Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99894 * 2 1 4 4 C 1.37568 * 120.82626 * 180.25079 * 3 2 1 5 5 C 1.38035 * 114.25113 * 180.18631 * 4 3 2 6 6 C 1.47109 * 127.76271 * 179.86858 * 5 4 3 7 7 O 1.21638 * 119.99872 * 25.08665 * 6 5 4 8 8 N 1.34777 * 120.00200 * 204.81290 * 6 5 4 9 9 C 1.46925 * 120.63099 * 6.70438 * 8 6 5 10 10 C 1.53193 * 108.77655 * 126.36531 * 9 8 6 11 11 C 1.53047 * 109.31002 * 54.63774 * 10 9 8 12 12 C 1.53035 * 109.53589 * 298.63515 * 11 10 9 13 13 H 1.09003 * 109.50094 * 301.37890 * 12 11 10 14 14 C 1.53002 * 109.49828 * 181.31794 * 12 11 10 15 15 H 1.09002 * 109.47351 * 59.99312 * 14 12 11 16 16 C 1.53005 * 109.46948 * 299.99792 * 14 12 11 17 17 N 1.46494 * 109.47360 * 179.97438 * 14 12 11 18 18 C 1.36942 * 119.99994 * 204.99363 * 17 14 12 19 19 H 1.07996 * 119.99811 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99906 * 179.97438 * 18 17 14 21 21 N 1.31623 * 120.00110 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47240 * 60.00054 * 22 20 18 24 24 H 1.48501 * 109.47176 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47007 * 300.00205 * 22 20 18 26 26 C 1.46927 * 120.63096 * 186.42575 * 8 6 5 27 27 S 1.77232 * 104.47818 * 359.60876 * 5 4 3 28 28 N 1.30358 * 120.82306 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46653 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47056 * 299.99600 * 1 2 3 31 31 H 1.09004 * 109.46985 * 59.99806 * 1 2 3 32 32 H 1.08007 * 122.87393 * 0.06099 * 4 3 2 33 33 H 1.08993 * 109.58505 * 246.15611 * 9 8 6 34 34 H 1.09004 * 109.58552 * 6.58339 * 9 8 6 35 35 H 1.08999 * 109.49570 * 174.58222 * 10 9 8 36 36 H 1.09000 * 109.49925 * 294.65714 * 10 9 8 37 37 H 1.09002 * 109.45657 * 58.65311 * 11 10 9 38 38 H 1.08994 * 109.45905 * 178.62399 * 11 10 9 39 39 H 1.09008 * 109.46924 * 59.99992 * 16 14 12 40 40 H 1.09003 * 109.47199 * 179.97438 * 16 14 12 41 41 H 1.09001 * 109.47191 * 300.00119 * 16 14 12 42 42 H 0.96999 * 120.00071 * 25.00720 * 17 14 12 43 43 H 0.97001 * 120.00054 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.58641 * 353.41658 * 26 8 6 45 45 H 1.08999 * 109.58884 * 113.84256 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4189 1.3034 -0.0052 5 6 3.9006 2.5969 -0.0004 6 6 5.3049 3.0354 -0.0012 7 8 6.1688 2.3079 -0.4528 8 7 5.6334 4.2453 0.4933 9 6 4.6274 5.0764 1.1685 10 6 5.1603 5.4714 2.5494 11 6 6.5267 6.1425 2.3915 12 6 7.5108 5.1568 1.7578 13 1 7.5910 4.2688 2.3848 14 6 8.8849 5.8176 1.6305 15 1 9.2435 6.1037 2.6193 16 6 8.7721 7.0630 0.7488 17 7 9.8267 4.8733 1.0244 18 6 11.1699 5.0003 1.2588 19 1 11.5349 5.7964 1.8908 20 6 12.0623 4.1052 0.6849 21 7 11.6174 3.1347 -0.0850 22 14 13.8945 4.2780 1.0051 23 1 14.1555 4.1603 2.4622 24 1 14.6265 3.2069 0.2825 25 1 14.3580 5.6046 0.5247 26 6 7.0059 4.7557 0.3729 27 16 2.4471 3.6110 -0.0008 28 7 1.3521 2.3149 -0.0005 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0644 0.4374 -0.0104 33 1 4.4393 5.9736 0.5790 34 1 3.7025 4.5107 1.2820 35 1 4.4662 6.1663 3.0220 36 1 5.2616 4.5803 3.1688 37 1 6.4286 7.0197 1.7518 38 1 6.8971 6.4466 3.3704 39 1 8.0715 7.7655 1.2003 40 1 9.7510 7.5341 0.6585 41 1 8.4135 6.7769 -0.2399 42 1 9.4989 4.1582 0.4569 43 1 12.2410 2.5094 -0.4864 44 1 7.6500 3.9785 -0.0384 45 1 7.0158 5.6263 -0.2829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319805833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -29.441914 kcal Electronic energy + Delta-G solvation = -27484.534655 eV Core-core repulsion = 23629.101043 eV Total energy + Delta-G solvation = -3855.433612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62522 -41.09941 -39.29781 -37.52109 -37.01513 -34.74539 -33.27516 -32.63668 -31.39463 -29.60169 -28.96604 -27.21045 -26.31627 -25.19214 -24.66637 -22.79999 -22.20262 -20.53261 -20.07757 -19.61921 -19.12014 -18.74345 -17.56054 -17.25768 -17.24348 -16.71528 -16.36156 -16.03348 -15.77025 -15.52367 -15.35290 -15.17439 -14.81029 -14.62145 -14.32864 -14.06775 -14.04170 -13.88053 -13.37627 -13.02955 -12.97263 -12.79648 -12.65489 -12.60070 -12.47780 -12.23438 -12.11854 -11.96464 -11.80882 -11.77008 -11.69863 -11.47450 -11.21663 -11.10560 -10.92139 -10.88770 -9.75367 -9.37730 -8.97481 -7.89796 -5.18754 -1.06002 -0.07482 0.39040 1.04128 1.46434 1.48967 1.50323 1.55986 1.80916 2.19258 2.58231 3.17836 3.42845 3.60840 3.73167 3.83938 3.92792 4.02669 4.04892 4.17585 4.24127 4.29782 4.35773 4.38666 4.49988 4.52322 4.65282 4.70962 4.71568 4.80831 4.84514 4.91458 4.97440 5.12085 5.13223 5.17526 5.28076 5.35661 5.41561 5.49281 5.57361 5.73146 5.93655 6.13943 6.31553 6.81517 7.36762 8.16278 8.36360 9.33381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.002718 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.696468 B =10300.927554 C =11488.563810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.306 3.694 4 C -0.136 4.136 5 C -0.194 4.194 6 C 0.582 3.418 7 O -0.561 6.561 8 N -0.593 5.593 9 C 0.085 3.915 10 C -0.126 4.126 11 C -0.109 4.109 12 C -0.093 4.093 13 H 0.045 0.955 14 C 0.172 3.828 15 H 0.047 0.953 16 C -0.158 4.158 17 N -0.742 5.742 18 C -0.235 4.235 19 H 0.078 0.922 20 C -0.082 4.082 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.300 1.300 25 H -0.276 1.276 26 C 0.124 3.876 27 S 0.364 5.636 28 N -0.536 5.536 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.173 0.827 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.054 0.946 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.516 4.993 4.071 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C 0.093 3.907 4 C -0.174 4.174 5 C -0.326 4.326 6 C 0.368 3.632 7 O -0.440 6.440 8 N -0.325 5.325 9 C -0.038 4.038 10 C -0.164 4.164 11 C -0.146 4.146 12 C -0.113 4.113 13 H 0.064 0.936 14 C 0.064 3.936 15 H 0.065 0.935 16 C -0.218 4.218 17 N -0.382 5.382 18 C -0.367 4.367 19 H 0.096 0.904 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.801 3.199 23 H -0.204 1.204 24 H -0.227 1.227 25 H -0.202 1.202 26 C 0.003 3.997 27 S 0.515 5.485 28 N -0.378 5.378 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.190 0.810 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.203 0.797 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.314 6.003 3.898 29.205 hybrid contribution 2.271 -2.331 -0.399 3.279 sum -26.043 3.671 3.500 26.532 Atomic orbital electron populations 1.23247 0.74905 1.05538 1.02649 1.86320 1.24809 1.22256 1.87926 1.19747 0.89389 0.85733 0.95853 1.20853 0.93038 0.98629 1.04919 1.25767 0.99097 0.98880 1.08810 1.17141 0.85719 0.81737 0.78636 1.90913 1.50277 1.54421 1.48383 1.48083 1.12099 1.16514 1.55775 1.22584 0.89913 0.96112 0.95191 1.21915 0.97565 1.01754 0.95146 1.21637 0.93411 0.97676 1.01925 1.21554 0.95402 0.99037 0.95348 0.93593 1.20475 0.87929 0.89771 0.95450 0.93453 1.22413 1.00861 0.98399 1.00098 1.42796 1.02798 1.34153 1.58491 1.19609 0.84518 1.09516 1.23017 0.90405 1.25583 1.02320 0.98335 1.01123 1.69857 1.34586 1.19610 1.38332 0.85237 0.80433 0.76788 0.77473 1.20414 1.22692 1.20232 1.21596 0.80621 0.99206 0.98322 1.84695 0.86445 1.09769 1.67622 1.76300 1.28426 1.02207 1.30823 0.85309 0.91827 0.92066 0.81001 0.87148 0.89249 0.86351 0.92548 0.89101 0.90240 0.89710 0.94904 0.93635 0.79725 0.94330 0.92747 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.43 113.37 1.18 1.57 16 2 O -0.31 -6.19 10.52 -93.27 -0.98 -7.18 16 3 C 0.31 6.78 7.36 84.75 0.62 7.41 16 4 C -0.14 -3.34 10.18 22.06 0.22 -3.11 16 5 C -0.19 -4.81 6.10 24.55 0.15 -4.66 16 6 C 0.58 18.57 7.65 86.57 0.66 19.23 16 7 O -0.56 -24.05 16.45 -4.15 -0.07 -24.12 16 8 N -0.59 -15.92 2.98 -823.97 -2.45 -18.37 16 9 C 0.09 1.38 5.66 86.36 0.49 1.87 16 10 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 11 C -0.11 -2.06 4.78 30.62 0.15 -1.92 16 12 C -0.09 -2.85 2.32 -10.86 -0.03 -2.87 16 13 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 14 C 0.17 6.41 2.72 44.99 0.12 6.53 16 15 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 16 C -0.16 -5.00 8.79 71.98 0.63 -4.37 16 17 N -0.74 -37.79 5.04 -322.94 -1.63 -39.42 16 18 C -0.23 -13.20 9.93 84.03 0.83 -12.36 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 21 N -0.97 -62.59 13.06 21.65 0.28 -62.31 16 22 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 C 0.12 4.02 5.21 86.22 0.45 4.47 16 27 S 0.36 6.35 20.18 -56.49 -1.14 5.21 16 28 N -0.54 -11.10 11.03 -175.21 -1.93 -13.03 16 29 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 32 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.28 3.78 -19.55 -0.07 1.21 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.40 6.50 -2.39 -0.02 1.39 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.92 6.46 -2.38 -0.02 1.90 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 1.46 6.32 -2.39 -0.02 1.45 16 42 H 0.37 20.94 6.17 -92.71 -0.57 20.37 16 43 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.05 2.36 5.58 -2.39 -0.01 2.35 16 45 H 0.09 2.65 6.16 -2.39 -0.01 2.64 16 Total: -1.00 -77.49 369.32 0.64 -76.85 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.39 Total: 27.11 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.15 Total: 5.74 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -5.73 Total: -133.13 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.05 Total: -31.29 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.14 Total: 5.21 kcal Total: -77.49 0.64 -76.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319805833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.407 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds