Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47341 * 239.99962 * 2 1 3 5 5 N 1.46506 * 109.47289 * 64.99653 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 60.00457 * 10 8 6 12 12 H 1.48506 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47236 * 300.00219 * 10 8 6 14 14 C 1.53001 * 109.47580 * 119.99701 * 2 1 3 15 15 N 1.46498 * 109.47138 * 295.00597 * 14 2 1 16 16 C 1.34776 * 120.00343 * 179.97438 * 15 14 2 17 17 O 1.21288 * 119.99422 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46818 * 179.97438 * 18 16 15 20 20 N 1.46503 * 109.46897 * 179.97438 * 19 18 16 21 21 C 1.34776 * 120.00304 * 180.02562 * 20 19 18 22 22 O 1.21645 * 119.99656 * 359.97438 * 21 20 19 23 23 C 1.47180 * 120.00558 * 180.02562 * 21 20 19 24 24 C 1.44427 * 123.46588 * 179.72693 * 23 21 20 25 25 C 1.32773 * 113.08582 * 179.80735 * 24 23 21 26 26 S 1.75503 * 110.57382 * 0.44444 * 25 24 23 27 27 C 1.36018 * 123.45798 * 0.02562 * 23 21 20 28 28 H 1.08994 * 109.47281 * 60.00551 * 1 2 3 29 29 H 1.09006 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47031 * 299.99699 * 1 2 3 31 31 H 1.09001 * 109.47289 * 304.99525 * 4 2 1 32 32 H 1.09004 * 109.47261 * 184.99781 * 4 2 1 33 33 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 34 34 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46763 * 55.00309 * 14 2 1 36 36 H 1.08998 * 109.47451 * 175.00408 * 14 2 1 37 37 H 0.97001 * 119.99817 * 359.97438 * 15 14 2 38 38 H 1.08994 * 109.47231 * 300.00109 * 18 16 15 39 39 H 1.08998 * 109.46917 * 60.00063 * 18 16 15 40 40 H 1.08995 * 109.47327 * 299.99532 * 19 18 16 41 41 H 1.08998 * 109.47281 * 60.00340 * 19 18 16 42 42 H 0.97001 * 119.99856 * 359.97438 * 20 19 18 43 43 H 1.08000 * 123.45434 * 0.02562 * 24 23 21 44 44 H 1.07996 * 124.71117 * 180.18170 * 25 24 23 45 45 H 1.07999 * 124.59263 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 2.0011 -0.4208 -3.6856 7 1 2.5615 -1.3386 -3.7865 8 6 1.6334 0.2957 -4.8162 9 7 0.9500 1.4138 -4.6932 10 14 2.1096 -0.3262 -6.5120 11 1 1.5171 -1.6702 -6.7308 12 1 1.6019 0.6131 -7.5442 13 1 3.5887 -0.4155 -6.6091 14 6 2.0401 -0.7212 1.2493 15 7 1.6525 0.0354 2.4424 16 6 1.9956 -0.4134 3.6660 17 8 2.6250 -1.4440 3.7793 18 6 1.5974 0.3651 4.8933 19 6 2.1063 -0.3568 6.1425 20 7 1.7197 0.4004 7.3356 21 6 2.0629 -0.0484 8.5592 22 8 2.6934 -1.0824 8.6730 23 6 1.6741 0.7120 9.7579 24 6 1.9969 0.2978 11.1033 25 6 1.5495 1.1385 12.0284 26 16 0.6954 2.4783 11.2829 27 6 0.9686 1.8741 9.7127 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 0.6933 1.9148 -5.4831 35 1 1.6055 -1.7198 1.2952 36 1 3.1264 -0.7993 1.2056 37 1 1.1488 0.8594 2.3517 38 1 2.0326 1.3634 4.8474 39 1 0.5111 0.4440 4.9368 40 1 1.6706 -1.3548 6.1883 41 1 3.1925 -0.4361 6.0992 42 1 1.2173 1.2252 7.2449 43 1 2.5489 -0.6016 11.3331 44 1 1.6879 1.0130 13.0921 45 1 0.6271 2.3491 8.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319202520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -42.823237 kcal Electronic energy + Delta-G solvation = -25041.515739 eV Core-core repulsion = 21185.501869 eV Total energy + Delta-G solvation = -3856.013870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39586 -39.77300 -37.34428 -36.92642 -35.51651 -34.41253 -32.62697 -31.73745 -30.21839 -29.75722 -26.76289 -25.87581 -25.22543 -23.78804 -22.34931 -21.73301 -20.71197 -20.01940 -19.50986 -18.62561 -17.67418 -17.27909 -16.88999 -16.40476 -16.03042 -15.66562 -15.40332 -14.95201 -14.75551 -14.54637 -13.88164 -13.87044 -13.63563 -13.59427 -13.51449 -13.19795 -13.01841 -12.92574 -12.63386 -12.35980 -12.28679 -12.07197 -11.82683 -11.65609 -11.09066 -10.92593 -10.73003 -10.60638 -10.47125 -10.36548 -10.14130 -9.93499 -9.68229 -9.64006 -9.49591 -9.10521 -8.96507 -8.88922 -6.94369 -5.78831 -3.07208 0.22126 0.99038 1.36628 1.52824 2.48328 2.56014 2.96397 3.23351 3.43695 3.47965 3.49063 4.14938 4.27484 4.52255 4.57810 4.64016 4.64453 4.70760 4.83990 4.98593 5.06268 5.17809 5.27046 5.34222 5.49627 5.53627 5.56113 5.65315 5.74092 5.77174 5.91999 5.94835 5.97191 6.07269 6.19938 6.35006 6.42190 6.61705 6.74312 6.83654 7.03131 7.37794 7.68637 7.80888 8.08512 8.40349 9.51661 10.08600 10.43484 11.44103 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036212 B = 0.001322 C = 0.001285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.048055 B =21178.579134 C =21777.356440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.724 5.724 16 C 0.514 3.486 17 O -0.538 6.538 18 C -0.155 4.155 19 C 0.135 3.865 20 N -0.727 5.727 21 C 0.576 3.424 22 O -0.529 6.529 23 C -0.152 4.152 24 C -0.086 4.086 25 C -0.235 4.235 26 S 0.188 5.812 27 C -0.214 4.214 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.155 0.845 44 H 0.171 0.829 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 5.669 34.911 35.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.299 3.701 17 O -0.415 6.415 18 C -0.195 4.195 19 C 0.012 3.988 20 N -0.380 5.380 21 C 0.361 3.639 22 O -0.407 6.407 23 C -0.171 4.171 24 C -0.115 4.115 25 C -0.370 4.370 26 S 0.453 5.547 27 C -0.353 4.353 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.232 0.768 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.289 5.325 35.480 36.028 hybrid contribution 0.242 -0.365 -1.800 1.852 sum -3.047 4.960 33.680 34.180 Atomic orbital electron populations 1.21792 0.94666 1.01957 1.01451 1.21553 0.96698 1.00484 0.94212 0.90540 1.20580 0.96642 0.94227 0.85373 1.42321 1.66975 1.27644 1.00566 1.19202 1.28805 1.05466 0.83676 0.91195 1.24726 1.00962 0.97387 0.97851 1.69644 1.43532 1.16573 1.28616 0.86253 0.78045 0.77717 0.84093 1.21250 1.21685 1.21254 1.21443 1.00235 0.95303 0.82831 1.46057 1.57623 1.27905 1.05939 1.20237 0.79680 0.85714 0.84462 1.90763 1.39687 1.24355 1.86667 1.21812 1.03693 1.00920 0.93087 1.21066 1.01506 0.95179 0.81089 1.45819 1.58443 1.27841 1.05854 1.17577 0.79271 0.84589 0.82415 1.90840 1.39488 1.23795 1.86527 1.20328 1.05211 0.96917 0.94623 1.21177 1.00086 1.00664 0.89536 1.25559 1.07532 0.99874 1.04063 1.83156 1.52286 1.24493 0.94727 1.25697 1.04668 1.00512 1.04387 0.91132 0.92807 0.93958 0.95983 0.96113 0.78231 0.93491 0.91251 0.91258 0.76465 0.88111 0.88136 0.90170 0.90170 0.76772 0.82720 0.81177 0.81229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.64 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.05 5.33 -59.90 -0.32 -18.37 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 15 N -0.72 -7.40 5.28 -60.29 -0.32 -7.72 16 16 C 0.51 5.64 7.83 -10.99 -0.09 5.55 16 17 O -0.54 -8.37 15.98 5.55 0.09 -8.28 16 18 C -0.15 -1.00 5.81 -27.88 -0.16 -1.16 16 19 C 0.14 1.21 4.96 -4.04 -0.02 1.19 16 20 N -0.73 -5.22 5.52 -61.46 -0.34 -5.56 16 21 C 0.58 5.80 7.79 -12.63 -0.10 5.70 16 22 O -0.53 -7.61 16.80 5.24 0.09 -7.52 16 23 C -0.15 -1.17 5.98 -104.63 -0.63 -1.80 16 24 C -0.09 -0.62 10.10 -39.02 -0.39 -1.01 16 25 C -0.24 -1.18 11.12 28.86 0.32 -0.86 16 26 S 0.19 0.75 23.02 -107.50 -2.48 -1.72 16 27 C -0.21 -1.04 10.38 29.94 0.31 -0.73 16 28 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 3.06 7.65 -40.82 -0.31 2.74 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.40 1.45 6.97 -40.82 -0.28 1.17 16 43 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.17 0.34 7.01 -52.49 -0.37 -0.03 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -36.28 393.90 -9.18 -45.46 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.61 Total: 6.84 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.94 Total: 0.79 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.25 Total: -58.79 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.18 Total: -15.80 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.48 Total: -1.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.28 -9.18 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.636 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds