Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35959 * 116.99879 * 2 1 4 4 C 1.37573 * 120.82275 * 180.25842 * 3 2 1 5 5 C 1.38042 * 114.24553 * 180.22838 * 4 3 2 6 6 C 1.47118 * 127.75494 * 179.86348 * 5 4 3 7 7 O 1.21630 * 120.00239 * 334.23096 * 6 5 4 8 8 N 1.34782 * 119.99425 * 154.23720 * 6 5 4 9 9 C 1.46924 * 120.63474 * 353.55116 * 8 6 5 10 10 C 1.53190 * 108.77774 * 233.63559 * 9 8 6 11 11 C 1.53035 * 109.31517 * 305.36731 * 10 9 8 12 12 C 1.53042 * 109.54010 * 61.36146 * 11 10 9 13 13 H 1.08997 * 109.49305 * 58.62191 * 12 11 10 14 14 C 1.53005 * 109.49886 * 178.68602 * 12 11 10 15 15 H 1.08995 * 109.46457 * 60.00337 * 14 12 11 16 16 C 1.53000 * 109.46930 * 300.00342 * 14 12 11 17 17 N 1.46504 * 109.46779 * 180.02562 * 14 12 11 18 18 C 1.36935 * 119.99445 * 204.99672 * 17 14 12 19 19 H 1.07998 * 120.00072 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99530 * 180.02562 * 18 17 14 21 21 N 1.31623 * 119.99490 * 180.02562 * 20 18 17 22 22 Si 1.86790 * 120.00328 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47198 * 89.99823 * 22 20 18 24 24 H 1.48506 * 109.47435 * 209.99922 * 22 20 18 25 25 H 1.48504 * 109.47072 * 329.99978 * 22 20 18 26 26 C 1.46927 * 120.62644 * 173.58550 * 8 6 5 27 27 S 1.77232 * 104.48285 * 359.60486 * 5 4 3 28 28 N 1.30354 * 120.82895 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.47622 * 60.00026 * 1 2 3 30 30 H 1.09005 * 109.47360 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47286 * 299.99710 * 1 2 3 32 32 H 1.07999 * 122.87972 * 0.07657 * 4 3 2 33 33 H 1.08994 * 109.58577 * 113.84760 * 9 8 6 34 34 H 1.09008 * 109.70170 * 353.49377 * 9 8 6 35 35 H 1.09003 * 109.49623 * 185.40946 * 10 9 8 36 36 H 1.08999 * 109.49739 * 65.31746 * 10 9 8 37 37 H 1.09008 * 109.45875 * 301.34373 * 11 10 9 38 38 H 1.08991 * 109.46204 * 181.38792 * 11 10 9 39 39 H 1.08996 * 109.47445 * 59.99523 * 16 14 12 40 40 H 1.09000 * 109.47127 * 180.02562 * 16 14 12 41 41 H 1.09003 * 109.46990 * 299.99931 * 16 14 12 42 42 H 0.96991 * 119.99970 * 25.00206 * 17 14 12 43 43 H 0.97002 * 119.99661 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.58536 * 6.57111 * 26 8 6 45 45 H 1.09004 * 109.58166 * 246.15149 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4189 1.3032 -0.0053 5 6 3.9006 2.5968 0.0004 6 6 5.3049 3.0351 -0.0002 7 8 6.1690 2.3084 0.4522 8 7 5.6339 4.2420 -0.5020 9 6 4.6272 5.0713 -1.1783 10 6 5.1564 5.4584 -2.5628 11 6 6.5243 6.1279 -2.4128 12 6 7.5089 5.1437 -1.7771 13 1 7.5855 4.2524 -2.3998 14 6 8.8845 5.8028 -1.6576 15 1 8.8076 6.6933 -1.0338 16 6 9.3840 6.1964 -3.0492 17 7 9.8266 4.8599 -1.0496 18 6 10.9257 5.3267 -0.3793 19 1 11.0978 6.3898 -0.2985 20 6 11.8187 4.4333 0.1964 21 7 12.8749 4.8819 0.8411 22 14 11.5214 2.5945 0.0561 23 1 12.1808 2.0786 -1.1704 24 1 12.0857 1.9095 1.2468 25 1 10.0615 2.3335 -0.0196 26 6 7.0064 4.7530 -0.3837 27 16 2.4471 3.6110 0.0009 28 7 1.3521 2.3148 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0643 0.4373 -0.0109 33 1 4.4425 5.9719 -0.5928 34 1 3.6996 4.5088 -1.2857 35 1 4.4619 6.1519 -3.0369 36 1 5.2547 4.5639 -3.1778 37 1 6.4299 7.0085 -1.7773 38 1 6.8921 6.4265 -3.3943 39 1 8.6832 6.8976 -3.5020 40 1 10.3642 6.6656 -2.9641 41 1 9.4608 5.3057 -3.6729 42 1 9.6719 3.9052 -1.1219 43 1 13.4991 4.2576 1.2430 44 1 7.6500 3.9783 0.0331 45 1 7.0157 5.6277 0.2667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319805834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -4.296600 kcal Electronic energy + Delta-G solvation = -27556.789308 eV Core-core repulsion = 23702.446079 eV Total energy + Delta-G solvation = -3854.343229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65592 -40.20335 -38.08727 -36.71436 -35.72342 -33.16773 -31.93866 -31.72740 -30.25514 -28.83066 -28.28512 -26.13249 -24.96350 -23.60432 -23.02797 -21.82701 -20.75394 -19.83542 -19.40389 -18.64980 -18.01490 -17.50015 -16.71123 -16.44715 -16.19821 -15.47383 -15.07091 -14.91987 -14.75479 -14.29861 -14.10882 -13.91342 -13.75783 -13.39666 -13.11221 -13.01920 -12.96606 -12.45916 -12.43250 -12.30980 -11.79324 -11.67662 -11.54365 -11.37137 -11.20404 -11.02851 -10.96006 -10.78865 -10.69459 -10.38265 -10.24925 -10.11121 -10.00730 -9.85242 -9.52985 -8.92895 -8.72350 -8.64298 -7.23926 -5.73180 -3.08816 -0.16935 0.75779 1.17974 1.90861 2.43448 2.81075 2.97911 3.44927 3.51935 3.54057 4.06023 4.43521 4.55089 4.65236 4.72364 4.75913 4.80535 4.84324 4.90188 5.04635 5.14132 5.15216 5.22981 5.33847 5.49646 5.51356 5.59341 5.63568 5.73455 5.75879 5.84084 5.97445 6.00589 6.09978 6.22899 6.30441 6.33110 6.47691 6.51736 6.64100 6.80615 6.99738 7.15795 7.86815 8.02273 8.45848 9.24325 9.97406 10.16389 11.44985 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003094 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.813197 B = 9046.249339 C =10374.065472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.309 3.691 4 C -0.132 4.132 5 C -0.175 4.175 6 C 0.587 3.413 7 O -0.505 6.505 8 N -0.600 5.600 9 C 0.092 3.908 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.108 4.108 13 H 0.071 0.929 14 C 0.186 3.814 15 H 0.057 0.943 16 C -0.165 4.165 17 N -0.749 5.749 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.007 3.993 21 N -0.934 5.934 22 Si 0.878 3.122 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.271 1.271 26 C 0.122 3.878 27 S 0.299 5.701 28 N -0.527 5.527 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.178 0.822 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.105 0.895 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.462 -1.935 -6.171 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.095 3.905 4 C -0.169 4.169 5 C -0.307 4.307 6 C 0.372 3.628 7 O -0.380 6.380 8 N -0.333 5.333 9 C -0.033 4.033 10 C -0.169 4.169 11 C -0.153 4.153 12 C -0.128 4.128 13 H 0.090 0.910 14 C 0.076 3.924 15 H 0.075 0.925 16 C -0.225 4.225 17 N -0.392 5.392 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.582 5.582 22 Si 0.708 3.292 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.197 1.197 26 C 0.001 3.999 27 S 0.449 5.551 28 N -0.367 5.367 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.195 0.805 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.203 -0.881 -5.766 28.800 hybrid contribution 0.593 -2.767 -0.086 2.831 sum -27.610 -3.648 -5.852 28.458 Atomic orbital electron populations 1.22985 0.76632 1.03672 1.02567 1.86319 1.23058 1.22636 1.88102 1.19870 0.89700 0.85311 0.95595 1.20785 0.92497 0.98575 1.05025 1.26082 0.99521 0.97675 1.07421 1.16745 0.84989 0.81791 0.79305 1.90920 1.48410 1.52765 1.45933 1.48047 1.12312 1.16898 1.56008 1.22203 0.90769 0.95696 0.94638 1.21893 0.97998 1.01428 0.95543 1.21639 0.93605 0.98230 1.01848 1.21835 0.96078 0.99167 0.95716 0.91035 1.20145 0.86300 0.92921 0.93065 0.92501 1.22451 1.01190 1.00231 0.98644 1.42834 1.27010 1.03658 1.65716 1.19023 0.98103 0.94191 1.25841 0.89225 1.24642 0.96985 0.97265 1.00029 1.69702 1.14227 1.33497 1.40788 0.86637 0.78066 0.87231 0.77254 1.21261 1.21787 1.19722 1.21854 0.79595 1.00783 0.97667 1.85074 0.89214 1.11656 1.69178 1.76383 1.27775 1.01735 1.30854 0.92089 0.87947 0.92094 0.80514 0.90119 0.90226 0.90346 0.91390 0.91376 0.90721 0.93908 0.92327 0.93691 0.80561 0.93118 0.87665 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.43 101.05 1.05 1.30 16 2 O -0.30 -2.98 10.51 -19.61 -0.21 -3.18 16 3 C 0.31 3.41 7.36 -18.42 -0.14 3.28 16 4 C -0.13 -1.51 10.18 -39.90 -0.41 -1.92 16 5 C -0.18 -2.10 6.10 -36.05 -0.22 -2.32 16 6 C 0.59 8.66 7.65 -12.65 -0.10 8.56 16 7 O -0.51 -9.59 16.45 5.25 0.09 -9.51 16 8 N -0.60 -7.80 2.97 -174.15 -0.52 -8.31 16 9 C 0.09 0.84 5.66 -3.71 -0.02 0.82 16 10 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 11 C -0.12 -1.20 4.85 -26.69 -0.13 -1.33 16 12 C -0.11 -1.54 1.97 -90.50 -0.18 -1.72 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.19 3.27 2.48 -67.93 -0.17 3.11 16 15 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 16 C -0.17 -2.68 9.14 37.16 0.34 -2.34 16 17 N -0.75 -17.11 4.33 -53.42 -0.23 -17.34 16 18 C -0.24 -6.67 10.41 -15.06 -0.16 -6.82 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 22 Si 0.88 22.74 27.74 -169.99 -4.71 18.02 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 25 H -0.27 -6.81 6.52 56.52 0.37 -6.44 16 26 C 0.12 1.86 5.48 -3.71 -0.02 1.84 16 27 S 0.30 2.86 20.19 -107.50 -2.17 0.69 16 28 N -0.53 -5.77 11.03 29.19 0.32 -5.44 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.66 3.77 -24.92 -0.09 0.57 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 39 H 0.04 0.56 6.40 -51.93 -0.33 0.22 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.36 8.42 5.48 -40.82 -0.22 8.19 16 43 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 44 H 0.11 2.03 6.51 -51.93 -0.34 1.69 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -33.80 371.78 -7.85 -41.65 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.40 Total: 5.19 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.40 Total: 1.29 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.35 Total: -59.77 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.12 Total: -12.69 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.02 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.17 Total: 0.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.80 -7.85 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319805834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.356 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds