Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47341 * 239.99962 * 2 1 3 5 5 N 1.46506 * 109.47289 * 64.99653 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47312 * 60.00457 * 10 8 6 12 12 H 1.48506 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47236 * 300.00219 * 10 8 6 14 14 C 1.53001 * 109.47580 * 119.99701 * 2 1 3 15 15 N 1.46498 * 109.47138 * 295.00597 * 14 2 1 16 16 C 1.34776 * 120.00343 * 179.97438 * 15 14 2 17 17 O 1.21288 * 119.99422 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46818 * 179.97438 * 18 16 15 20 20 N 1.46503 * 109.46897 * 179.97438 * 19 18 16 21 21 C 1.34776 * 120.00304 * 180.02562 * 20 19 18 22 22 O 1.21645 * 119.99656 * 359.97438 * 21 20 19 23 23 C 1.47180 * 120.00558 * 180.02562 * 21 20 19 24 24 C 1.44427 * 123.46588 * 179.72693 * 23 21 20 25 25 C 1.32773 * 113.08582 * 179.80735 * 24 23 21 26 26 S 1.75503 * 110.57382 * 0.44444 * 25 24 23 27 27 C 1.36018 * 123.45798 * 0.02562 * 23 21 20 28 28 H 1.08994 * 109.47281 * 60.00551 * 1 2 3 29 29 H 1.09006 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47031 * 299.99699 * 1 2 3 31 31 H 1.09001 * 109.47289 * 304.99525 * 4 2 1 32 32 H 1.09004 * 109.47261 * 184.99781 * 4 2 1 33 33 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 34 34 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46763 * 55.00309 * 14 2 1 36 36 H 1.08998 * 109.47451 * 175.00408 * 14 2 1 37 37 H 0.97001 * 119.99817 * 359.97438 * 15 14 2 38 38 H 1.08994 * 109.47231 * 300.00109 * 18 16 15 39 39 H 1.08998 * 109.46917 * 60.00063 * 18 16 15 40 40 H 1.08995 * 109.47327 * 299.99532 * 19 18 16 41 41 H 1.08998 * 109.47281 * 60.00340 * 19 18 16 42 42 H 0.97001 * 119.99856 * 359.97438 * 20 19 18 43 43 H 1.08000 * 123.45434 * 0.02562 * 24 23 21 44 44 H 1.07996 * 124.71117 * 180.18170 * 25 24 23 45 45 H 1.07999 * 124.59263 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 2.0011 -0.4208 -3.6856 7 1 2.5615 -1.3386 -3.7865 8 6 1.6334 0.2957 -4.8162 9 7 0.9500 1.4138 -4.6932 10 14 2.1096 -0.3262 -6.5120 11 1 1.5171 -1.6702 -6.7308 12 1 1.6019 0.6131 -7.5442 13 1 3.5887 -0.4155 -6.6091 14 6 2.0401 -0.7212 1.2493 15 7 1.6525 0.0354 2.4424 16 6 1.9956 -0.4134 3.6660 17 8 2.6250 -1.4440 3.7793 18 6 1.5974 0.3651 4.8933 19 6 2.1063 -0.3568 6.1425 20 7 1.7197 0.4004 7.3356 21 6 2.0629 -0.0484 8.5592 22 8 2.6934 -1.0824 8.6730 23 6 1.6741 0.7120 9.7579 24 6 1.9969 0.2978 11.1033 25 6 1.5495 1.1385 12.0284 26 16 0.6954 2.4783 11.2829 27 6 0.9686 1.8741 9.7127 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 1.1488 0.8594 -2.3517 34 1 0.6933 1.9148 -5.4831 35 1 1.6055 -1.7198 1.2952 36 1 3.1264 -0.7993 1.2056 37 1 1.1488 0.8594 2.3517 38 1 2.0326 1.3634 4.8474 39 1 0.5111 0.4440 4.9368 40 1 1.6706 -1.3548 6.1883 41 1 3.1925 -0.4361 6.0992 42 1 1.2173 1.2252 7.2449 43 1 2.5489 -0.6016 11.3331 44 1 1.6879 1.0130 13.0921 45 1 0.6271 2.3491 8.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319202520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -70.481552 kcal Electronic energy + Delta-G solvation = -25042.715093 eV Core-core repulsion = 21185.501869 eV Total energy + Delta-G solvation = -3857.213224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16077 -40.64646 -38.30219 -37.80039 -36.35264 -35.92615 -34.13118 -32.56328 -31.76649 -30.40714 -27.83544 -27.24817 -26.14973 -24.82918 -23.83437 -22.36940 -21.66231 -21.16018 -20.22582 -19.20262 -19.02763 -18.26194 -17.79838 -17.25160 -17.08598 -16.43687 -16.41749 -16.32256 -15.76925 -15.56006 -15.38171 -15.10376 -14.75388 -14.49225 -14.18356 -14.07296 -13.93918 -13.73525 -13.57568 -13.52912 -13.35156 -12.97258 -12.90745 -12.77631 -12.47871 -12.21483 -12.16409 -12.09860 -11.98312 -11.70725 -11.64571 -11.16146 -10.93693 -10.90217 -10.30258 -10.08046 -9.98110 -9.34290 -8.99129 -7.95515 -5.23493 -0.20556 0.64254 0.96786 0.98518 1.47999 1.50379 1.56520 1.63615 1.84422 2.30829 2.43629 2.58020 3.38192 3.58898 3.74487 3.86240 3.94131 3.97529 4.00615 4.07539 4.11214 4.31231 4.35877 4.47160 4.52167 4.56142 4.71339 4.81027 4.83062 4.83934 4.91749 4.95400 5.06669 5.13717 5.15213 5.25772 5.31064 5.34925 5.43162 5.49570 5.51388 6.27253 6.46346 6.57569 7.15774 7.26833 7.34407 8.09469 8.34287 9.27566 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036212 B = 0.001322 C = 0.001285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.048055 B =21178.579134 C =21777.356440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.251 4.251 7 H 0.072 0.928 8 C -0.071 4.071 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.137 3.863 15 N -0.711 5.711 16 C 0.511 3.489 17 O -0.591 6.591 18 C -0.136 4.136 19 C 0.139 3.861 20 N -0.707 5.707 21 C 0.571 3.429 22 O -0.588 6.588 23 C -0.186 4.186 24 C -0.116 4.116 25 C -0.236 4.236 26 S 0.244 5.756 27 C -0.202 4.202 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.418 0.582 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.419 0.581 43 H 0.138 0.862 44 H 0.190 0.810 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 7.988 36.130 37.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.206 1.206 14 C 0.012 3.988 15 N -0.363 5.363 16 C 0.298 3.702 17 O -0.471 6.471 18 C -0.176 4.176 19 C 0.014 3.986 20 N -0.360 5.360 21 C 0.358 3.642 22 O -0.470 6.470 23 C -0.204 4.204 24 C -0.144 4.144 25 C -0.371 4.371 26 S 0.510 5.490 27 C -0.340 4.340 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.257 0.743 43 H 0.156 0.844 44 H 0.207 0.793 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.772 7.692 36.715 37.814 hybrid contribution 0.672 -1.048 -2.071 2.416 sum -4.101 6.644 34.644 35.513 Atomic orbital electron populations 1.21731 0.93738 1.01850 1.01948 1.21325 0.97241 1.00086 0.92565 0.90048 1.20741 0.96448 0.94148 0.85892 1.42474 1.66836 1.27792 1.01250 1.19593 1.28107 1.05367 0.85184 0.91038 1.25503 1.01584 0.97855 1.01374 1.69786 1.44934 1.17745 1.29190 0.85248 0.77868 0.77194 0.79662 1.20552 1.21898 1.20570 1.21104 0.99379 0.95068 0.83263 1.45866 1.57434 1.28160 1.04889 1.21006 0.78454 0.85198 0.85547 1.90756 1.42088 1.26923 1.87375 1.21753 1.05991 1.00971 0.88873 1.20845 0.99804 0.94896 0.83015 1.45574 1.57744 1.28145 1.04514 1.18066 0.78364 0.84035 0.83734 1.90802 1.42357 1.26462 1.87386 1.20157 1.08111 0.98503 0.93621 1.21196 1.01626 1.01230 0.90377 1.25851 1.06596 0.99810 1.04872 1.83037 1.50268 1.22516 0.93184 1.26102 1.02358 0.99021 1.06566 0.93956 0.93238 0.90044 0.96329 0.96460 0.79003 0.93936 0.92112 0.92455 0.74420 0.84552 0.84422 0.92861 0.92962 0.74268 0.84418 0.79266 0.78093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.94 71.98 0.64 -2.92 16 2 C -0.09 -2.63 2.46 -10.79 -0.03 -2.65 16 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.15 6.04 5.65 86.38 0.49 6.52 16 5 N -0.74 -36.82 5.33 -343.44 -1.83 -38.65 16 6 C -0.25 -14.01 9.99 84.04 0.84 -13.17 16 7 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 8 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 9 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 10 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 C 0.14 3.42 5.06 86.38 0.44 3.86 16 15 N -0.71 -12.77 5.28 -463.06 -2.45 -15.22 16 16 C 0.51 10.35 7.83 87.66 0.69 11.04 16 17 O -0.59 -18.63 15.98 -3.05 -0.05 -18.68 16 18 C -0.14 -1.33 5.81 29.85 0.17 -1.15 16 19 C 0.14 2.43 4.96 86.38 0.43 2.86 16 20 N -0.71 -9.24 5.52 -466.60 -2.58 -11.82 16 21 C 0.57 11.79 7.79 86.59 0.67 12.46 16 22 O -0.59 -18.43 16.80 -4.17 -0.07 -18.50 16 23 C -0.19 -2.75 5.98 -19.87 -0.12 -2.87 16 24 C -0.12 -1.72 10.10 22.67 0.23 -1.49 16 25 C -0.24 -2.04 11.12 66.64 0.74 -1.30 16 26 S 0.24 1.18 23.02 -56.49 -1.30 -0.12 16 27 C -0.20 -1.38 10.38 67.30 0.70 -0.68 16 28 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.08 1.49 7.18 -2.39 -0.02 1.47 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.02 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.38 19.52 6.85 -92.71 -0.64 18.88 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.42 4.68 7.65 -92.71 -0.71 3.97 16 38 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.42 1.63 6.97 -92.71 -0.65 0.98 16 43 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.20 -0.12 7.01 -2.91 -0.02 -0.14 16 Total: -1.00 -83.80 393.90 -0.56 -84.36 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.96 Total: 21.46 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.36 Total: 6.96 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.57 Total: -123.41 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.12 Total: -37.18 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.30 Total: -0.12 kcal Total: -83.80 -0.56 -84.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.879 kcal (2) G-P(sol) polarization free energy of solvation -83.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds