Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47078 * 2 1 4 4 C 1.52996 * 109.47457 * 239.99950 * 2 1 3 5 5 N 1.46500 * 109.47264 * 64.99658 * 4 2 1 6 6 C 1.46498 * 119.99887 * 90.00249 * 5 4 2 7 7 C 1.34777 * 120.00145 * 269.72621 * 5 4 2 8 8 O 1.21344 * 119.99756 * 2.65788 * 7 5 4 9 9 C 1.49444 * 119.99916 * 182.65410 * 7 5 4 10 10 O 1.21349 * 120.00462 * 354.01963 * 9 7 5 11 11 N 1.34785 * 120.00024 * 174.01423 * 9 7 5 12 12 C 1.46500 * 120.00006 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46982 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47002 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.46905 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00336 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00187 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00150 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99508 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46571 * 90.00875 * 19 17 15 21 21 H 1.48500 * 109.46791 * 210.00091 * 19 17 15 22 22 H 1.48490 * 109.47246 * 330.00763 * 19 17 15 23 23 C 1.50702 * 109.47327 * 119.99519 * 2 1 3 24 24 N 1.29019 * 124.91933 * 240.00612 * 23 2 1 25 25 C 1.31787 * 117.12662 * 179.97438 * 24 23 2 26 26 C 1.33636 * 114.49895 * 0.02562 * 25 24 23 27 27 S 1.70981 * 124.91134 * 59.69332 * 23 2 1 28 28 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47620 * 300.00260 * 1 2 3 30 30 H 1.09005 * 109.47050 * 60.00559 * 1 2 3 31 31 H 1.09002 * 109.47012 * 304.99584 * 4 2 1 32 32 H 1.08998 * 109.47490 * 185.00044 * 4 2 1 33 33 H 1.08996 * 109.47169 * 263.76664 * 6 5 4 34 34 H 1.09000 * 109.47033 * 23.76605 * 6 5 4 35 35 H 1.09000 * 109.47465 * 143.76013 * 6 5 4 36 36 H 0.96999 * 119.99878 * 0.02562 * 11 9 7 37 37 H 1.09003 * 109.46658 * 300.00021 * 12 11 9 38 38 H 1.08999 * 109.47127 * 59.99967 * 12 11 9 39 39 H 1.08997 * 109.46863 * 299.99995 * 13 12 11 40 40 H 1.08995 * 109.46854 * 59.99845 * 13 12 11 41 41 H 1.08997 * 109.47299 * 299.99717 * 14 13 12 42 42 H 1.08995 * 109.46966 * 59.99992 * 14 13 12 43 43 H 0.97007 * 120.00128 * 179.97438 * 18 17 15 44 44 H 1.07998 * 122.75156 * 180.02562 * 25 24 23 45 45 H 1.08001 * 126.03814 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 2.5427 1.0696 -2.9751 7 6 0.4794 -0.2241 -3.0532 8 8 -0.2775 -1.0503 -2.5874 9 6 0.1108 0.5059 -4.3040 10 8 0.8144 1.4073 -4.7103 11 7 -1.0031 0.1631 -4.9811 12 6 -1.3641 0.8783 -6.2076 13 6 -2.6614 0.2974 -6.7737 14 6 -3.0380 1.0440 -8.0549 15 6 -4.3162 0.4723 -8.6121 16 1 -4.8102 -0.3424 -8.1035 17 6 -4.8544 0.9885 -9.7718 18 7 -5.9695 0.4892 -10.2583 19 14 -3.9995 2.3971 -10.6519 20 1 -3.0330 1.8507 -11.6381 21 1 -5.0099 3.2265 -11.3565 22 1 -3.2761 3.2336 -9.6610 23 6 2.0323 -0.7103 1.2305 24 7 2.7771 -0.1767 2.1389 25 6 3.1278 -0.9409 3.1537 26 6 2.6526 -2.1887 3.0979 27 16 1.6915 -2.3378 1.6286 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6055 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 2.2335 2.0445 -2.5983 34 1 3.5660 0.8659 -2.6596 35 1 2.4912 1.0678 -4.0639 36 1 -1.5657 -0.5572 -4.6563 37 1 -1.5072 1.9353 -5.9830 38 1 -0.5655 0.7677 -6.9412 39 1 -2.5186 -0.7596 -6.9981 40 1 -3.4597 0.4085 -6.0399 41 1 -3.1807 2.1011 -7.8309 42 1 -2.2396 0.9325 -8.7884 43 1 -6.3484 0.8526 -11.0741 44 1 3.7482 -0.5877 3.9641 45 1 2.8239 -2.9670 3.8268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322571960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -44.761806 kcal Electronic energy + Delta-G solvation = -26227.476352 eV Core-core repulsion = 22371.378420 eV Total energy + Delta-G solvation = -3856.097932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99783 -40.71883 -39.79857 -37.74271 -37.01301 -35.32327 -34.82647 -33.27716 -30.67078 -29.42072 -28.55835 -27.79035 -26.53498 -25.34826 -23.75246 -22.35272 -22.19762 -21.14845 -20.71380 -19.05005 -18.81516 -18.61656 -18.12838 -17.48505 -16.90637 -16.67039 -16.32902 -16.27077 -15.98457 -15.56969 -15.36911 -15.23457 -14.86914 -14.76504 -14.35598 -14.11411 -14.02355 -13.81710 -13.75424 -13.65334 -13.40865 -12.81544 -12.73909 -12.71029 -12.58226 -12.45495 -12.23654 -12.07743 -11.86875 -11.76036 -11.59199 -11.32140 -10.74589 -10.66702 -10.44298 -10.42395 -10.27212 -10.00091 -9.73749 -8.27561 -6.31991 -0.29171 0.32819 0.39911 0.81400 1.22411 1.39132 1.40920 1.52599 1.84548 2.09375 2.38257 2.41063 3.07792 3.08290 3.29622 3.65744 3.82384 4.00991 4.04301 4.19627 4.28775 4.31034 4.39343 4.44009 4.49779 4.54665 4.56262 4.69718 4.75555 4.82471 4.88455 4.92799 5.01690 5.04855 5.15827 5.20131 5.22786 5.34551 5.48586 5.56922 5.66298 5.85356 6.19781 6.29043 6.64699 6.74525 6.76522 6.91873 7.32785 8.88953 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.001769 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.333964 B =15821.820988 C =16405.820472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.026 4.026 3 H 0.102 0.898 4 C 0.121 3.879 5 N -0.578 5.578 6 C 0.065 3.935 7 C 0.508 3.492 8 O -0.529 6.529 9 C 0.501 3.499 10 O -0.533 6.533 11 N -0.689 5.689 12 C 0.126 3.874 13 C -0.105 4.105 14 C -0.011 4.011 15 C -0.533 4.533 16 H 0.034 0.966 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.243 1.243 23 C 0.042 3.958 24 N -0.498 5.498 25 C 0.019 3.981 26 C -0.253 4.253 27 S 0.140 5.860 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.417 0.583 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.196 0.804 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.646 -3.702 27.612 36.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.121 0.879 4 C -0.002 4.002 5 N -0.310 5.310 6 C -0.076 4.076 7 C 0.290 3.710 8 O -0.406 6.406 9 C 0.282 3.718 10 O -0.411 6.411 11 N -0.342 5.342 12 C 0.003 3.997 13 C -0.143 4.143 14 C -0.049 4.049 15 C -0.571 4.571 16 H 0.052 0.948 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.773 3.227 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.167 1.167 23 C -0.236 4.236 24 N -0.213 5.213 25 C -0.131 4.131 26 C -0.392 4.392 27 S 0.393 5.607 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.213 0.787 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 23.225 -3.720 26.912 35.742 hybrid contribution -0.080 0.458 0.243 0.524 sum 23.144 -3.263 27.155 35.829 Atomic orbital electron populations 1.21841 0.92814 1.02806 1.01836 1.20143 0.96532 1.00135 0.88077 0.87940 1.21811 1.01789 0.95163 0.81438 1.47679 1.18378 1.37873 1.27113 1.22480 0.93591 0.89500 1.02028 1.20040 0.82737 0.83288 0.84908 1.90768 1.49991 1.34061 1.65744 1.20225 0.82089 0.84314 0.85159 1.90681 1.50326 1.30860 1.69259 1.45911 1.24758 1.37689 1.25807 1.21522 0.97251 0.96304 0.84618 1.21519 0.95109 1.00142 0.97514 1.19455 0.94849 0.96360 0.94193 1.21490 1.08500 1.18231 1.08912 0.94763 1.26032 0.95440 0.99845 0.98096 1.70072 1.21952 1.44398 1.22827 0.85658 0.78501 0.79354 0.79149 1.19186 1.21264 1.16660 1.26895 1.00275 0.96211 1.00211 1.66299 1.13847 1.38041 1.03100 1.22197 1.02681 0.90128 0.98086 1.27545 1.05355 1.03047 1.03248 1.84229 1.47089 1.11864 1.17507 0.91841 0.92268 0.92670 0.89342 0.87190 0.91909 0.88682 0.88851 0.74564 0.91041 0.90775 0.91838 0.91957 0.95703 0.95731 0.92561 0.78706 0.77772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.80 71.98 0.56 -1.86 16 2 C -0.03 -0.40 3.02 -11.54 -0.03 -0.44 16 3 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 4 C 0.12 1.73 4.90 86.38 0.42 2.16 16 5 N -0.58 -10.11 2.76 -848.38 -2.34 -12.45 16 6 C 0.07 0.97 9.54 127.77 1.22 2.18 16 7 C 0.51 11.51 6.41 87.27 0.56 12.07 16 8 O -0.53 -13.39 14.11 -3.23 -0.05 -13.43 16 9 C 0.50 12.81 7.77 87.27 0.68 13.49 16 10 O -0.53 -14.96 13.17 -3.24 -0.04 -15.00 16 11 N -0.69 -17.84 5.55 -464.40 -2.58 -20.41 16 12 C 0.13 3.66 5.67 86.38 0.49 4.15 16 13 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 14 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 15 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 16 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 17 C 0.00 0.15 5.47 84.66 0.46 0.61 16 18 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 19 Si 0.95 43.57 27.47 68.60 1.88 45.45 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 23 C 0.04 0.67 6.03 88.52 0.53 1.20 16 24 N -0.50 -8.83 10.54 -191.45 -2.02 -10.85 16 25 C 0.02 0.24 11.35 83.65 0.95 1.19 16 26 C -0.25 -2.55 11.37 66.78 0.76 -1.79 16 27 S 0.14 1.79 22.67 -56.49 -1.28 0.51 16 28 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.15 6.03 -2.38 -0.01 1.13 16 31 H 0.09 1.38 7.42 -2.39 -0.02 1.36 16 32 H 0.11 1.12 7.85 -2.39 -0.02 1.10 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.87 7.82 -2.39 -0.02 0.85 16 35 H 0.09 1.74 5.44 -2.39 -0.01 1.73 16 36 H 0.42 10.02 7.96 -92.71 -0.74 9.28 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 42 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 43 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 44 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -70.36 383.73 1.23 -69.14 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.21 Total: 16.89 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 7.13 Total: -0.74 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -6.63 Total: -102.82 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.09 Total: -28.44 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.28 Total: 0.51 kcal Total: -70.36 1.23 -69.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322571960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.374 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds