96426 1.01173 0.93086 0.89268 1.21882 1.00789 0.94410 0.89356 1.60087 1.21008 1.49054 1.00025 1.21673 1.01197 0.95378 0.90005 1.19811 0.85623 0.87933 0.84041 1.90515 1.44412 1.26212 1.85722 1.41865 1.49457 1.24242 1.04432 1.19709 1.32871 1.06780 0.83619 0.87915 1.25266 0.96882 0.96656 0.99112 1.69619 1.38796 1.21799 1.24062 0.85853 0.78138 0.79953 0.80320 1.20433 1.20914 1.19399 1.21370 1.00244 0.95194 0.83054 1.46022 1.58254 1.28055 1.05811 1.20539 0.79561 0.85846 0.84332 1.90739 1.39113 1.24254 1.86591 1.20376 1.03032 0.99453 0.89665 1.18312 0.94772 0.99268 0.97341 1.20019 0.96729 1.02080 0.96332 1.25539 1.03283 1.02753 1.03211 1.84250 1.09359 1.42064 1.28539 1.25414 1.04672 1.02788 1.00644 0.92686 0.91416 0.92736 0.95206 0.90777 0.83074 0.93865 0.89549 0.77442 0.91871 0.91465 0.91270 0.76423 0.87725 0.87892 0.84333 0.81869 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.84 37.16 0.33 -0.99 16 2 C -0.10 -0.94 2.63 -90.62 -0.24 -1.18 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.07 0.76 5.14 -3.83 -0.02 0.74 16 5 N -0.67 -10.41 6.12 -115.06 -0.70 -11.11 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.37 7.82 -10.99 -0.09 10.29 16 8 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 13 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 14 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 C 0.13 1.13 5.06 -4.04 -0.02 1.11 16 19 N -0.73 -5.48 5.28 -60.29 -0.32 -5.80 16 20 C 0.51 4.72 7.82 -10.98 -0.09 4.64 16 21 O -0.53 -7.32 16.03 5.56 0.09 -7.23 16 22 C -0.08 -0.50 5.96 -29.03 -0.17 -0.67 16 23 C -0.08 -0.68 4.29 -106.24 -0.46 -1.14 16 24 C -0.12 -0.97 9.98 -41.21 -0.41 -1.38 16 25 C -0.21 -1.59 11.23 29.04 0.33 -1.26 16 26 S 0.09 0.71 23.34 -107.50 -2.51 -1.80 16 27 C -0.20 -1.59 10.98 29.04 0.32 -1.27 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.68 6.68 -51.92 -0.35 0.34 16 30 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.35 5.56 6.68 -39.29 -0.26 5.30 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.40 2.01 7.65 -40.82 -0.31 1.69 16 41 H 0.10 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.10 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -34.41 393.99 -9.19 -43.60 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.62 Total: 12.54 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.79 Total: 1.72 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.36 Total: -55.04 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.18 Total: -22.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.41 -9.19 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319153446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.278 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds