Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35963 * 117.00405 * 2 1 4 4 C 1.37569 * 120.83034 * 180.28811 * 3 2 1 5 5 C 1.38030 * 114.24849 * 180.21722 * 4 3 2 6 6 C 1.47123 * 127.75900 * 179.80815 * 5 4 3 7 7 O 1.21628 * 119.99679 * 41.49786 * 6 5 4 8 8 N 1.34775 * 119.99899 * 221.50450 * 6 5 4 9 9 C 1.46928 * 120.63119 * 356.29967 * 8 6 5 10 10 C 1.53197 * 108.77482 * 126.37038 * 9 8 6 11 11 C 1.53039 * 109.31017 * 54.63363 * 10 9 8 12 12 C 1.53041 * 109.52939 * 298.64505 * 11 10 9 13 13 H 1.09002 * 109.49272 * 301.40046 * 12 11 10 14 14 C 1.53005 * 109.49580 * 181.31081 * 12 11 10 15 15 H 1.08996 * 109.47319 * 299.99313 * 14 12 11 16 16 C 1.53000 * 109.47124 * 59.99839 * 14 12 11 17 17 N 1.46502 * 109.46881 * 179.97438 * 14 12 11 18 18 C 1.36940 * 120.00025 * 154.99842 * 17 14 12 19 19 H 1.08001 * 119.99676 * 359.97438 * 18 17 14 20 20 C 1.38809 * 119.99934 * 180.02562 * 18 17 14 21 21 N 1.31619 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47016 * 89.99697 * 22 20 18 24 24 H 1.48496 * 109.46883 * 209.99806 * 22 20 18 25 25 H 1.48503 * 109.46791 * 329.99881 * 22 20 18 26 26 C 1.46920 * 120.62968 * 176.28049 * 8 6 5 27 27 S 1.77234 * 104.48338 * 359.54639 * 5 4 3 28 28 N 1.30365 * 120.82017 * 359.97226 * 3 2 1 29 29 H 1.09000 * 109.47477 * 300.00088 * 1 2 3 30 30 H 1.09004 * 109.47183 * 60.00063 * 1 2 3 31 31 H 1.08997 * 109.47504 * 179.97438 * 1 2 3 32 32 H 1.07999 * 122.87304 * 0.04857 * 4 3 2 33 33 H 1.08996 * 109.58566 * 6.58758 * 9 8 6 34 34 H 1.08999 * 109.58445 * 246.15589 * 9 8 6 35 35 H 1.08998 * 109.49555 * 294.68928 * 10 9 8 36 36 H 1.08995 * 109.49992 * 174.58644 * 10 9 8 37 37 H 1.09002 * 109.46058 * 58.65609 * 11 10 9 38 38 H 1.09001 * 109.46189 * 178.62313 * 11 10 9 39 39 H 1.08996 * 109.47113 * 299.99399 * 16 14 12 40 40 H 1.08998 * 109.47587 * 60.00082 * 16 14 12 41 41 H 1.09005 * 109.46969 * 179.97438 * 16 14 12 42 42 H 0.96997 * 120.00024 * 334.99985 * 17 14 12 43 43 H 0.97007 * 119.99711 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.59103 * 353.41790 * 26 8 6 45 45 H 1.09000 * 109.58882 * 113.84398 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 -0.0059 5 6 3.9006 2.5967 -0.0004 6 6 5.3050 3.0351 -0.0005 7 8 6.1194 2.4666 -0.7025 8 7 5.6890 4.0665 0.7775 9 6 4.7030 4.8147 1.5692 10 6 5.1596 4.8372 3.0314 11 6 6.5823 5.3958 3.1088 12 6 7.5310 4.4903 2.3201 13 1 7.4934 3.4804 2.7285 14 6 8.9583 5.0314 2.4250 15 1 8.9954 6.0406 2.0152 16 6 9.3857 5.0613 3.8938 17 7 9.8661 4.1638 1.6704 18 6 11.0432 4.6645 1.1814 19 1 11.3020 5.6991 1.3518 20 6 11.9030 3.8426 0.4659 21 7 11.5872 2.5819 0.2578 22 14 13.5090 4.5255 -0.2005 23 1 14.5806 4.3473 0.8119 24 1 13.8769 3.8011 -1.4435 25 1 13.3460 5.9709 -0.4997 26 6 7.1015 4.4639 0.8502 27 16 2.4471 3.6109 -0.0009 28 7 1.3521 2.3148 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0643 0.4373 -0.0116 33 1 3.7309 4.3269 1.4975 34 1 4.6309 5.8352 1.1932 35 1 5.1443 3.8240 3.4330 36 1 4.4883 5.4696 3.6125 37 1 6.6018 6.3996 2.6844 38 1 6.9006 5.4358 4.1505 39 1 8.7104 5.7065 4.4556 40 1 9.3488 4.0519 4.3037 41 1 10.4028 5.4463 3.9685 42 1 9.6334 3.2347 1.5170 43 1 12.1884 2.0075 -0.2419 44 1 7.7121 3.7448 0.3039 45 1 7.2250 5.4558 0.4155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319805832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -8.670419 kcal Electronic energy + Delta-G solvation = -27463.274106 eV Core-core repulsion = 23608.741214 eV Total energy + Delta-G solvation = -3854.532892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57902 -40.08289 -37.94814 -36.65243 -35.53132 -33.07649 -31.83863 -31.65403 -29.92123 -28.52888 -28.10191 -25.99630 -24.87397 -23.66030 -23.06851 -21.79331 -20.76563 -19.61509 -19.28083 -18.53518 -17.92404 -17.09130 -16.69523 -16.38017 -16.07788 -15.27130 -14.99824 -14.89543 -14.59747 -14.16234 -14.03447 -13.74026 -13.71409 -13.40506 -13.12586 -12.95676 -12.77112 -12.39385 -12.34422 -12.08061 -11.69627 -11.51692 -11.39521 -11.23207 -11.03773 -10.95376 -10.86066 -10.71566 -10.64429 -10.30152 -10.22728 -10.11720 -9.89730 -9.77500 -9.54719 -8.88917 -8.60722 -8.57503 -6.91621 -5.70600 -3.00132 -0.03722 0.79765 1.24178 2.00453 2.49040 2.89632 3.07861 3.46792 3.51662 3.53972 4.16007 4.52530 4.60590 4.67743 4.79864 4.83715 4.89147 4.95648 5.00166 5.17480 5.19884 5.29522 5.34818 5.42165 5.60567 5.64134 5.74198 5.77344 5.79620 5.87694 5.97495 6.08034 6.16987 6.19807 6.38140 6.43290 6.45095 6.63838 6.69631 6.70340 6.90574 7.09550 7.29417 7.74463 8.00055 8.46900 9.58170 10.15324 10.49579 11.51531 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002792 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.354765 B =10026.402463 C =11058.673613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.311 3.689 4 C -0.139 4.139 5 C -0.167 4.167 6 C 0.585 3.415 7 O -0.500 6.500 8 N -0.597 5.597 9 C 0.092 3.908 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.104 4.104 13 H 0.072 0.928 14 C 0.181 3.819 15 H 0.048 0.952 16 C -0.165 4.165 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.124 3.876 27 S 0.291 5.709 28 N -0.524 5.524 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.111 0.889 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.258 2.094 4.348 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.098 3.902 4 C -0.176 4.176 5 C -0.298 4.298 6 C 0.369 3.631 7 O -0.374 6.374 8 N -0.330 5.330 9 C -0.033 4.033 10 C -0.170 4.170 11 C -0.154 4.154 12 C -0.124 4.124 13 H 0.090 0.910 14 C 0.070 3.930 15 H 0.066 0.934 16 C -0.225 4.225 17 N -0.366 5.366 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.735 3.265 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.003 3.997 27 S 0.440 5.560 28 N -0.365 5.365 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.129 0.871 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.042 3.191 3.859 25.538 hybrid contribution 1.521 -1.407 -0.335 2.098 sum -23.521 1.784 3.524 23.851 Atomic orbital electron populations 1.22985 0.76671 1.03667 1.02551 1.86323 1.23024 1.22585 1.88075 1.19881 0.89715 0.85270 0.95356 1.20745 0.92475 0.98452 1.05880 1.26096 0.99705 0.97702 1.06326 1.16762 0.84543 0.80638 0.81153 1.90951 1.51598 1.54731 1.40151 1.48070 1.09970 1.31114 1.43871 1.22175 0.91687 0.97132 0.92288 1.21900 0.97854 1.02244 0.94977 1.21648 0.93427 0.99126 1.01159 1.21785 0.96155 1.00125 0.94342 0.91005 1.20169 0.86953 0.94592 0.91277 0.93407 1.22483 1.00828 1.00417 0.98758 1.42456 1.20177 1.10534 1.63431 1.19180 0.95621 0.95078 1.27172 0.91279 1.24734 0.98903 0.95842 1.01319 1.69665 1.37579 1.04902 1.45519 0.86245 0.84108 0.77872 0.78271 1.21866 1.21837 1.20831 1.21837 0.78085 1.02096 0.97662 1.85022 0.89343 1.12052 1.69537 1.76404 1.27113 1.01406 1.31569 0.92092 0.92111 0.87950 0.80539 0.90271 0.90345 0.91435 0.90610 0.91644 0.90940 0.94264 0.93602 0.92847 0.78189 0.93513 0.87109 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.43 101.05 1.05 1.31 16 2 O -0.29 -3.09 10.51 -19.62 -0.21 -3.30 16 3 C 0.31 3.60 7.36 -18.42 -0.14 3.46 16 4 C -0.14 -1.68 10.26 -39.90 -0.41 -2.09 16 5 C -0.17 -2.11 5.82 -36.05 -0.21 -2.32 16 6 C 0.59 9.12 7.64 -12.66 -0.10 9.02 16 7 O -0.50 -10.03 16.53 5.25 0.09 -9.94 16 8 N -0.60 -8.28 2.97 -174.17 -0.52 -8.79 16 9 C 0.09 0.92 5.99 -3.71 -0.02 0.89 16 10 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 11 C -0.12 -1.31 4.85 -26.69 -0.13 -1.44 16 12 C -0.10 -1.59 1.97 -90.51 -0.18 -1.76 16 13 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.18 3.35 2.47 -67.93 -0.17 3.18 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 C -0.16 -2.81 9.14 37.16 0.34 -2.47 16 17 N -0.72 -17.56 4.52 -53.42 -0.24 -17.80 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 22 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 C 0.12 2.02 5.46 -3.73 -0.02 2.00 16 27 S 0.29 2.98 20.79 -107.50 -2.24 0.75 16 28 N -0.52 -5.98 11.03 29.19 0.32 -5.66 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.08 0.72 3.87 -29.52 -0.11 0.60 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 39 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.38 10.15 7.62 -40.82 -0.31 9.84 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.11 2.30 6.54 -51.93 -0.34 1.96 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -32.68 375.79 -8.28 -40.96 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.46 Total: 6.93 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.38 Total: 1.30 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.29 Total: -59.85 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.12 Total: -13.24 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.24 Total: 0.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.68 -8.28 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319805832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.286 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds