Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.46927 * 179.97438 * 18 16 15 20 20 N 1.46497 * 109.47413 * 179.97438 * 19 18 16 21 21 C 1.34781 * 120.00434 * 180.02562 * 20 19 18 22 22 O 1.21641 * 119.99343 * 0.02562 * 21 20 19 23 23 C 1.47182 * 120.00049 * 180.02562 * 21 20 19 24 24 C 1.44431 * 123.45898 * 179.72986 * 23 21 20 25 25 C 1.32769 * 113.08189 * 179.81063 * 24 23 21 26 26 S 1.75501 * 110.57819 * 0.44201 * 25 24 23 27 27 C 1.36013 * 123.46470 * 0.02877 * 23 21 20 28 28 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 30 30 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 31 31 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 32 32 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 36 36 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 37 37 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 38 38 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 39 39 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 40 40 H 1.09001 * 109.47514 * 300.00539 * 19 18 16 41 41 H 1.09011 * 109.46909 * 60.00241 * 19 18 16 42 42 H 0.96999 * 120.00212 * 0.02562 * 20 19 18 43 43 H 1.08003 * 123.45825 * 359.97438 * 24 23 21 44 44 H 1.08002 * 124.70997 * 180.18281 * 25 24 23 45 45 H 1.07995 * 124.58520 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 6 2.1092 -0.3550 -6.1424 20 7 1.7216 0.4015 -7.3355 21 6 2.0655 -0.0469 -8.5591 22 8 2.6974 -1.0801 -8.6727 23 6 1.6766 0.7135 -9.7578 24 6 2.0099 0.3055 -11.1026 25 6 1.5534 1.1408 -12.0281 26 16 0.6992 2.4805 -11.2827 27 6 0.9714 1.8757 -9.7126 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.1262 -0.7996 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 1.1482 0.8590 2.3517 34 1 0.7075 1.9234 5.4823 35 1 3.1263 -0.7995 -1.2056 36 1 1.6054 -1.7197 -1.2952 37 1 1.1489 0.8595 -2.3517 38 1 0.5120 0.4439 -4.9372 39 1 2.0330 1.3641 -4.8469 40 1 3.1955 -0.4330 -6.0981 41 1 1.6749 -1.3538 -6.1889 42 1 1.2175 1.2252 -7.2450 43 1 2.5704 -0.5887 -11.3318 44 1 1.6923 1.0155 -13.0918 45 1 0.6309 2.3512 -8.8047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319202521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -70.595380 kcal Electronic energy + Delta-G solvation = -25042.716628 eV Core-core repulsion = 21185.498468 eV Total energy + Delta-G solvation = -3857.218160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16146 -40.64754 -38.30313 -37.80100 -36.35302 -35.92792 -34.13208 -32.56328 -31.76714 -30.40728 -27.83503 -27.25004 -26.15030 -24.83033 -23.83528 -22.36899 -21.66215 -21.16053 -20.22583 -19.20468 -19.02783 -18.26243 -17.79872 -17.25206 -17.08681 -16.43740 -16.41664 -16.32268 -15.77074 -15.56152 -15.38741 -15.09990 -14.75454 -14.49138 -14.18478 -14.07332 -13.93858 -13.73665 -13.57916 -13.52904 -13.35142 -12.97110 -12.90507 -12.81089 -12.47923 -12.17462 -12.16122 -12.09871 -11.98841 -11.70484 -11.64850 -11.16161 -10.94615 -10.90307 -10.30235 -10.08026 -9.98131 -9.34282 -8.99222 -7.95858 -5.23786 -0.20541 0.64258 0.96756 0.98552 1.47979 1.48936 1.57491 1.63677 1.84448 2.30824 2.43609 2.57745 3.38056 3.58917 3.74471 3.86230 3.94136 3.97536 4.00602 4.07529 4.11200 4.31236 4.35757 4.47146 4.52151 4.56161 4.71358 4.81070 4.83060 4.83913 4.91719 4.95458 5.06689 5.13708 5.15199 5.25793 5.31096 5.34966 5.43178 5.49711 5.51429 6.27112 6.46333 6.57598 7.15777 7.26851 7.34243 8.09270 8.33985 9.27445 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036179 B = 0.001322 C = 0.001286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.744829 B =21177.628887 C =21775.670804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.249 4.249 7 H 0.072 0.928 8 C -0.071 4.071 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.137 3.863 15 N -0.711 5.711 16 C 0.511 3.489 17 O -0.591 6.591 18 C -0.136 4.136 19 C 0.139 3.861 20 N -0.707 5.707 21 C 0.571 3.429 22 O -0.588 6.588 23 C -0.186 4.186 24 C -0.116 4.116 25 C -0.236 4.236 26 S 0.244 5.756 27 C -0.202 4.202 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.419 0.581 43 H 0.138 0.862 44 H 0.190 0.810 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 7.932 -36.163 37.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.099 0.901 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.381 4.381 7 H 0.090 0.910 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.197 1.197 14 C 0.012 3.988 15 N -0.364 5.364 16 C 0.298 3.702 17 O -0.471 6.471 18 C -0.176 4.176 19 C 0.014 3.986 20 N -0.360 5.360 21 C 0.358 3.642 22 O -0.470 6.470 23 C -0.204 4.204 24 C -0.144 4.144 25 C -0.371 4.371 26 S 0.510 5.490 27 C -0.340 4.340 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.257 0.743 43 H 0.156 0.844 44 H 0.207 0.793 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.796 7.625 -36.751 37.839 hybrid contribution 0.682 -1.022 2.077 2.413 sum -4.114 6.603 -34.675 35.537 Atomic orbital electron populations 1.21731 0.93732 1.01857 1.01949 1.21326 0.97247 1.00081 0.92565 0.90055 1.20740 0.96453 0.94153 0.85885 1.42484 1.66763 1.27846 1.01267 1.19628 1.28023 1.05262 0.85185 0.91021 1.25500 1.01662 0.97814 1.01370 1.69792 1.45231 1.17540 1.29125 0.85178 0.77015 0.77914 0.79885 1.21423 1.21967 1.19726 1.21104 0.99379 0.95070 0.83264 1.45867 1.57425 1.28169 1.04893 1.21001 0.78458 0.85194 0.85546 1.90753 1.42061 1.26949 1.87369 1.21756 1.05979 1.00981 0.88878 1.20846 0.99794 0.94905 0.83016 1.45574 1.57645 1.28247 1.04513 1.18067 0.78371 0.84027 0.83733 1.90801 1.42311 1.26503 1.87385 1.20158 1.08029 0.98571 0.93635 1.21197 1.01536 1.01317 0.90380 1.25851 1.06473 0.99945 1.04862 1.83037 1.50406 1.22384 0.93177 1.26100 1.02454 0.98923 1.06570 0.93225 0.93955 0.90049 0.96452 0.96311 0.79000 0.93940 0.92460 0.92106 0.74420 0.84417 0.84559 0.92951 0.92876 0.74270 0.84416 0.79265 0.78095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.94 71.98 0.64 -2.91 16 2 C -0.09 -2.62 2.46 -10.79 -0.03 -2.65 16 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.15 6.03 5.65 86.38 0.49 6.52 16 5 N -0.74 -36.79 5.33 -343.46 -1.83 -38.62 16 6 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 7 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 8 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 9 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 10 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.14 3.42 5.06 86.38 0.44 3.85 16 15 N -0.71 -12.76 5.28 -463.07 -2.45 -15.21 16 16 C 0.51 10.35 7.83 87.66 0.69 11.03 16 17 O -0.59 -18.62 15.98 -3.02 -0.05 -18.67 16 18 C -0.14 -1.33 5.81 29.85 0.17 -1.15 16 19 C 0.14 2.43 4.96 86.38 0.43 2.86 16 20 N -0.71 -9.24 5.52 -466.58 -2.58 -11.82 16 21 C 0.57 11.78 7.79 86.59 0.67 12.46 16 22 O -0.59 -18.42 16.80 -4.16 -0.07 -18.49 16 23 C -0.19 -2.75 5.98 -19.87 -0.12 -2.87 16 24 C -0.12 -1.72 10.10 22.67 0.23 -1.49 16 25 C -0.24 -2.04 11.12 66.64 0.74 -1.30 16 26 S 0.24 1.18 23.02 -56.49 -1.30 -0.13 16 27 C -0.20 -1.38 10.38 67.30 0.70 -0.68 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 30 H 0.08 1.48 7.18 -2.38 -0.02 1.47 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.38 19.51 6.85 -92.70 -0.63 18.87 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.42 4.68 7.66 -92.70 -0.71 3.97 16 38 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.14 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 41 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 42 H 0.42 1.63 6.97 -92.71 -0.65 0.98 16 43 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.20 -0.12 7.01 -2.91 -0.02 -0.14 16 Total: -1.00 -83.83 393.90 -0.56 -84.39 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.96 Total: 21.31 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.36 Total: 7.02 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.57 Total: -123.39 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.12 Total: -37.16 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.30 Total: -0.13 kcal Total: -83.83 -0.56 -84.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319202521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.795 kcal (2) G-P(sol) polarization free energy of solvation -83.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds