Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47007 * 239.99792 * 2 1 3 5 5 N 1.46904 * 109.46930 * 185.00251 * 4 2 1 6 6 C 1.46897 * 110.99874 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47338 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99705 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00315 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99799 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00055 * 0.02562 * 10 9 7 12 12 C 1.38949 * 119.99411 * 179.97438 * 10 9 7 13 13 N 1.31421 * 119.99600 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00569 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47396 * 89.99549 * 14 12 10 16 16 H 1.48496 * 109.47219 * 210.00216 * 14 12 10 17 17 H 1.48506 * 109.46608 * 329.99604 * 14 12 10 18 18 N 1.46504 * 109.46741 * 120.00371 * 2 1 3 19 19 C 1.34776 * 119.99735 * 274.99417 * 18 2 1 20 20 O 1.21282 * 119.99940 * 0.02562 * 19 18 2 21 21 C 1.50698 * 120.00035 * 179.97438 * 19 18 2 22 22 C 1.53006 * 109.47184 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47184 * 180.02562 * 22 21 19 24 24 C 1.33396 * 125.19659 * 90.00002 * 23 22 21 25 25 C 1.38429 * 114.91647 * 179.97438 * 24 23 22 26 26 C 1.33391 * 114.91988 * 0.02562 * 25 24 23 27 27 S 1.75875 * 125.20698 * 269.69825 * 23 22 21 28 28 H 1.08999 * 109.47062 * 300.00155 * 1 2 3 29 29 H 1.09000 * 109.46949 * 59.99825 * 1 2 3 30 30 H 1.08999 * 109.47549 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47297 * 304.99949 * 4 2 1 32 32 H 1.08999 * 109.47342 * 65.00484 * 4 2 1 33 33 H 1.00904 * 110.99826 * 56.04785 * 5 4 2 34 34 H 1.09004 * 109.47508 * 300.00224 * 6 5 4 35 35 H 1.09003 * 109.46975 * 60.00095 * 6 5 4 36 36 H 0.97001 * 119.99573 * 359.97438 * 9 7 6 37 37 H 0.96999 * 119.99318 * 179.97438 * 13 12 10 38 38 H 0.96998 * 120.00303 * 94.99591 * 18 2 1 39 39 H 1.09001 * 109.46665 * 60.00498 * 21 19 18 40 40 H 1.08993 * 109.47304 * 300.00054 * 21 19 18 41 41 H 1.09001 * 109.46801 * 300.00442 * 22 21 19 42 42 H 1.09001 * 109.46998 * 60.00038 * 22 21 19 43 43 H 1.07999 * 122.54415 * 359.96454 * 24 23 22 44 44 H 1.07994 * 122.53889 * 180.02562 * 25 24 23 45 45 H 1.07999 * 125.19834 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8268 -1.1904 6 6 4.0303 -1.5160 -2.3760 7 6 5.5315 -1.6057 -2.2801 8 8 6.1066 -1.1406 -1.3186 9 7 6.2353 -2.2017 -3.2629 10 6 7.6012 -2.2827 -3.1757 11 1 8.1131 -1.8693 -2.3193 12 6 8.3266 -2.8976 -4.1888 13 7 9.6359 -2.9749 -4.1055 14 14 7.4411 -3.6132 -5.6698 15 1 7.3220 -2.5749 -6.7247 16 1 8.2115 -4.7682 -6.1967 17 1 6.0857 -4.0655 -5.2651 18 7 2.0183 -0.6907 1.1962 19 6 2.1470 -0.0184 2.3571 20 8 1.8583 1.1583 2.4117 21 6 2.6487 -0.7289 3.5877 22 6 2.6998 0.2541 4.7591 23 6 3.2021 -0.4563 5.9896 24 6 4.4821 -0.5553 6.3516 25 6 4.7040 -1.2566 7.5243 26 6 3.6043 -1.7276 8.1142 27 16 2.1897 -1.2753 7.1718 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6054 -1.7199 -1.2951 32 1 1.7517 -0.1584 -2.1370 33 1 3.7995 -1.2885 -0.3432 34 1 3.6094 -2.5201 -2.4294 35 1 3.7557 -0.9590 -3.2719 36 1 5.7754 -2.5732 -4.0319 37 1 10.1422 -3.4044 -4.8126 38 1 2.2489 -1.6319 1.1526 39 1 3.6478 -1.1215 3.3986 40 1 1.9758 -1.5506 3.8326 41 1 3.3725 1.0761 4.5145 42 1 1.7005 0.6464 4.9481 43 1 5.2846 -0.1213 5.7736 44 1 5.6926 -1.4107 7.9307 45 1 3.5850 -2.2953 9.0327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321739426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -44.066986 kcal Electronic energy + Delta-G solvation = -25825.174313 eV Core-core repulsion = 21969.106510 eV Total energy + Delta-G solvation = -3856.067803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06930 -38.55450 -38.15893 -36.87101 -34.37003 -33.90090 -33.73076 -31.69929 -31.29509 -28.89572 -27.80436 -25.46735 -24.97924 -23.25132 -22.88776 -21.24739 -20.49512 -19.48099 -19.41779 -18.41177 -17.74958 -16.91739 -16.44335 -16.07802 -15.81179 -15.61334 -15.39597 -14.91432 -14.55941 -14.27166 -14.06101 -13.77208 -13.40925 -13.26551 -13.19146 -12.97794 -12.84496 -12.70206 -12.36790 -12.29086 -12.27134 -12.16174 -11.95882 -11.83497 -11.68575 -11.30691 -11.20318 -11.07044 -10.92973 -10.62401 -10.00330 -9.95880 -9.60288 -9.22363 -8.89348 -8.73087 -8.63486 -8.24266 -8.19298 -6.33685 -3.85299 0.73147 1.37337 1.74317 2.49856 2.56114 2.99376 3.04380 3.04603 3.12741 3.69953 3.97458 4.07780 4.38443 4.66779 4.71325 4.76686 4.79899 4.84926 4.99352 5.04385 5.13291 5.19531 5.22529 5.33973 5.34218 5.39134 5.48206 5.52251 5.57712 5.58678 5.74169 5.82806 5.88032 5.88963 5.92332 6.02169 6.06044 6.25716 6.37713 6.98653 7.34701 7.47174 7.55299 8.11513 8.12245 8.56742 8.92138 9.39401 9.79268 10.79382 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.002124 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.452418 B =13177.346536 C =15191.086282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.047 3.953 7 C 0.448 3.552 8 O -0.564 6.564 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.881 3.119 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.724 5.724 19 C 0.520 3.480 20 O -0.540 6.540 21 C -0.138 4.138 22 C -0.032 4.032 23 C -0.170 4.170 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.218 4.218 27 S 0.088 5.912 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.349 0.651 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.398 0.602 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 0.072 16.450 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.086 4.086 7 C 0.234 3.766 8 O -0.446 6.446 9 N -0.229 5.229 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.376 5.376 19 C 0.306 3.694 20 O -0.417 6.417 21 C -0.179 4.179 22 C -0.072 4.072 23 C -0.287 4.287 24 C -0.169 4.169 25 C -0.161 4.161 26 C -0.353 4.353 27 S 0.351 5.649 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.232 0.768 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.151 1.558 16.959 27.155 hybrid contribution 0.946 -1.989 -1.289 2.551 sum -20.205 -0.430 15.670 25.573 Atomic orbital electron populations 1.22145 0.95063 1.02012 1.02765 1.21028 0.93388 0.98552 0.83148 0.88371 1.22313 0.88649 0.99001 0.98000 1.60010 1.07662 1.57435 1.04880 1.21729 0.94915 0.97082 0.94825 1.19698 0.87988 0.83892 0.85021 1.90574 1.70992 1.50111 1.32902 1.42207 1.07881 1.52859 1.19989 1.19431 0.79511 1.35978 1.08487 0.86278 1.25051 0.95455 0.97658 0.98038 1.69628 1.05070 1.43307 1.34039 0.86661 0.79498 0.79797 0.83344 1.19570 1.20179 1.19569 1.46037 1.67717 1.13926 1.09916 1.20545 0.77061 0.87265 0.84502 1.90703 1.49963 1.15925 1.85116 1.21706 1.04042 0.99517 0.92597 1.19860 1.02888 0.96500 0.87973 1.24532 0.96456 1.06197 1.01527 1.20245 0.96385 1.02290 0.97952 1.20222 0.99601 1.00036 0.96248 1.25598 0.95453 1.08910 1.05369 1.84271 1.10649 1.52254 1.17765 0.91880 0.91426 0.92598 0.94971 0.89458 0.83102 0.93753 0.89317 0.79693 0.91590 0.76836 0.88025 0.88853 0.88886 0.90032 0.83950 0.84235 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.50 2.88 -67.93 -0.20 1.30 16 3 H 0.10 1.29 7.58 -51.93 -0.39 0.90 16 4 C 0.05 0.52 5.30 -3.82 -0.02 0.50 16 5 N -0.67 -9.73 6.12 -115.05 -0.70 -10.44 16 6 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 7 C 0.45 9.97 7.82 -10.99 -0.09 9.89 16 8 O -0.56 -14.97 15.78 5.54 0.09 -14.88 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 11 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 12 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 13 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 14 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 18 N -0.72 -7.15 4.36 -53.80 -0.23 -7.38 16 19 C 0.52 5.91 7.79 -10.99 -0.09 5.83 16 20 O -0.54 -8.08 15.64 5.56 0.09 -8.00 16 21 C -0.14 -1.21 5.68 -27.88 -0.16 -1.36 16 22 C -0.03 -0.31 5.00 -27.88 -0.14 -0.44 16 23 C -0.17 -1.57 5.76 -36.00 -0.21 -1.78 16 24 C -0.14 -1.28 10.05 -41.20 -0.41 -1.69 16 25 C -0.13 -1.10 10.18 -41.21 -0.42 -1.52 16 26 C -0.22 -1.72 11.23 29.04 0.33 -1.39 16 27 S 0.09 0.73 23.33 -107.50 -2.51 -1.78 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.35 5.21 7.28 -39.29 -0.29 4.93 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.40 3.13 8.15 -40.82 -0.33 2.80 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -34.73 393.86 -9.38 -44.11 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -6.72 Total: 15.38 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.33 Total: 1.32 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.22 Total: -56.49 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.73 -9.38 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321739426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.041 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds