Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35970 * 116.99811 * 2 1 4 4 C 1.37569 * 120.82658 * 180.25770 * 3 2 1 5 5 C 1.38035 * 114.24874 * 180.23157 * 4 3 2 6 6 C 1.47117 * 127.75860 * 179.87040 * 5 4 3 7 7 O 1.21629 * 119.99875 * 334.22144 * 6 5 4 8 8 N 1.34778 * 119.99843 * 153.95153 * 6 5 4 9 9 C 1.46922 * 120.63196 * 353.81938 * 8 6 5 10 10 C 1.53184 * 108.77866 * 233.58660 * 9 8 6 11 11 C 1.53041 * 109.31372 * 305.36975 * 10 9 8 12 12 C 1.53043 * 109.54165 * 61.35896 * 11 10 9 13 13 H 1.09005 * 109.48823 * 58.62072 * 12 11 10 14 14 C 1.52994 * 109.50057 * 178.68585 * 12 11 10 15 15 H 1.09003 * 109.47018 * 305.00264 * 14 12 11 16 16 C 1.52995 * 109.47210 * 65.00052 * 14 12 11 17 17 N 1.46499 * 109.47387 * 185.00603 * 14 12 11 18 18 C 1.36935 * 120.00340 * 155.00040 * 17 14 12 19 19 H 1.07998 * 119.99641 * 0.02562 * 18 17 14 20 20 C 1.38813 * 119.99836 * 179.97438 * 18 17 14 21 21 N 1.31617 * 120.00329 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99725 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47419 * 89.99957 * 22 20 18 24 24 H 1.48502 * 109.47069 * 209.99879 * 22 20 18 25 25 H 1.48499 * 109.47222 * 329.99798 * 22 20 18 26 26 C 1.46931 * 120.62812 * 173.54352 * 8 6 5 27 27 S 1.77230 * 104.48297 * 359.60749 * 5 4 3 28 28 N 1.30366 * 120.82172 * 0.03356 * 3 2 1 29 29 H 1.09001 * 109.47021 * 299.99684 * 1 2 3 30 30 H 1.08996 * 109.47112 * 59.99385 * 1 2 3 31 31 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 32 32 H 1.07996 * 122.87297 * 0.06389 * 4 3 2 33 33 H 1.08998 * 109.58523 * 353.37733 * 9 8 6 34 34 H 1.09005 * 109.58373 * 113.65498 * 9 8 6 35 35 H 1.09005 * 109.49939 * 65.31597 * 10 9 8 36 36 H 1.09002 * 109.50299 * 185.38280 * 10 9 8 37 37 H 1.08998 * 109.46277 * 181.38606 * 11 10 9 38 38 H 1.09002 * 109.46147 * 301.34043 * 11 10 9 39 39 H 1.09003 * 109.46957 * 60.00174 * 16 14 12 40 40 H 1.09002 * 109.47584 * 180.02562 * 16 14 12 41 41 H 1.08996 * 109.47470 * 300.00315 * 16 14 12 42 42 H 0.97004 * 119.99656 * 334.99220 * 17 14 12 43 43 H 0.96994 * 120.00455 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.58270 * 246.20059 * 26 8 6 45 45 H 1.09007 * 109.58520 * 6.62317 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3034 -0.0053 5 6 3.9005 2.5970 0.0005 6 6 5.3049 3.0354 -0.0002 7 8 6.1690 2.3088 0.4522 8 7 5.6345 4.2399 -0.5072 9 6 4.6273 5.0685 -1.1835 10 6 5.1538 5.4508 -2.5703 11 6 6.5230 6.1189 -2.4254 12 6 7.5078 5.1353 -1.7891 13 1 7.5816 4.2421 -2.4095 14 6 8.8844 5.7930 -1.6747 15 1 9.1993 6.1496 -2.6554 16 6 8.8069 6.9727 -0.7037 17 7 9.8537 4.8136 -1.1770 18 6 11.1852 4.9638 -1.4592 19 1 11.5209 5.8044 -2.0483 20 6 12.1036 4.0361 -0.9871 21 7 11.6947 3.0124 -0.2679 22 14 13.9200 4.2413 -1.3715 23 1 14.5634 5.0503 -0.3052 24 1 14.5660 2.9057 -1.4372 25 1 14.0749 4.9308 -2.6775 26 6 7.0066 4.7519 -0.3885 27 16 2.4470 3.6111 0.0011 28 7 1.3520 2.3149 0.0007 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0643 0.4375 -0.0107 33 1 3.7002 4.5048 -1.2873 34 1 4.4433 5.9699 -0.5989 35 1 5.2495 4.5544 -3.1830 36 1 4.4589 6.1435 -3.0452 37 1 6.8889 6.4142 -3.4088 38 1 6.4313 7.0015 -1.7924 39 1 8.4921 6.6161 0.2770 40 1 9.7876 7.4416 -0.6225 41 1 8.0858 7.7014 -1.0740 42 1 9.5522 4.0589 -0.6475 43 1 12.3363 2.3640 0.0616 44 1 7.0145 5.6292 0.2583 45 1 7.6498 3.9791 0.0325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319805826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -5.370769 kcal Electronic energy + Delta-G solvation = -27463.855828 eV Core-core repulsion = 23609.466020 eV Total energy + Delta-G solvation = -3854.389809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59057 -40.14433 -38.02442 -36.64621 -35.55052 -33.09225 -31.97572 -31.61904 -29.83993 -28.45024 -27.84898 -26.23547 -24.77979 -24.03004 -23.25594 -21.81081 -21.02867 -19.44881 -18.87416 -18.57251 -17.94219 -17.14065 -16.63912 -16.37308 -16.10474 -15.29906 -15.00016 -14.91443 -14.77019 -14.26743 -13.94269 -13.80324 -13.69075 -13.58024 -13.10078 -12.96487 -12.78990 -12.50918 -12.37038 -12.00192 -11.73856 -11.58392 -11.56790 -11.32618 -11.01918 -10.87391 -10.82198 -10.65807 -10.47246 -10.28732 -10.27835 -10.12522 -9.94785 -9.82540 -9.53391 -8.88079 -8.60301 -8.58240 -6.91983 -5.70368 -3.00181 -0.09938 0.82240 1.23923 1.97614 2.50368 2.89957 3.05400 3.46509 3.51307 3.53516 4.13459 4.50362 4.60184 4.65085 4.79123 4.82357 4.88846 4.93366 4.97848 5.15399 5.19004 5.25530 5.32548 5.42426 5.57304 5.60779 5.73614 5.77614 5.79560 5.81576 5.92216 6.04270 6.09220 6.21855 6.31574 6.32952 6.49279 6.60501 6.69879 6.71746 6.88946 7.11166 7.24758 7.74339 7.96592 8.47190 9.58172 10.15882 10.49810 11.51697 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018166 B = 0.002695 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.989157 B =10388.277642 C =11536.830276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.309 3.691 4 C -0.132 4.132 5 C -0.173 4.173 6 C 0.586 3.414 7 O -0.500 6.500 8 N -0.599 5.599 9 C 0.093 3.907 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.104 4.104 13 H 0.077 0.923 14 C 0.180 3.820 15 H 0.050 0.950 16 C -0.170 4.170 17 N -0.725 5.725 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.117 3.883 27 S 0.295 5.705 28 N -0.528 5.528 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.052 2.532 -1.800 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.095 3.905 4 C -0.169 4.169 5 C -0.305 4.305 6 C 0.370 3.630 7 O -0.375 6.375 8 N -0.332 5.332 9 C -0.032 4.032 10 C -0.169 4.169 11 C -0.153 4.153 12 C -0.124 4.124 13 H 0.095 0.905 14 C 0.070 3.930 15 H 0.068 0.932 16 C -0.230 4.230 17 N -0.367 5.367 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.577 5.577 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 C -0.004 4.004 27 S 0.445 5.555 28 N -0.368 5.368 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.196 0.804 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.791 3.461 -1.593 26.071 hybrid contribution 1.582 -1.548 0.014 2.213 sum -24.210 1.914 -1.580 24.336 Atomic orbital electron populations 1.22981 0.76687 1.03643 1.02533 1.86324 1.23013 1.22655 1.88104 1.19883 0.89719 0.85290 0.95562 1.20796 0.92476 0.98644 1.04971 1.26100 0.99517 0.97607 1.07249 1.16751 0.84963 0.81834 0.79449 1.90940 1.48269 1.52502 1.45799 1.48027 1.12202 1.17101 1.55897 1.22183 0.90785 0.95625 0.94595 1.21888 0.97969 1.01484 0.95536 1.21628 0.93764 0.98395 1.01495 1.21884 0.95784 0.99202 0.95564 0.90495 1.20170 0.87121 0.89733 0.95988 0.93207 1.22589 1.00743 0.99153 1.00550 1.42494 1.03009 1.27837 1.63382 1.19203 0.83442 1.07091 1.27372 0.91253 1.24749 0.97897 0.97519 1.00743 1.69667 1.33279 1.14482 1.40275 0.86233 0.85724 0.76724 0.77740 1.21812 1.21846 1.20855 1.22097 0.79895 1.00376 0.98027 1.85050 0.89348 1.11765 1.69361 1.76388 1.27747 1.01716 1.30964 0.92121 0.92116 0.87967 0.80431 0.90268 0.90280 0.91311 0.90489 0.91306 0.91295 0.93229 0.92828 0.94263 0.78076 0.93487 0.90398 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.32 16 2 O -0.30 -3.09 10.52 -19.65 -0.21 -3.30 16 3 C 0.31 3.54 7.36 -18.42 -0.14 3.41 16 4 C -0.13 -1.58 10.18 -39.90 -0.41 -1.99 16 5 C -0.17 -2.15 6.09 -36.05 -0.22 -2.37 16 6 C 0.59 8.93 7.65 -12.66 -0.10 8.83 16 7 O -0.50 -9.79 16.45 5.25 0.09 -9.70 16 8 N -0.60 -8.07 2.97 -173.89 -0.52 -8.59 16 9 C 0.09 0.90 5.67 -3.72 -0.02 0.88 16 10 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 11 C -0.11 -1.29 4.89 -26.69 -0.13 -1.42 16 12 C -0.10 -1.61 2.28 -90.28 -0.21 -1.81 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.18 3.37 2.67 -67.94 -0.18 3.19 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.17 -2.84 8.76 37.15 0.33 -2.52 16 17 N -0.73 -17.83 5.06 -53.43 -0.27 -18.10 16 18 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 22 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.12 1.82 5.19 -3.49 -0.02 1.80 16 27 S 0.29 2.92 20.19 -107.50 -2.17 0.75 16 28 N -0.53 -5.96 11.03 29.19 0.32 -5.64 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.08 0.70 3.76 -24.91 -0.09 0.61 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.71 6.63 -51.93 -0.34 0.37 16 39 H 0.05 0.83 6.23 -51.93 -0.32 0.51 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 42 H 0.38 10.24 6.49 -40.82 -0.26 9.97 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.08 1.13 6.08 -51.93 -0.32 0.81 16 45 H 0.10 2.05 5.83 -51.93 -0.30 1.74 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -33.14 369.97 -8.10 -41.24 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.18 Total: 7.29 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.44 Total: 0.72 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.26 Total: -60.12 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.12 Total: -13.00 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.17 Total: 0.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.14 -8.10 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319805826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.873 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds