Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46824 * 2 1 4 4 C 1.52994 * 109.47292 * 119.99900 * 2 1 3 5 5 N 1.46505 * 109.47121 * 294.99831 * 4 2 1 6 6 C 1.46489 * 120.00420 * 270.00046 * 5 4 2 7 7 C 1.34782 * 119.99475 * 90.00127 * 5 4 2 8 8 O 1.21347 * 120.00443 * 356.67962 * 7 5 4 9 9 C 1.49456 * 119.99702 * 176.67595 * 7 5 4 10 10 O 1.21348 * 120.00010 * 5.91955 * 9 7 5 11 11 N 1.34775 * 119.99812 * 185.91484 * 9 7 5 12 12 C 1.46497 * 119.99783 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47074 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47240 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46945 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00166 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99716 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99850 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47014 * 59.99803 * 19 17 15 21 21 H 1.48500 * 109.47225 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47096 * 299.99946 * 19 17 15 23 23 C 1.50700 * 109.47002 * 240.00239 * 2 1 3 24 24 N 1.29026 * 124.91503 * 299.69004 * 23 2 1 25 25 C 1.31781 * 117.12682 * 180.27132 * 24 23 2 26 26 C 1.33647 * 114.49533 * 359.97438 * 25 24 23 27 27 S 1.70980 * 124.91500 * 120.00068 * 23 2 1 28 28 H 1.08997 * 109.47597 * 59.99975 * 1 2 3 29 29 H 1.09004 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47254 * 299.99810 * 1 2 3 31 31 H 1.09001 * 109.47184 * 54.99938 * 4 2 1 32 32 H 1.08998 * 109.47317 * 175.00144 * 4 2 1 33 33 H 1.08998 * 109.47265 * 95.95442 * 6 5 4 34 34 H 1.09006 * 109.47451 * 215.95535 * 6 5 4 35 35 H 1.09000 * 109.47120 * 335.95761 * 6 5 4 36 36 H 0.96999 * 120.00182 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.46843 * 299.99454 * 12 11 9 38 38 H 1.08994 * 109.47378 * 60.00072 * 12 11 9 39 39 H 1.09001 * 109.46655 * 299.99343 * 13 12 11 40 40 H 1.09002 * 109.47781 * 59.99189 * 13 12 11 41 41 H 1.09001 * 109.46869 * 299.99345 * 14 13 12 42 42 H 1.08994 * 109.47186 * 59.99861 * 14 13 12 43 43 H 0.97006 * 119.99849 * 180.02562 * 18 17 15 44 44 H 1.07996 * 122.75070 * 180.02562 * 25 24 23 45 45 H 1.08005 * 126.03128 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0355 2.4424 6 6 2.5427 1.0697 2.9751 7 6 0.4768 -0.2201 3.0499 8 8 -0.2875 -1.0340 2.5747 9 6 0.1146 0.4990 4.3090 10 8 0.8269 1.3885 4.7262 11 7 -1.0033 0.1597 4.9810 12 6 -1.3587 0.8650 6.2149 13 6 -2.6616 0.2898 6.7739 14 6 -3.0325 1.0259 8.0629 15 6 -4.3162 0.4597 8.6132 16 1 -4.8176 -0.3443 8.0951 17 6 -4.8505 0.9683 9.7780 18 7 -4.2396 1.9472 10.4091 19 14 -6.4420 0.2671 10.4597 20 1 -6.2624 -1.1784 10.7486 21 1 -6.8012 0.9807 11.7115 22 1 -7.5274 0.4412 9.4612 23 6 2.0323 -0.7104 -1.2305 24 7 1.7843 -1.9418 -1.5252 25 6 2.3075 -2.4097 -2.6406 26 6 3.0369 -1.5234 -3.3250 27 16 3.0194 -0.0033 -2.4343 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7994 1.2056 33 1 2.2365 2.0440 2.5942 34 1 2.4873 1.0714 4.0637 35 1 3.5667 0.8634 2.6637 36 1 -1.5726 -0.5515 4.6477 37 1 -0.5621 0.7383 6.9481 38 1 -1.4913 1.9256 6.0019 39 1 -3.4584 0.4161 6.0409 40 1 -2.5288 -0.7709 6.9870 41 1 -2.2356 0.8992 8.7958 42 1 -3.1653 2.0866 7.8502 43 1 -4.6153 2.3048 11.2289 44 1 2.1583 -3.4259 -2.9746 45 1 3.5478 -1.7069 -4.2588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322571961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -26.190244 kcal Electronic energy + Delta-G solvation = -26170.912587 eV Core-core repulsion = 22315.619979 eV Total energy + Delta-G solvation = -3855.292609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.99063 -40.12209 -38.69307 -36.74516 -35.62361 -34.16913 -33.29238 -31.25050 -29.95044 -27.88666 -27.40488 -26.68740 -25.88653 -24.09258 -22.74647 -21.76343 -20.79899 -19.96166 -19.37897 -18.52352 -17.70215 -17.10635 -16.56512 -16.35676 -15.92267 -15.65359 -15.20142 -15.14222 -14.75155 -14.50824 -14.45208 -14.21452 -13.78381 -13.68948 -13.32720 -13.22996 -12.88678 -12.62571 -12.29241 -11.97406 -11.95476 -11.87710 -11.80874 -11.72059 -11.36868 -11.26304 -10.89242 -10.76187 -10.62751 -10.03804 -9.90303 -9.84325 -9.65511 -9.40303 -9.28852 -9.13670 -9.07251 -8.86016 -8.37730 -6.02728 -4.05769 0.26234 0.90458 1.30486 1.42000 2.23690 2.44410 3.18395 3.32648 3.37183 3.39069 3.43715 3.72118 4.35205 4.42133 4.45014 4.52888 4.59103 4.75881 4.95075 4.99318 5.05946 5.18896 5.33203 5.39219 5.47627 5.55020 5.58695 5.68409 5.69904 5.73507 5.76725 6.05650 6.07292 6.15098 6.33150 6.53581 6.69636 6.81840 6.94882 7.30845 7.33091 7.61160 7.69963 7.72986 7.95416 8.05026 8.36765 9.00453 9.58563 11.08420 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030168 B = 0.001682 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.899488 B =16640.923498 C =17236.455266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 H 0.092 0.908 4 C 0.128 3.872 5 N -0.590 5.590 6 C 0.063 3.937 7 C 0.506 3.494 8 O -0.510 6.510 9 C 0.500 3.500 10 O -0.521 6.521 11 N -0.690 5.690 12 C 0.114 3.886 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.061 3.939 24 N -0.466 5.466 25 C 0.042 3.958 26 C -0.263 4.263 27 S 0.117 5.883 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.177 0.823 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.940 -4.167 -27.612 33.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 H 0.110 0.890 4 C 0.004 3.996 5 N -0.323 5.323 6 C -0.079 4.079 7 C 0.288 3.712 8 O -0.385 6.385 9 C 0.280 3.720 10 O -0.399 6.399 11 N -0.342 5.342 12 C -0.008 4.008 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.218 4.218 24 N -0.180 5.180 25 C -0.109 4.109 26 C -0.402 4.402 27 S 0.372 5.628 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.247 0.753 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 19.138 -3.173 -27.192 33.403 hybrid contribution -1.120 -1.495 -0.267 1.887 sum 18.018 -4.668 -27.460 33.173 Atomic orbital electron populations 1.21797 0.91556 1.03991 1.01697 1.20288 0.98326 0.98085 0.88520 0.89022 1.21575 1.00044 0.96305 0.81715 1.47673 1.19074 1.38142 1.27448 1.22467 0.92291 0.89738 1.03368 1.20344 0.82138 0.83310 0.85371 1.90783 1.48884 1.33655 1.65199 1.19995 0.82643 0.84355 0.84966 1.90660 1.49635 1.30859 1.68706 1.46096 1.23829 1.38360 1.25906 1.21839 0.98928 0.96595 0.83416 1.21931 0.93367 1.00483 1.00327 1.19027 0.96619 0.95564 0.90080 1.21167 1.07870 1.18915 1.08260 0.92620 1.25020 0.97483 0.95023 0.96875 1.69954 1.39483 1.25956 1.17884 0.86632 0.83748 0.79162 0.78301 1.20237 1.21275 1.20231 1.26996 1.00195 0.93405 1.01178 1.66229 1.22583 1.11732 1.17460 1.21875 0.96802 1.01658 0.90594 1.27108 1.09890 0.96043 1.07180 1.84099 1.47192 1.15045 1.16509 0.92981 0.90592 0.91679 0.88252 0.89896 0.92113 0.87122 0.91671 0.75317 0.91095 0.91081 0.92425 0.92442 0.96199 0.96202 0.92874 0.80642 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 7.87 37.16 0.29 -1.05 16 2 C -0.03 -0.24 3.03 -91.78 -0.28 -0.52 16 3 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 4 C 0.13 1.14 5.01 -4.04 -0.02 1.11 16 5 N -0.59 -6.00 2.76 -182.09 -0.50 -6.50 16 6 C 0.06 0.55 9.58 59.84 0.57 1.12 16 7 C 0.51 6.47 6.43 -11.58 -0.07 6.39 16 8 O -0.51 -7.30 14.03 5.50 0.08 -7.22 16 9 C 0.50 7.15 7.77 -11.58 -0.09 7.06 16 10 O -0.52 -8.11 13.15 5.50 0.07 -8.04 16 11 N -0.69 -10.05 5.55 -60.73 -0.34 -10.38 16 12 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 13 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.06 0.52 5.91 -13.46 -0.08 0.44 16 24 N -0.47 -4.55 10.53 -11.86 -0.12 -4.67 16 25 C 0.04 0.31 11.35 -19.18 -0.22 0.09 16 26 C -0.26 -1.58 11.37 29.12 0.33 -1.24 16 27 S 0.12 0.76 23.17 -107.50 -2.49 -1.73 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 30 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 31 H 0.10 1.07 7.47 -51.93 -0.39 0.68 16 32 H 0.08 0.57 7.85 -51.93 -0.41 0.17 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.11 1.18 5.37 -51.93 -0.28 0.90 16 35 H 0.06 0.39 7.83 -51.93 -0.41 -0.02 16 36 H 0.41 5.52 7.96 -40.82 -0.32 5.19 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.18 0.59 8.06 -52.48 -0.42 0.16 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -32.00 387.96 -8.74 -40.74 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.72 Total: 1.38 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.28 Total: -0.04 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.23 Total: -47.35 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.15 Total: -15.26 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.00 -8.74 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322571961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.549 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds