Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.46927 * 179.97438 * 18 16 15 20 20 N 1.46497 * 109.47413 * 179.97438 * 19 18 16 21 21 C 1.34781 * 120.00434 * 180.02562 * 20 19 18 22 22 O 1.21641 * 119.99343 * 0.02562 * 21 20 19 23 23 C 1.47182 * 120.00049 * 180.02562 * 21 20 19 24 24 C 1.44431 * 123.45898 * 179.72986 * 23 21 20 25 25 C 1.32769 * 113.08189 * 179.81063 * 24 23 21 26 26 S 1.75501 * 110.57819 * 0.44201 * 25 24 23 27 27 C 1.36013 * 123.46470 * 0.02877 * 23 21 20 28 28 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 30 30 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 31 31 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 32 32 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 36 36 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 37 37 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 38 38 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 39 39 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 40 40 H 1.09001 * 109.47514 * 300.00539 * 19 18 16 41 41 H 1.09011 * 109.46909 * 60.00241 * 19 18 16 42 42 H 0.96999 * 120.00212 * 0.02562 * 20 19 18 43 43 H 1.08003 * 123.45825 * 359.97438 * 24 23 21 44 44 H 1.08002 * 124.70997 * 180.18281 * 25 24 23 45 45 H 1.07995 * 124.58520 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 6 2.1092 -0.3550 -6.1424 20 7 1.7216 0.4015 -7.3355 21 6 2.0655 -0.0469 -8.5591 22 8 2.6974 -1.0801 -8.6727 23 6 1.6766 0.7135 -9.7578 24 6 2.0099 0.3055 -11.1026 25 6 1.5534 1.1408 -12.0281 26 16 0.6992 2.4805 -11.2827 27 6 0.9714 1.8757 -9.7126 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.1262 -0.7996 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 1.1482 0.8590 2.3517 34 1 0.7075 1.9234 5.4823 35 1 3.1263 -0.7995 -1.2056 36 1 1.6054 -1.7197 -1.2952 37 1 1.1489 0.8595 -2.3517 38 1 0.5120 0.4439 -4.9372 39 1 2.0330 1.3641 -4.8469 40 1 3.1955 -0.4330 -6.0981 41 1 1.6749 -1.3538 -6.1889 42 1 1.2175 1.2252 -7.2450 43 1 2.5704 -0.5887 -11.3318 44 1 1.6923 1.0155 -13.0918 45 1 0.6309 2.3512 -8.8047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319202521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -42.919145 kcal Electronic energy + Delta-G solvation = -25041.516496 eV Core-core repulsion = 21185.498468 eV Total energy + Delta-G solvation = -3856.018028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39657 -39.77468 -37.34491 -36.92794 -35.51710 -34.41463 -32.62836 -31.73756 -30.21944 -29.75791 -26.76338 -25.87673 -25.22680 -23.78856 -22.35187 -21.73278 -20.71233 -20.02031 -19.51043 -18.62580 -17.67485 -17.27997 -16.89149 -16.40504 -16.03140 -15.66595 -15.40375 -14.95323 -14.75518 -14.54711 -13.88424 -13.86908 -13.63831 -13.59744 -13.51296 -13.19946 -13.01433 -12.92645 -12.63657 -12.36121 -12.28679 -12.07580 -11.82741 -11.65633 -11.09200 -10.93437 -10.74349 -10.59920 -10.47144 -10.36501 -10.12083 -9.93144 -9.68755 -9.64043 -9.49588 -9.10562 -8.96512 -8.89566 -6.94466 -5.79161 -3.07522 0.22131 0.99030 1.36606 1.52821 2.48346 2.56016 2.96377 3.23336 3.42809 3.48286 3.49717 4.14923 4.27474 4.52226 4.57586 4.63984 4.64432 4.70735 4.83974 4.98540 5.06216 5.17744 5.27022 5.34118 5.49575 5.53597 5.55968 5.65269 5.74077 5.77118 5.91931 5.94745 5.97201 6.07148 6.19803 6.34894 6.42132 6.61562 6.74165 6.83597 7.03103 7.37776 7.68941 7.80873 8.08489 8.39994 9.51422 10.08368 10.43166 11.43829 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036179 B = 0.001322 C = 0.001286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.744829 B =21177.628887 C =21775.670804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.724 5.724 16 C 0.514 3.486 17 O -0.538 6.538 18 C -0.155 4.155 19 C 0.135 3.865 20 N -0.727 5.727 21 C 0.576 3.424 22 O -0.529 6.529 23 C -0.152 4.152 24 C -0.086 4.086 25 C -0.235 4.235 26 S 0.188 5.812 27 C -0.214 4.214 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.401 0.599 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.155 0.845 44 H 0.171 0.829 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 5.625 -34.934 35.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.002 3.998 15 N -0.375 5.375 16 C 0.299 3.701 17 O -0.415 6.415 18 C -0.195 4.195 19 C 0.012 3.988 20 N -0.380 5.380 21 C 0.361 3.639 22 O -0.406 6.406 23 C -0.171 4.171 24 C -0.115 4.115 25 C -0.370 4.370 26 S 0.453 5.547 27 C -0.353 4.353 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.232 0.768 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.303 5.270 -35.507 36.047 hybrid contribution 0.249 -0.344 1.802 1.852 sum -3.055 4.926 -33.705 34.199 Atomic orbital electron populations 1.21792 0.94666 1.01957 1.01451 1.21555 0.96699 1.00483 0.94212 0.90538 1.20578 0.96642 0.94230 0.85370 1.42331 1.66905 1.27702 1.00585 1.19248 1.28755 1.05381 0.83679 0.91139 1.24726 1.01027 0.97341 0.97860 1.69653 1.43821 1.16366 1.28513 0.86180 0.77600 0.78047 0.84324 1.21718 1.21769 1.20732 1.21442 1.00237 0.95303 0.82833 1.46058 1.57615 1.27913 1.05943 1.20233 0.79682 0.85709 0.84462 1.90760 1.39660 1.24383 1.86661 1.21814 1.03685 1.00927 0.93090 1.21068 1.01488 0.95197 0.81092 1.45819 1.58340 1.27949 1.05852 1.17577 0.79279 0.84581 0.82414 1.90839 1.39443 1.23837 1.86526 1.20328 1.05138 0.96979 0.94636 1.21178 1.00017 1.00730 0.89538 1.25559 1.07403 1.00014 1.04054 1.83156 1.52426 1.24357 0.94721 1.25695 1.04763 1.00414 1.04392 0.92804 0.91137 0.93958 0.96110 0.95973 0.78230 0.93542 0.91260 0.91251 0.76464 0.88130 0.88117 0.90163 0.90180 0.76773 0.82719 0.81177 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.94 37.16 0.33 -1.64 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 6 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 15 N -0.72 -7.40 5.28 -60.30 -0.32 -7.72 16 16 C 0.51 5.64 7.83 -10.99 -0.09 5.55 16 17 O -0.54 -8.36 15.98 5.56 0.09 -8.28 16 18 C -0.15 -1.00 5.81 -27.88 -0.16 -1.16 16 19 C 0.14 1.21 4.96 -4.04 -0.02 1.19 16 20 N -0.73 -5.22 5.52 -61.45 -0.34 -5.56 16 21 C 0.58 5.80 7.79 -12.63 -0.10 5.70 16 22 O -0.53 -7.61 16.80 5.24 0.09 -7.52 16 23 C -0.15 -1.17 5.98 -104.63 -0.63 -1.80 16 24 C -0.09 -0.62 10.10 -39.02 -0.39 -1.01 16 25 C -0.24 -1.18 11.12 28.86 0.32 -0.86 16 26 S 0.19 0.75 23.02 -107.50 -2.48 -1.72 16 27 C -0.21 -1.04 10.38 29.93 0.31 -0.73 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 3.05 7.66 -40.82 -0.31 2.74 16 38 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.08 0.88 8.10 -51.92 -0.42 0.46 16 42 H 0.40 1.45 6.97 -40.82 -0.28 1.17 16 43 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.17 0.34 7.01 -52.49 -0.37 -0.03 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -36.30 393.90 -9.18 -45.48 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.61 Total: 6.79 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.94 Total: 0.80 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.25 Total: -58.78 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.18 Total: -15.80 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.48 Total: -1.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.30 -9.18 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds