Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99958 * 2 1 4 4 C 1.38923 * 119.68121 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11041 * 179.74645 * 4 3 2 6 6 C 1.50700 * 120.75872 * 180.23487 * 5 4 3 7 7 N 1.46896 * 109.47244 * 90.00278 * 6 5 4 8 8 C 1.46896 * 111.00153 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47333 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.46635 * 65.00032 * 9 8 7 11 11 C 1.52996 * 109.47057 * 185.00200 * 9 8 7 12 12 N 1.46497 * 109.46986 * 305.00031 * 9 8 7 13 13 C 1.34782 * 120.00149 * 154.99800 * 12 9 8 14 14 O 1.21288 * 119.99582 * 0.02562 * 13 12 9 15 15 C 1.50696 * 120.00056 * 180.02562 * 13 12 9 16 16 S 1.81001 * 109.46623 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99871 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99956 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00369 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00099 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99751 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47160 * 90.00090 * 21 19 17 23 23 H 1.48502 * 109.46986 * 210.00463 * 21 19 17 24 24 H 1.48496 * 109.47120 * 329.99789 * 21 19 17 25 25 C 1.38830 * 118.48762 * 0.25931 * 5 4 3 26 26 C 1.38049 * 119.28862 * 359.97438 * 25 5 4 27 27 N 1.31972 * 120.83284 * 0.02714 * 26 25 5 28 28 H 1.09001 * 109.47025 * 300.00278 * 1 2 3 29 29 H 1.09004 * 109.47033 * 59.99481 * 1 2 3 30 30 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.44820 * 0.03209 * 4 3 2 32 32 H 1.09010 * 109.47311 * 210.00374 * 6 5 4 33 33 H 1.08995 * 109.47313 * 330.00007 * 6 5 4 34 34 H 1.00894 * 111.00146 * 303.95638 * 7 6 5 35 35 H 1.09003 * 109.47637 * 299.99876 * 8 7 6 36 36 H 1.09001 * 109.47360 * 59.99801 * 8 7 6 37 37 H 1.08999 * 109.47536 * 60.00383 * 11 9 8 38 38 H 1.09004 * 109.47282 * 180.02562 * 11 9 8 39 39 H 1.08996 * 109.47294 * 299.99533 * 11 9 8 40 40 H 0.97001 * 120.00323 * 334.99876 * 12 9 8 41 41 H 1.08995 * 109.47458 * 299.99872 * 15 13 12 42 42 H 1.08994 * 109.47240 * 60.00292 * 15 13 12 43 43 H 0.97005 * 119.99352 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.35803 * 180.02562 * 25 5 4 45 45 H 1.07993 * 119.58638 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5130 -0.0048 6 6 5.5512 2.6268 -0.0097 7 7 6.0353 2.6599 -1.3963 8 6 7.4994 2.7713 -1.4403 9 6 7.9650 2.8022 -2.8974 10 1 7.5924 3.7064 -3.3787 11 6 9.4942 2.7924 -2.9445 12 7 7.4472 1.6259 -3.6005 13 6 7.2775 1.6602 -4.9372 14 8 7.5538 2.6650 -5.5579 15 6 6.7443 0.4504 -5.6604 16 16 6.6306 0.8077 -7.4311 17 6 5.9995 -0.7308 -8.0137 18 1 5.8064 -1.5337 -7.3176 19 6 5.7507 -0.9111 -9.3672 20 7 5.2787 -2.0603 -9.8023 21 14 6.0855 0.4772 -10.5714 22 1 7.4811 0.3757 -11.0683 23 1 5.1441 0.3778 -11.7156 24 1 5.8971 1.7818 -9.8875 25 6 3.2506 3.6491 -0.0050 26 6 1.8772 3.5097 -0.0005 27 7 1.3186 2.3140 0.0046 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3694 0.0004 32 1 5.8480 3.5431 0.5007 33 1 5.9823 1.7682 0.5051 34 1 5.7183 1.8511 -1.9094 35 1 7.8093 3.6888 -0.9399 36 1 7.9443 1.9140 -0.9352 37 1 9.8668 1.8881 -2.4632 38 1 9.8260 2.8148 -3.9825 39 1 9.8794 3.6676 -2.4214 40 1 7.2266 0.8222 -3.1042 41 1 7.4163 -0.3930 -5.5019 42 1 5.7548 0.2039 -5.2756 43 1 5.1045 -2.1861 -10.7483 44 1 3.6995 4.6314 -0.0096 45 1 1.2519 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321463562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -39.982095 kcal Electronic energy + Delta-G solvation = -25995.058134 eV Core-core repulsion = 22139.167466 eV Total energy + Delta-G solvation = -3855.890668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92373 -39.59168 -38.37809 -37.13773 -35.00214 -32.68418 -32.42448 -31.33115 -30.98468 -28.68404 -27.84716 -26.93379 -25.60080 -24.40769 -23.63999 -21.96644 -21.56031 -20.38662 -18.32290 -17.85583 -17.47245 -16.65926 -16.33843 -16.27346 -16.15261 -15.68327 -15.44024 -15.00239 -14.91502 -14.81258 -14.43230 -14.02752 -13.77320 -13.61136 -13.35895 -13.13663 -12.84047 -12.78365 -12.60005 -12.39864 -12.26242 -12.09381 -11.90181 -11.73719 -11.45783 -11.25170 -11.11440 -10.99760 -10.58134 -10.06569 -9.95544 -9.84405 -9.48842 -9.03683 -8.97822 -8.83996 -8.78459 -8.48574 -6.90076 -6.27797 -3.99238 0.82407 0.95233 2.77477 2.80875 2.99831 3.30102 3.34511 3.40465 3.51865 3.66022 3.86451 4.03589 4.27160 4.34366 4.53102 4.62904 4.76197 4.79605 4.82060 4.90455 5.01983 5.05735 5.06426 5.10207 5.11395 5.19129 5.29754 5.33684 5.35242 5.37539 5.42140 5.57077 5.58856 5.77639 5.97037 5.99140 6.02231 6.07789 6.10574 6.50739 6.58819 6.91492 6.95802 7.56295 7.59454 7.95313 8.42743 8.51514 9.18522 10.81485 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008890 B = 0.002710 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.743986 B =10331.418214 C =12676.750133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.321 3.679 4 C -0.185 4.185 5 C -0.006 4.006 6 C 0.098 3.902 7 N -0.682 5.682 8 C 0.053 3.947 9 C 0.145 3.855 10 H 0.097 0.903 11 C -0.163 4.163 12 N -0.733 5.733 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.188 4.188 26 C 0.138 3.862 27 N -0.541 5.541 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.348 0.652 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.394 0.606 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.139 0.861 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 9.092 26.783 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.142 3.858 4 C -0.207 4.207 5 C -0.015 4.015 6 C -0.031 4.031 7 N -0.315 5.315 8 C -0.076 4.076 9 C 0.040 3.960 10 H 0.115 0.885 11 C -0.222 4.222 12 N -0.388 5.388 13 C 0.320 3.680 14 O -0.390 6.390 15 C -0.276 4.276 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.209 4.209 26 C -0.017 4.017 27 N -0.265 5.265 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.167 0.833 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.227 0.773 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.157 0.843 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.134 10.985 25.525 27.870 hybrid contribution 0.452 -2.013 0.508 2.125 sum -1.682 8.972 26.033 27.587 Atomic orbital electron populations 1.22869 0.77051 1.03067 1.02459 1.86246 1.23071 1.24491 1.87712 1.19790 0.89267 0.84784 0.91933 1.20942 0.92181 0.98995 1.08537 1.19946 0.95865 0.92049 0.93595 1.20895 0.89391 1.02142 0.90628 1.60389 1.10369 1.48660 1.12037 1.22312 0.87240 1.01861 0.96200 1.20940 0.93563 0.90525 0.90986 0.88517 1.22163 0.94992 1.01759 1.03297 1.46017 1.68617 1.16450 1.07676 1.20226 0.76912 0.89278 0.81548 1.90699 1.49091 1.33176 1.66084 1.23284 1.04235 0.98558 1.01481 1.84785 1.86037 1.22978 0.97648 1.22323 1.49803 0.97959 0.96791 0.89433 1.24714 0.93350 0.95752 0.97500 1.69944 1.42739 1.23380 1.15686 0.86734 0.79188 0.84250 0.81687 1.19226 1.19948 1.15889 1.21870 0.94482 0.99552 1.04991 1.22415 0.92869 0.93616 0.92811 1.67316 1.41074 0.98899 1.19201 0.92399 0.92118 0.88545 0.84346 0.89275 0.93609 0.83292 0.89340 0.94457 0.92605 0.91373 0.91731 0.77265 0.88633 0.88549 0.91959 0.84328 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.45 10.48 -18.73 -0.20 -3.65 16 3 C 0.32 3.64 7.49 -17.12 -0.13 3.51 16 4 C -0.19 -1.79 9.75 -39.28 -0.38 -2.18 16 5 C -0.01 -0.06 5.43 -104.35 -0.57 -0.62 16 6 C 0.10 0.66 5.86 -4.98 -0.03 0.63 16 7 N -0.68 -5.66 6.48 -115.06 -0.75 -6.41 16 8 C 0.05 0.39 5.30 -3.82 -0.02 0.37 16 9 C 0.15 1.50 2.88 -67.93 -0.20 1.30 16 10 H 0.10 1.26 7.58 -51.93 -0.39 0.87 16 11 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 12 N -0.73 -8.74 4.36 -53.81 -0.23 -8.98 16 13 C 0.53 9.25 7.81 -10.99 -0.09 9.17 16 14 O -0.52 -10.96 15.53 5.55 0.09 -10.87 16 15 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 17 C -0.52 -15.11 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.76 13.97 55.49 0.78 -25.98 16 21 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 25 C -0.19 -1.54 9.81 -39.43 -0.39 -1.93 16 26 C 0.14 1.23 11.18 -17.56 -0.20 1.03 16 27 N -0.54 -5.99 9.22 -13.33 -0.12 -6.12 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.09 0.50 8.10 -51.92 -0.42 0.08 16 33 H 0.05 0.26 8.10 -51.93 -0.42 -0.16 16 34 H 0.35 3.15 7.57 -39.29 -0.30 2.85 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.39 3.64 8.15 -40.82 -0.33 3.30 16 41 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 45 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -35.70 395.68 -8.27 -43.97 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.93 Total: 3.22 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.15 Total: -2.80 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.33 Total: -47.48 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.11 Total: -14.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.70 -8.27 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321463562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.988 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds